Process of reductive evolution during 10 years in plasmids of a non-insect-transmissible phytoplasma

A non-insect-transmissible phytoplasma strain (OY-NIM) was obtained from insect-transmissible strain OY-M by plant grafting using no insect vectors. In this study, we analyzed for the gene structure of plasmids during its maintenance in plant tissue culture for 10 years. OY-M strain has one plasmid encoding orf3 gene which is thought to be involved in insect transmissibility. The gradual loss of OY-NIM plasmid sequence was observed in subsequent steps: first, the promoter region of orf3 was lost, followed by the loss of then a large region including orf3, and finally the entire plasmid was disappeared. In contrast, no mutation was found in a pseudogene on OY-NIM chromosome in the same period, indicating that OY-NIM plasmid evolved more rapidly than the chromosome-encoded gene tested. Results revealed an actual evolutionary process of OY plasmid, and provide a model for the stepwise process in reductive evolution of plasmids by environmental adaptation. Furthermore, this study indicates the great plasticity of plasmids throughout the evolution of phytoplasma.     

Steroidal regulation of Ihh and Gli1 expression in the rat uterus

Ovarian steroid hormones, progesterone (P4), and estradiol (E2) strictly regulate the endometrial tissue remodeling required for successful embryo implantation. Indian hedgehog (Ihh) is up-regulated by P4 and critically mediates uterine receptivity in the mouse. However, the regulation of Ihh expression during the implantation period still remains unclear. The present study was conducted to elucidate the mechanism of the steroidal regulation in the expression of Ihh and Gli1, the mediator of the Ihh pathway. Ihh mRNA was expressed in the rat uterus on 3.5–5.5 days post-coitus (dpc), while Gli1 expression transiently increased at 3.5 dpc but decreased significantly on 5.5 dpc (P < 0.001). In delayed implantation, the expression of Ihh was induced by the implantation-induced E2 treatment in the primed rat uterus. In contrast, expression of Gli1 was significantly decreased by E2 treatment (P = 0.016). In the case of ICI182.780 (ICI) treatment, Ihh expression was eliminated by ICI, whilst Gli1 expression increased. These results suggest that Ihh expression is maintained at a high level until the initiation of implantation, while the expression of Gli1 is decreased just prior to the initiation of implantation depending on the E2 action. This observation aids in the understanding of the Ihh signaling pathway mediating uterine remodeling for implantation.     

Role for Tyrosine Phosphorylation of A-kinase Anchoring Protein 8 (AKAP8) in Its Dissociation from Chromatin and the Nuclear Matrix

Protein-tyrosine phosphorylation regulates a wide variety of cellular processes at the plasma membrane. Recently, we showed that nuclear tyrosine kinases induce global nuclear structure changes, which we called chromatin structural changes. However, the mechanisms are not fully understood. In this study we identify protein kinase A anchoring protein 8 (AKAP8/AKAP95), which associates with chromatin and the nuclear matrix, as a nuclear tyrosine-phosphorylated protein. Tyrosine phosphorylation of AKAP8 is induced by several tyrosine kinases, such as Src, Fyn, and c-Abl but not Syk. Nucleus-targeted Lyn and c-Src strongly dissociate AKAP8 from chromatin and the nuclear matrix in a kinase activity-dependent manner. The levels of tyrosine phosphorylation of AKAP8 are decreased by substitution of multiple tyrosine residues on AKAP8 into phenylalanine. Importantly, the phenylalanine mutations of AKAP8 inhibit its dissociation from nuclear structures, suggesting that the association/dissociation of AKAP8 with/from nuclear structures is regulated by its tyrosine phosphorylation. Furthermore, the phenylalanine mutations of AKAP8 suppress the levels of nuclear tyrosine kinase-induced chromatin structural changes. In contrast, AKAP8 knockdown increases the levels of chromatin structural changes. Intriguingly, stimulation with hydrogen peroxide induces chromatin structural changes accompanied by the dissociation of AKAP8 from nuclear structures. These results suggest that AKAP8 is involved in the regulation of chromatin structural changes through nuclear tyrosine phosphorylation.     

Increased Cuticle Permeability Caused by a New Allele of ACETYL-COA CARBOXYLASE1 Enhances CO2 Uptake

Carbon dioxide (CO₂) is an essential substrate for photosynthesis in plants. CO₂ is absorbed mainly through the stomata in land plants because all other aerial surfaces are covered by a waxy layer called the cuticle. The cuticle is an important barrier that protects against extreme water loss; however, this anaerobic layer limits CO₂ uptake. Simply, in the process of adapting to a terrestrial environment, plants have acquired drought tolerance in exchange for reduced CO₂ uptake efficiency. To evaluate the extent to which increased cuticle permeability enhances CO₂ uptake efficiency, we investigated the CO₂ assimilation rate, carbon content, and dry weight of the Arabidopsis (Arabidopsis thaliana) mutant excessive transpiration1 (extra1), whose cuticle is remarkably permeable to water vapor. We isolated the mutant as a new allele of ACETYL-COA CARBOXYLASE1, encoding a critical enzyme for fatty acid synthesis, thereby affecting cuticle wax synthesis. Under saturated water vapor conditions, the extra1 mutant demonstrated a higher CO₂ assimilation rate, carbon content, and greater dry weight than did the wild-type plant. On the other hand, the stomatal mutant slow-type anion channel-associated1, whose stomata are continuously open, also exhibited a higher CO₂ assimilation rate than the wild-type plant; however, the increase was only half of the amount exhibited by extra1. These results indicate that the efficiency of CO₂ uptake via a permeable cuticle is greater than the efficiency via stomata and confirm that land plants suffer a greater loss of CO₂ uptake efficiency by developing a cuticle barrier.

To absorb carbon dioxide (CO₂) for photosynthesis, land plants expose their wet surfaces to a dry atmosphere and suffer evaporative water loss as a consequence (Hall et al., 1993). As too much water loss would result in dehydration, plants cover most of their aerial surfaces with a relatively impermeable layer, called the cuticle, and take in CO₂ mainly through stomatal pores, which make up only about 2% per a leaf area (Willmer and Fricker, 1996). In other words, the cuticle provides drought tolerance to plants in exchange for reduced efficiency in CO₂ uptake.The cuticle is a continuous membrane consisting of a polymer matrix (cutin), polysaccharides, and organic solvent‐soluble lipids (cuticular waxes; Holloway, 1982; Jeffree, 1996; Riederer and Schreiber, 2001). The cuticle is an important structure to protect plants against excess drought, high temperature, strong UV radiation, pathogens, and harmful insects (Kerstiens, 1996a, 1996b; Burghardt and Riederer, 2006; Riederer and Müller, 2006; Domínguez et al., 2011; Yeats and Rose, 2013). The cuticle limits the transpiration through plant surfaces other than through the stomatal pores to <10% of the total (Mohr and Schopfer, 1995). On the other hand, this impermeable layer also strongly restricts CO₂ influx. Boyer et al. (1997) and Boyer (2015a, 2015b) reported a lower conductance for CO₂ than for water vapor in cuticles of intact leaves of grape (Vitis vinifera) and sunflower (Helianthus annuus) due to the differences in molecular size and diffusion paths between the two gases. However, although many studies have explored the water permeability of cuticles in various conditions and species (Kerstiens, 1996a; Riederer and Müller, 2006; Kosma et al., 2009; Schreiber and Schönherr, 2009), much less attention has been directed to CO₂, despite its substantial role in photosynthesis.In this study, we verified the hypothesis that plants could absorb CO₂ more efficiently under non-drought stress conditions if their cuticles are more permeable. In addition, we also investigated the extent to which a permeable cuticle can enhance CO₂ uptake efficiency. To verify the hypothesis, we investigated whether the CO₂ uptake efficiency is increased in a mutant with a high cuticle permeability. For this research, we isolated an Arabidopsis (Arabidopsis thaliana) mutant named excessive transpiration1 (extra1), which exhibited marked evaporative water loss due to an increased cuticle permeability caused by a new allele of ACETYL-COA CARBOXYLASE1 (ACC1). ACC1 encodes a critical enzyme for the synthesis of malonyl-CoA, an essential substrate for fatty acid synthesis (Baud et al., 2003). To evaluate CO₂ uptake efficiency, we investigated CO₂ assimilation rate, carbon content, and dry weight of the extra1 mutant and compared them to that of wild-type plants as well as that of another mutant, slow-type anion channel-associated1 (slac1) with continuously open stomata (Negi et al., 2008; Vahisalu et al., 2008). Our results reveal that the increased cuticle permeability strongly and constantly enhances CO₂ uptake efficiency under non-drought stress conditions.     

Major complement inhibiting factors from the venom of the Central Asian cobra Naja naja oxiana

The properties of two anticomplementic factors isolated by CM-Sepharose chromatography from the basic non-adsorbed on DEAE-Sepharose fraction of the Central Asian cobra Naja naja oxiana venom, were studied. Of these three factors (CFB-I, CFB-II and CFB-III) the latter had been characterized earlier. CFB-I was shown to be a protein with an N-terminal Asp and a molecular mass of about 39 kDa (data from gel chromatography); its content in the venom is 3.6 mg/g of dry venom. The protein inhibits mainly the classical pathway of the complement activation, being bound to component C4 (Ki = 9 nM). CFB-I seems to be analogous to the CI inhibitor from the venom of the Naja haje cobra. An analysis of the N-terminal sequence of CFB-II showed it to be identical to the earlier characterized cytotoxin I. CFB-I inhibits the formation of C3 convertase with Ki = 2.2-2.8 microM by way of binding to C4b and thus interfering with the component C2 sorption.     

Stepwise dissociation of subcomponents of C1, the first component of human complement, upon activation on an affinity sorbent

An affinity sorbent comprising macroporous glass coated with the polymer with the polymer with immobilized immunoglobulin IgG was used for the isolation from human serum of the first component of the complement and for its separation into subcomponents C1r, C1s and C1q by the one-step procedure. Serum C1 was quantitatively bound to the sorbent at 0 degrees C. The unbound part of the serum can be used as a R1 reagent for determining the hemolytic activity of C1. After activation of bound C1 by heating (30 degrees C, 40 min) the activated subcomponent C1r is eluted from the sorbent. Stepwise elution with EDTA at pH 7.4 or with EDTA + 1 M NaCl at pH 8.5 results in a selective and quantitative elution of the activated subcomponent C1s and subcomponent C1q. Stepwise elution of C1 subcomponents from the affinity sorbent after activation reflects the process of C1 breakdown following its activation on immune complexes.     

Influence of chronic inflammation on the malignant phenotypes and the plasticity of colorectal cancer cells

Sporadic adenoma or adenocarcinoma is often detected during endoscopic surveillance of patients with ulcerative colitis (UC). However, it is occasionally difficult to distinguish these neoplasms from dysplasia or colitis-associated cancers because of the influence of inflammation. However, the influence of inflammation on sporadic neoplasms is not well characterised. To assess this influence, we established a long-term inflammation model of colon cancer cells by inflammatory stimulation with tumour necrosis factor-α, flagellin and interleukin-1β for 60 weeks. Then, the malignant phenotypes were evaluated using the MTS assay, Annexin V fluorescence assay, cell migration assay and sphere formation assay. The influence of P53 function on these phenotypes was assessed with a TP53 mutation model using the CRISPR/Cas9 system. A long-term inflammation model of LS174T cells was established for the first time with continuous inflammatory signalling. Chronic inflammation induced apoptosis and suppressed the proliferation and stemness of these cancer cells via the action of P53. It also enhanced the invasiveness of LS174T cells. Moreover, these phenotypic changes and changes in inflammatory signalling were recoverable after the removal of inflammatory stimuli, suggesting that colon cancer cells have higher plasticity than normal intestinal epithelial cells. In conclusion, our results suggest that sporadic neoplasms in patients with UC are affected by chronic inflammation but are not essentially altered.     

Effects of salts on the nonequivalent stability of the α-helices of isomeric block copolypeptides

The stability of the α-helices of isomeric block copolypeptides is nonequivalent, as reported previously. In order to explore the origin of the nonequivalence, the stability of α-helix of two block copolypeptides, (L -Ala)₂₀-(L -Glu)₂₀-(L -Phe) (designated as AEF) and (L -Glu)₂₀-(L -Ala)₂₀-(L -Phe) (EAF), in aqueous solution was investigated as a function of pH, temperature, and salt concentration by the measurement of the α-helical content using CD at 223 nm. The transition temperature, T_m, as a measure of the stability of the α-helix, decreased with increasing the salt concentration for EAF, while T_m increased for AEF. The results indicate that electrostatic interactions affect the nonequivalence of such helical stability. Thermodynamic quantities, ΔG, ΔH, and ΔS, of the thermal transition from random coil to α-helix were obtained by applying the curve-fitting method to the data. The major contribution to the effects of salts seems to be the entropic term, not the enthalpy term. This is unexpected, since the salt ions would weaken electrostatic interactions between ionized groups and the dipole along the helical axis, which affect the enthalpy term. In addition, the dependence of the electrostatic effect on the salt concentration is different for EAF and AEF. There fore, the nonequivalence cannot be accounted for by only the electrostatic effect, suggesting that it originates from some intrinsic property of the α-helix.     

Studies on co-operative properties of tropomyosin-actin and tropomyosin-troponin-actin complexes by the use of N-ethylmaleimide-treated and untreated species of myosin subfragment 1

When subfragment-1 of rabbit skeletal myosin was extensively modified with N-ethylmaleimide, the protein became strongly associable to actin in the presence of MgATP at low ionic strength, while the ATPase ceased to be activated by actin. Various concentrations of the modified protein were mixed with 10 μmol of pure actin or actin complexed with tropomyosin, and the fraction β of actin saturated with the modified protein in each mixture was determined by an ultracentrifugal method. We then added 0.3 μmol of unmodified subfragment-1 to the same sets of mixtures as used in the above experiments and determined the rate of ATP hydrolysis V by unmodified subfragment-1 as a function of β. A biphasic V-β relation was obtained for the tropomyosin-actin complex: when β was increased continuously from zero, the rate first increased substantially, had a maximum value more than tenfold larger than the initial at β ～- 0.3, and finally decreased to zero. In contrast, the V-β profile for pure actin deviated downwards from a linear relation, showing that there was a weak repulsive interaction between the modified and unmodified subfragment-1 species bound to the actin filament. The occurrence of such a repulsion was interpreted in terms of a steric hinderance model. Assuming that the same kind of repulsion underlay the biphasic V-β relation for the tropomyosin-actin complex, we calculated the relation of V′-β in an ideal case where it was absent. The result was also biphasic. We studied regulated actin in the presence and absence of Ca²⁺ by the same method and obtained biphasic V′-β relations in both cases.The experimental results were analyzed by a two-state model based on the proposal of Bremel & Weber (1972) that, within tropomyosin-actin or the regulated actin complex, n actin monomers undergo “off”/“on” transitions as a unit. Interactions between units were ignored in order to estimate the apparent size n, as well as the equilibrium constant L for the transition in the absence of myosin heads. Within the framework of allosteric theory (Monod et al., 1965), we derived formulae fit for data analysis, found a satisfactory agreement of the experimental and theoretical results, and obtained values of n = 11, and L = 37 for the tropomyosin-actin complex, and n = 16, L = 9 for regulated actin in the presence of Ca²⁺. The parameters in its absence could not be determined separately from the V?β relation which, however, was well-approximated with a combination of n = 16 and L = 10,000. It was also shown that tropomyosin-actin complex in the “on” state activated subfragment-1 ATPase eightfold more strongly than pure actin, and 2.2 to 2.6-fold more strongly than regulated actin in the “on” state. The results are compared with those provided by Greene & Eisenberg (1980), Hill et al. (1980) and Trybus & Taylor (1980) and discussed in conjunction with the double helical structure of tropomyosin-actin and regulated actin filaments.A simple allosteric calculation is presented in the Appendix to explain the well-known biphasic dependence on substrate concentration of the rate of regulated actin-subfragment-1 MgATPase (Bremel et al., 1972; Weber & Murray, 1973), with a reference to Deshcherevsky (1977).     

Inflammation-driven senescence-associated secretory phenotype in cancer-associated fibroblasts enhances peritoneal dissemination

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