Prebiotic phosphate: a problem insoluble in water ? ]

It is well-known that in water phosphate readily reacts with calcium, precipitating as insoluble apatite. How phosphorus could have been available for prebiotic reactions is still an open problem. We suggest that phosphorus-containing compounds might have accumulated in a hydrophobic medium, since the absence of calcium ions would have prevented them from precipitating as apatite. Hydrophobic compounds may have been synthesized on the early Earth through the polymerization of methane or through Fischer-Tropsch-type reactions. Moreover, hydrophobic compounds would have been delivered to the early Earth by extraterrestrial infall. In previous articles (Morchio and Traverso [1999], Morchio et al. [2001]) we suggested that such hydrophobic material would have formed a hydrophobic layer on the surface of the sea, which would have provided an environment thermodynamically more suitable than water for the concentration and polymerization of organic molecules fundamental to life, particularly amino acids and (pyrimidine) bases. It may be hypothesized that elemental phosphorus or phosphorus-containing compounds (such as phosphite) deriving from volcanic eruptions would have ended up raining down into the hydrophobic layer, accumulating due to the absence of calcium ions, in an environment protected against hydrolysis. Phosphorus-containing compounds might have interacted with hydrophobic molecules in the layer giving rise to polymers. In particular, phosphite might have reacted with the hydrophobic amino acids, giving rise to phosphoamino acids, which, in turn, might have interacted with pyrimidine bases (relatively abundant in the layer) giving rise to peptides and oligonucleotide-like polymers. Indeed, it has been experimentally shown (Zhou et al. [1996]) that, in an anhydrous organic medium (pyridine), dialkilphosphite reacts with amino acids to form phosphoamino acids, which interact with pyrimidine nucleosides to give nucleotides, short oligonucleotides and phosphoryl peptides.     

Studies on the reaction of fluorescamine with primary amines

Fluorescamine is a useful reagent for the fluorometric assay of primary amines. The extent of the reaction between fluorescamine and primary amines, as well as the fluorescence intensities of the resulting fluorophors depend on pH, solvent composition and reagent concentration. Optimum values for these variables further depend on the amine under study. The influence of these parameters on the fluorogenic reaction of representative amines, and on their fluorophoric derivatives has been investigated, and the results are reported here.     

FastStor: improving the performance of a large scale hybrid storage system via caching and prefetching

Storing enormous amount of data on hybrid storage systems has become a widely accepted solution for today’s production level applications in order to trade off the performance and cost. However, how to improve the performance of large scale storage systems with hybrid components (e.g. solid state disks, hard drives and tapes) and complicated user behaviors is not fully explored. In this paper, we conduct an in-depth case study (we call it FastStor) on designing a high performance hybrid storage system to support one of the world’s largest satellite images distribution systems operated by the U.S. Geological Survey (USGS) Earth Resources Observation and Science (EROS) center. We demonstrate how to combine conventional caching policies with innovative current popularity oriented and user-specific prefetching algorithms to improve the performance of the EROS system. We evaluate the effectiveness of our proposed solution using over 5 million real world user download requests provided by EROS. Our experimental results show that using the Least Recently Used (LRU) caching policy alone, we are able to achieve an overall 64 % or 70 % hit ratio on a 100 TB or 200 TB FTP server farm composed of Solid State Disks (SSDs) respectively. The hit ratio can be further improved to 70 % (for 100 TB SSDs) and 76 % (for 200 TB SSDs) if intelligent prefetching algorithms are used together with LRU.     

Exposure of Dunnocks (Prunella modularis) to their Previous Wintering Site Modifies Autumnal Activity Pattern: Evidence for Site Recognition?

We caught dunnocks at a wintering site near Pisa/Italy prior to their departure for breeding territories and held them indoors north of this site (Andechs/Germany) on a simulated photoperiod of 52.5 °N. After birds had gone through a reproductive cycle and postnuptial moult they developed migratory restlessness in autumn. At this time one group was transferred back to the previous wintering site (Pisa) where birds were held in individual activity cages in an outdoor aviary, allowing them to perceive as much environmental information as possible. A second group was transferred to a control site near Tour du Valat/France of approximately the same latitude and climate, but different longitude and held in an identical aviary. The diurnal activity pattern changed after transfer back to the previous wintering site, but not after transfer to the control site. Specifically, the amount of morning activity was reduced while afternoon activity was increased. This effect was restricted to those individuals that had been developing nocturnal migratory restlessness the previous spring. It was absent in individuals without migratory restlessness in spring, indicating that the different patterns were not due to unspecific effects from the testing sites. These results are consistent with the hypothesis that birds were able to derive information about their locality and to recognize their previous wintering site, resulting in suppression of migratory state by experience. The results are not definitely conclusive, however, because of several difficulties in the interpretation of perch-hopping activity, which are discussed in detail.     

Effects of Ethanolic Extract of Cynara cardunculus (Artichoke) Leaves on Neuroinflammatory and Neurochemical Parameters in a Diet-Induced Mice Obesity Model

Neurochemical Research - This study aimed to evaluate the effect of Cynara cardunculus leaf ethanol extract on inflammatory and oxidative stress parameters in the hypothalamus, prefrontal cortex,...     

Proteomics evaluation of five economical commercial abundant protein depletion kits for enrichment of diseases-specific biomarkers from blood serum

Blood serum is arguably the most analyzed biofluid for disease prediction and diagnosis. Herein, we benchmarked five different serum abundant protein depletion (SAPD) kits with regard to the identification of disease-specific biomarkers in human serum using bottom-up proteomics. As expected, the IgG removal efficiency among the SAPD kits is highly variable, ranging from 70% to 93%. A pairwise comparison of database search results showed a 10%–19% variation in protein identification among the kits. Immunocapturing-based SAPD kits against IgG and albumin outperformed the others in the removal of these two abundant proteins. Conversely, non-antibody-based methods (i.e., kits using ion exchange resins) and kits leveraging a multi-antibody approach were proven to be less efficient in depleting IgG/albumin from samples but led to the highest number of identified peptides. Notably, our results indicate that different cancer biomarkers could be enriched up to 10% depending on the utilized SAPD kit compared with the undepleted sample. Additionally, functional analysis of the bottom-up proteomic results revealed that different SAPD kits enrich distinct disease- and pathway-specific protein sets. Overall, our study emphasizes that a careful selection of the appropriate commercial SAPD kit is crucial for the analysis of disease biomarkers in serum by shotgun proteomics.     

Early calcium handling imbalance in pressure overload-induced heart failure with nearly normal left ventricular ejection fraction

Heart failure with preserved ejection fraction (HFpEF) is a common clinical syndrome associated with high morbidity and mortality. Therapeutic options are limited due to a lack of knowledge of the pathology and its evolution. We investigated the cellular phenotype and Ca²⁺ handling in hearts recapitulating HFpEF criteria. HFpEF was induced in a portion of male Wistar rats four weeks after abdominal aortic banding. These animals had nearly normal ejection fraction and presented elevated blood pressure, lung congestion, concentric hypertrophy, increased LV mass, wall stiffness, impaired active relaxation and passive filling of the left ventricle, enlarged left atrium, and cardiomyocyte hypertrophy. Left ventricular cell contraction was stronger and the Ca²⁺ transient larger. Ca²⁺ cycling was modified with a RyR2 mediated Ca²⁺ leak from the sarcoplasmic reticulum and impaired Ca²⁺ extrusion through the Sodium/Calcium exchanger (NCX), which promoted an increase in diastolic Ca²⁺. The Sarcoplasmic/endoplasmic reticulum Ca²⁺ ATPase (SERCA2a) and NCX protein levels were unchanged. The phospholamban (PLN) to SERCA2a ratio was augmented in favor of an inhibitory effect on the SERCA2a activity. Conversely, PLN phosphorylation at the calmodulin-dependent kinase II (CaMKII)-specific site (PLN-Thr17), which promotes SERCA2A activity, was increased as well, suggesting an adaptive compensation of Ca²⁺ cycling. Altogether our findings show that cardiac remodeling in hearts with a HFpEF status differs from that known for heart failure with reduced ejection fraction. These data also underscore the interdependence between systolic and diastolic “adaptations” of Ca²⁺ cycling with complex compensative interactions between Ca²⁺ handling partner and regulatory proteins.