Choline chloride effect on chloroplast ultrastructure and cell growth in Chlamydomonas reinhardtii

The influence of growth retardant choline chloride (0.02, 0.2 and 2 g/l) on cell size and division as well as chlorophyll accumulation and chloroplast ultrastructure of unicellular green algae Chlamydomonas was studied. It was shown that at any concentration used (0.02, 0.2, and 2 g/l) choline chloride decreased the rate of cell division. The content of chlorophyll and carotenoid per cell decreased and the sizes of cells increased at all concentrations of choline chloride. On the basis of electron microscopy data, the conclusion was made that an increase in the concentration of choline chloride intensified destruction processes in membranes of chloroplasts and other cell organelles.     

Comparative genomics of 274 Vibrio cholerae genomes reveals mobile functions structuring three niche dimensions

Background

Vibrio cholerae is a globally dispersed pathogen that has evolved with humans for centuries, but also includes non-pathogenic environmental strains. Here, we identify the genomic variability underlying this remarkable persistence across the three major niche dimensions space, time, and habitat.

Results

Taking an innovative approach of genome-wide association applicable to microbial genomes (GWAS-M), we classify 274 complete V. cholerae genomes by niche, including 39 newly sequenced for this study with the Ion Torrent DNA-sequencing platform. Niche metadata were collected for each strain and analyzed together with comprehensive annotations of genetic and genomic attributes, including point mutations (single-nucleotide polymorphisms, SNPs), protein families, functions and prophages.

Conclusions

Our analysis revealed that genomic variations, in particular mobile functions including phages, prophages, transposable elements, and plasmids underlie the metadata structuring in each of the three niche dimensions. This underscores the role of phages and mobile elements as the most rapidly evolving elements in bacterial genomes, creating local endemicity (space), leading to temporal divergence (time), and allowing the invasion of new habitats. Together, we take a data-driven approach for comparative functional genomics that exploits high-volume genome sequencing and annotation, in conjunction with novel statistical and machine learning analyses to identify connections between genotype and phenotype on a genome-wide scale.

Electronic supplementary material

The online version of this article (doi:10.1186/1471-2164-15-654) contains supplementary material, which is available to authorized users.     

Response of photosynthetic apparatus in Arabidopsis thaliana L. mutant deficient in phytochrome A and B to UV-B

Photosynthetica - The effects of UV-B radiation (1 W m–2, 1 and 2 h) on PSII activity, chloroplast structure, and H2O2 contents in leaves of 26-d-old Arabidopsis thaliana phyA phyB double...