NMR-derived model of interconverting conformations of an ICAM-1 inhibitory cyclic nonapeptide.

We have produced by phage-display a disulfide-linked cyclic nonapeptide (inhibitory peptide-01, IP01), CLLRMRSIC, that binds to intracellular adhesion molecule-1 (ICAM-1) and blocks binding to its counter-structure, leukocyte functional antigen-1 (LFA-1). As a first step towards improving its pharmacologic properties, we have performed a structural and functional analysis of this peptide inhibitor to determine the features relevant to ICAM-1 binding. We report here the solution model of our initial product, IP01, as derived from two-dimensional nuclear magnetic resonance (NMR) restraints and molecular modeling. Distance and dihedral angle restraints, generated from nuclear Overhauser effect spectroscopy (NOESY) and one-dimensional-NMR experiments respectively, were used to generate an ensemble of structures using distance geometry and simulated annealing. Molecular dynamic simulations produced three interconverting conformational families consistent with the NMR-derived constraints. We describe these conformations and their mechanism of interconversion. Furthermore, we have measured the IC50 s of a series of inhibitors generated from IP01 through alanine substitution of each residue. These results show that the L2-L3-R4-M5-R6 segment is functionally active, conformationally flexible, and contains a beta-turn involving residues R4-S7, while the C1-C9-I8-S7 segment is less functionally-active but adopts a more defined solution conformation, consistent with a scaffolding function. This model will be useful for designing nonpeptide-based organic inhibitors with improved pharmacologic properties.     

Fertility table and rate of population growth of the predator Supputius cincticeps (Heteroptera: Pentatomidae) on one plant of Eucalyptus cloeziana in the field

The reproductive potential and population growth (r_m and λ) of the predator Supputius cincticeps (Heteroptera: Pentatomidae) were evaluated using a life and fertility table. S. cincticeps was reared on one plant of Eucalyptus cloeziana in the field and fed with Tenebrio molitor (Coleoptera: Tenebrionidae) pupae. Females of this predator had a net reproductive rate (R₀) of 21.02 females/female; an intrinsic rate of population increase (r_m) of 0.041 and finite rate of increase (λ) of 1.042. This resulted in population growth of S. cincticeps in the eucalyptus plant with a doubling time of 17.01 days. This natural enemy can be reared under field conditions with alternative prey for use in biological control. Such individuals of S. cinticeps will be better adapted to field conditions when they are liberated.     

流行性乙型脑炎抗原重复浸清试验初步结果

1．按照Casals氏醋酮乙醚浸渍法制乙型脑炎病毒抗原过程中,将病毒鼠脑组几重复以生理鹽水浸渍制作抗原。 2．经第2次浸出的抗原舆初次浸出者分别做補髓结合试验,结果在效价上无顯著的差刖亦无抗補體的理象的发生。 3．此种第2次漫出抗原,在抗原敏感性测定及抗原特異性的的试验,均初步证明可供宝際補體结合试验的应用。因而在不增加成本及复稚步骤条件下,可加倍抗原的产量供应。     

Competitive strategies for water availability in two Mediterranean Quercus species

Competition for water availability was studied in a mixed natural stand of Quercus suber L. and Quercus cerris L. growing in Sicily by measuring diurnal changes of leaf conductance to water vapour ( g _L), water potential ( Ψ _L) and relative water content ( RWC ) in April, July and October 1997 as well as the seasonal changes in root hydraulic conductance per unit leaf surface area ( K _RL). Quercus cerris behaved as a drought-tolerant species, with strong reductions of K _RL, Ψ _L, and RWC in the summer. By contrast, Q. suber appeared to withstand summer drought by an avoidance strategy based on reducing g _L, maintaining Ψ _L and RWC high and K _RL at the same level as that measured in the spring. A 'conductance ratio' ( CR ) was calculated in terms of the ratio of g _L to K _RL. Seasonal changes of this ratio contrasted in the two species, thus suggesting that Q. suber and Q. cerris did not really compete for available water. In the summer, when Q. suber was extracting water from the soil to maintain high leaf hydration, Q. cerris had restricted water absorption, thus suffering drought but tolerating its effects. The possibility that cohabitation of drought-tolerant with drought-avoiding species can be generalized is also discussed.     

Leaf internal diffusion conductance limits photosynthesis more strongly in older leaves of Mediterranean evergreen broad-leaved species

Leaf age-dependent changes in structure, nitrogen content, internal mesophyll diffusion conductance (g_m), the capacity for photosynthetic electron transport (J_max) and the maximum carboxylase activity of Rubisco (V_cmax) were investigated in mature non-senescent leaves of Laurus nobilis L., Olea europea L. and Quercus ilex L. to test the hypothesis that the relative significance of biochemical and diffusion limitations of photosynthesis changes with leaf age. The leaf life-span was up to 3 years in L. nobilis and O. europea and 6 years in Q. ilex. Increases in leaf age resulted in enhanced leaf dry mass per unit area (M_A), larger leaf dry to fresh mass ratio, and lower nitrogen contents per dry mass (N_M) in all species, and lower nitrogen contents per area (N_A) in L. nobilis and Q. ilex. Older leaves had lower g_m, J_max and V_cmax. Due to the age-dependent increase in M_A, mass-based g_m, J_max and V_cmax declined more strongly (7- to 10-fold) with age than area-based (5- to 7-fold) characteristics. Diffusion conductance was positively associated with foliage photosynthetic potentials. However, this correlation was curvilinear, leading to lower ratio of chloroplastic to internal CO₂ concentration (C_c/C_i) and larger drawdown of CO₂ from leaf internal air space to chloroplasts (Δ_C) in older leaves with lower g_m. Overall the age-dependent decreases in photosynthetic potentials were associated with decreases in N_M and in the fraction of N in photosynthetic proteins, whereas decreases in g_m were associated with increases in M_A and the fraction of cell walls. These age-dependent modifications altered the functional scaling of foliage photosynthetic potentials with M_A, N_M, and N_A. The species primarily differed in the rate of age-dependent modifications in foliage structural and functional characteristics, but also in the degree of age-dependent changes in various variables. Stomatal openness was weakly associated with leaf age, but due to species differences in stomatal openness, the distribution of total diffusion limitation between stomata and mesophyll varied among species. These data collectively demonstrate that in Mediterranean evergreens, structural limitations of photosynthesis strongly interact with biochemical limitations. Age-dependent changes in g_m and photosynthetic capacities do not occur in a co-ordinated manner in these species such that mesophyll diffusion constraints curb photosynthesis more in older than in younger leaves.     

Relax and refill: xylem rehydration prior to hydraulic measurements favours embolism repair in stems and generates artificially low PLC values

Diurnal changes in percentage loss of hydraulic conductivity (PLC), with recorded values being higher at midday than on the following morning, have been interpreted as evidence for the occurrence of cycles of xylem conduits' embolism and repair. Recent reports have suggested that diurnal PLC changes might arise as a consequence of an experimental artefact, that is, air entry into xylem conduits upon cutting stems, even if under water, while under substantial tension generated by transpiration. Rehydration procedures prior to hydraulic measurements have been recommended to avoid this artefact. In the present study, we show that xylem rehydration prior to hydraulic measurements might favour xylem refilling and embolism repair, thus leading to PLC values erroneously lower than those actually experienced by transpiring plants. When xylem tension relaxation procedures were performed on stems where refilling mechanisms had been previously inhibited by mechanical (girdling) or chemical (orthovanadate) treatment, PLC values measured in stems cut under native tension were the same as those measured after sample rehydration/relaxation. Our data call for renewed attention to the procedures of sample collection in the field and transport to the laboratory, and suggest that girdling might be a recommendable treatment prior to sample collection for PLC measurements.     

Multiplex genotyping of novel tetranucleotide microsatellites from a marine foodfish species crimson red snapper (Lutjanus erythropterus)

Crimson red snapper (Lutjanus erythropterus) is an important marine foodfish species in Asia with great potentials for aquaculture. We isolated nine polymorphic microsatellites, among which eight were tetranucleotide repeats, and one was CA‐microsatellite. The average allele number present in 48 individuals was 11.1/locus, ranging from three to 33. The expected heterozygosity ranged from 0.49 to 0.97 with an average of 0.74. Six of the nine markers conformed to the Hardy–Weinberg expectations. No pairwise markers showed the possibility of linkage. Protocols for two multiplex polymerase chain reactions (PCRs), each amplifying two and seven markers, respectively, were presented. The developed microsatellites and optimized multiplex PCRs will be useful for studying population structure of wild stocks and parentage assignment for cultured populations.     

Multiple refugia and barriers explain the phylogeography of the Valais shrew,Sorex antinorii (Mammalia: Soricomorpha)

The aim of the present study was to investigate the genetic structure of the Valais shrew (Sorex antinorii) by a combined phylogeographical and landscape genetic approach, and thereby to infer the locations of glacial refugia and establish the influence of geographical barriers. We sequenced part of the mitochondrial cytochrome b (cyt b) gene of 179 individuals of S. antinorii sampled across the entire species' range. Six specimens attributed to S. arunchi were included in the analysis. The phylogeographical pattern was assessed by Bayesian molecular phylogenetic reconstruction, population genetic analyses, and a species distribution modelling (SDM)‐based hindcasting approach. We also used landscape genetics (including isolation‐by‐resistance) to infer the determinants of current intra‐specific genetic structure. The phylogeographical analysis revealed shallow divergence among haplotypes and no clear substructure within S. antinorii. The starlike structure of the median‐joining network is consistent with population expansion from a single refugium, probably located in the Apennines. Long branches observed on the same network also suggest that another refugium may have existed in the north‐eastern part of Italy. This result is consistent with SDM, which also suggests several habitable areas for S. antinorii in the Italian peninsula during the LGM. Therefore S. antinorii appears to have occupied disconnected glacial refugia in the Italian peninsula, supporting previous data for other species showing multiple refugia within southern refugial areas. By coupling genetic analyses and SDM, we were able to infer how past climatic suitability contributed to genetic divergence of populations. The genetic differentiation shown in the present study does not support the specific status of S. arunchi. © 2012 The Linnean Society of London, Biological Journal of the Linnean Society, 2012, 105 , 864–880.     

Distribution of Vessel Ends in Stems of some Diffuse- and Ring-porous Trees: The Nodal Regions as 'Safety Zones' of the Water Conducting System

We report measurements of the number of vessels ending withinthe nodes in comparison with that in the internodes Such measurementshave been carried out during autumn 1982 and 1983 in 1-year-oldtwigs of three species with diffuse-porous wood (Vitis vintferaL. Populus deitoides Bartr and Olea europaea L) and three ring-poroustrees (Juglans nigra L, Castanea sativa Mill, Sophora JaponicaL) In all three species with diffuse-porous wood, a significantlyhigher percentage of vessels ending in the nodes (at the leafgap) was recorded when compared with that in the internodesNo significant differences were found between nodes and internodesin this respect in ring-porous trees. Since vessel ends arecapable of screening out gaseous emboli and/or particles biggerthan 1 µm in diameter, we interpret the nodes of diffuse-poroustrees as stem zones providing safety for the water conductingsystem .The reason why ring-porous trees are likely not to needsuch ‘safety zones’ is also discussed Vitis vinifera L, grapevine, Populus deltoides Bartr, poplar, Olea europaea L, olive, Juglans nigra L, Eastern black walnut, Castanea sativa Mill, European chestnut, Sophora japonica L, Japanese pagoda tree, vessel ends, nodes, internodes     

The Bonobo–Dialium Positive Interactions: Seed Dispersal Mutualism

A positive interaction is any interaction between individuals of the same or different species (mutualism) that provides a benefit to both partners such as increased fitness. Here we focus on seed dispersal mutualism between an animal (bonobo, Pan paniscus) and a plant (velvet tamarind trees, Dialium spp.). In the LuiKotale rainforest southwest of Salonga National Park, Democratic Republic of Congo, seven species of the genus Dialium account for 29.3% of all trees. Dialium is thus the dominant genus in this forest. Dialium fruits make up a large proportion of the diet of a habituated bonobo community in this forest. During the 6 months of the fruiting season, more than half of the bonobos’ feeding time is devoted to Dialium fruits. Furthermore, Dialium fruits contribute a considerable proportion of sugar and protein to bonobos’ dietary intake, being among the richest fruits for these nutrients. Bonobos in turn ingest fruits with seeds that are disseminated in their feces (endozoochory) at considerable distances (average: 1.25 km after 24 hr of average transit time). Endozoochory through the gut causes loss of the cuticle protection and tegumentary dormancy, as well as an increase in size by water uptake. Thus, after gut passage, seeds are better able to germinate. We consider other primate species as a potential seed disperser and conclude that Dialium germination is dependent on passage through bonobo guts. This plant–animal interaction highlights positive effects between two major organisms of the Congo basin rainforest, and establishes the role of the bonobo as an efficient disperser of Dialium seeds. Am. J. Primatol. 75:394‐403, 2013. © 2013 Wiley Periodicals, Inc.