TPS1 terminator increases mRNA and protein yield in a Saccharomyces cerevisiae expression system

Both terminators and promoters regulate gene expression. In Saccharomyces cerevisiae, the TPS1 terminator (TPS1t), coupled to a gene encoding a fluorescent protein, produced more transgenic mRNA and protein than did similar constructs containing other terminators, such as CYC1t, TDH3t, and PGK1t. This suggests that TPS1t can be used as a general terminator in the development of metabolically engineered yeast in high-yield systems.     

Mannich reaction derivatives of novobiocin with modulated physiochemical properties and their antibacterial activities

Synthetic derivatives of the natural product antibiotic novobiocin were synthesized in order to improve their physiochemical properties. A Mannich reaction was used to introduce new side chains at a solvent-exposed position of the molecule, and a diverse panel of functional groups was evaluated at this position. Novobiocin and the new derivatives were tested for their binding to gyrase B and their antibacterial activities against Staphylococcus aureus, Mycobacterium tuberculosis, Francisella tularensis and Escherichia coli. While the new derivatives still bound the gyrase B protein potently (0.07-1.8 μM, IC(50)), they had significantly less antibacterial activity. Two compounds were identified with increased antibacterial activity against M. tuberculosis, with a minimum inhibitory concentration of 2.5 μg/ml.     

Middle East Respiratory Syndrome Coronavirus Infection Mediated by the Transmembrane Serine Protease TMPRSS2

The Middle East respiratory syndrome coronavirus (MERS-CoV) utilizes host proteases for virus entry into lung cells. In the current study, Vero cells constitutively expressing type II transmembrane serine protease (Vero-TMPRSS2 cells) showed larger syncytia at 18 h after infection with MERS-CoV than after infection with other coronaviruses. Furthermore, the susceptibility of Vero-TMPRSS2 cells to MERS-CoV was 100-fold higher than that of non-TMPRSS2-expressing parental Vero cells. The serine protease inhibitor camostat, which inhibits TMPRSS2 activity, completely blocked syncytium formation but only partially blocked virus entry into Vero-TMPRSS2 cells. Importantly, the coronavirus is thought to enter cells via two distinct pathways, one mediated by TMPRSS2 at the cell surface and the other mediated by cathepsin L in the endosome. Simultaneous treatment with inhibitors of cathepsin L and TMPRSS2 completely blocked virus entry into Vero-TMPRSS2 cells, indicating that MERS-CoV employs both the cell surface and the endosomal pathway to infect Vero-TMPRSS2 cells. In contrast, a single camostat treatment suppressed MERS-CoV entry into human bronchial submucosal gland-derived Calu-3 cells by 10-fold and virus growth by 270-fold, although treatment with both camostat and (23,25)-trans-epoxysuccinyl-l-leucylamindo-3-methylbutane ethyl ester, a cathepsin inhibitor, or treatment with leupeptin, an inhibitor of cysteine, serine, and threonine peptidases, was no more efficacious than treatment with camostat alone. Further, these inhibitors were not efficacious against MERS-CoV infection of MRC-5 and WI-38 cells, which were derived from lung, but these characters differed from those of mature pneumocytes. These results suggest that a single treatment with camostat is sufficient to block MERS-CoV entry into a well-differentiated lung-derived cell line.     

Simulation Performance of a Non-Equilibrium Molecular Dynamics Method Using Density Difference as Driving Force

Abstract

The simulation performance of two NEMD algorithms, the constant density difference (DD) and the constant chemical potential difference (CPD) methods, has been compared in fluctuations of molar flux for He and CH₄ permeation across the ZSM-5 membrane. The CPD method and the DD method are found to give almost the same performance; however, the former seems slightly superior to the latter in terms of low fluctuations of molar flux though the former needs more CPU time than the latter. An advantage of the DD method is that it can simulate the mixed-gas permeation through a membrane under the specification of high and low pressures and the composition of feed gas. It is shown that the density profile of permeating gas could provide important information about the relative resistance at the entrance, inside, and exit regions for permeation.     

Combined Effects of Radiation and Inorganic Reagents during Irradiation on Radiosensitivity of Bacterial Cells

The combined effects of inorganic reagents and radiation on the inactivation of E. coli in the resting state were studied. Among these reagents halides such as NaCI, KCI, KBr and KI were found to have a considerable synergistic action to radiation. Temperature effect on the halide action during irradiation was not observed, but removal of oxygen from halide solutions increased the radiosensitivity of cells. Combined effects of radiation and some other inorganic reagents were also investigated. Heavy metal salts and hydrogen peroxide were synergistic, nitrates and sulfates having no influence or a slightly protective action. Barium chloride and calcium chloride were protective in lower concentrations and synergistic in higher concentrations. These synergistic actions of inorganic reagents except ferric salts were observed during irradiation, but not after the irradiation.     

Double-strand Scissions in DNA of Gamma-irradiated Micrococcus radiodurans and their Repair during Postirradiation Incubation

Strand scissions in DNA of M, radiodurans after in vivo irradiation with ⁶⁰Co gamma rays were investigated by the sedimentation analysis using neutral sucrose gradients. Double-strand scission in DNA was estimated to occur at the rate of one double cut per 800 eV. This rate is in a good agreement of the value reported for mammalian cells. The rejoining of these double-strand scissions was observed during the repair process of the post-irradiation incubation and the mean rejoining time, i.e., the time reducing the remaining fraction of the double-strand scission to 0.37, was found to be 52 min. This rejoining repair was inhibited by adding chloramphenicol, tetracycline or actinomycin D to the postirradiation incubation medium. It is suggested that the high resistance character of M. radiodurans to gamma rays may be due to the efficient capacity of this rejoining repair.     

Production of S-Methyl Thioacetate from Methyl Mercaptan by Saccharomyces cerevisiae

Physicochemical properties of human к-casein were studied by ultracentrifugal analysis and circular dichroism (CD) measurement. The result of sedimentation velocity analysis in 50mm imidazole-HCl buffer at pH 7.0 showed that human к-casein was present in a monomerie form with S^°_20.w of 2.7S. The molecular weight of this protein was estimated to be 38,000 by a short column method. The molecular shape was considered to be a flat ellipsoid with the shape factor of 16.74 and with the frictional coefficient of 2.17. From the result of CD measurement, human к-casein was computed to have 2% α-helix, 43% α-sheet and 26% α-turn structures. Interaction of human к-casein with human к-casein was observed by sedimentation velocity analysis and discpolyacrylamide gel electrophoresis, but no association occurred between human к-casein and human lactoferrin under the conditions we studied.     

Tissue Distribution of ERp61 and Association of Its Increased Expression with IgG Production in Hybridoma Cells

A protein of molecular weight 60 kDa was purified from the culture medium of a murine colon carcinoma cell line, colon26, and its partial amino-acid sequence determined. Extremely high homology was found with the deduced sequence from cDNA of rat ERp61, earlier found to be an endoplasmic reticulum (ER)-resident protein with redox activity and a similar structure to protein disulfide isomerase (PDI). Western blotting analysis showed that colon26 cells secrete a significant amount of ERp61 into culture medium, although most remains intracellular. The thiol:protein disulfide oxidoreductase activity of the purified mouse ERp61 was demonstrated by insulin-reduction assay. The ER location of the protein in fibroblasts was immunocytochemically confirmed by double staining for ERp61 and another ER-resident protein, PDI or Hsp47. Immunohistochemical studies of murine tissues showed a ubiquitous distribution of ERp61 in a wide variety of cell types. However, it was particularly abundant in plasma cells, mucus-secreting cells in various tissues, neuroendocrine cells including neurons, and follicular epithelia of thyroid gland that actively synthesize and secrete proteins containing cysteine residues. Furthermore, a high correlation was observed between intracellular amounts of ERp61 and immunoglobulin production by hybridoma cells. These results indicate that ERp61 may be involved in disulfide bond formation for such proteins.     

SecF stabilizes SecD and SecY, components of the protein translocation machinery of the Escherichia coli cytoplasmic membrane.

The effect of the overproduction of SecF encoded by the tac-secF gene on a plasmid on the synthesis of other Sec proteins was studied in Escherichia coli. SecF overproduction resulted in the simultaneous overproduction of SecD encoded by the tac-secD gene on a plasmid. Deletion of the orf6 gene, located downstream of the secF gene, had no effect on SecD overproduction. A pulse-chase experiment revealed that the overproduction was due to stabilization of SecD with SecF. SecF overproduction also resulted in the overproduction of SecY encoded by the tac-secY gene on a plasmid as well. SecF overproduction also enhanced the level of SecY expressed by the chromosomal secY gene. This SecF effect was not due to its effect on SecD or SecE, since SecF overproduction did not affect the levels of SecD and SecE expressed by the chromosomal secD and secE genes, respectively. SecE-dependent overproduction of SecY has already been demonstrated. It is suggested that SecF interacts with both SecD and SecY. SecE-SecY interaction has been demonstrated. It is likely, therefore, that all Sec proteins in the cytoplasmic membrane interact with each other.