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131.
Kasper Stovgaard Christian Andreetta Jesper Ferkinghoff-Borg Thomas Hamelryck 《BMC bioinformatics》2010,11(1):429
Background
Genome sequencing projects have expanded the gap between the amount of known protein sequences and structures. The limitations of current high resolution structure determination methods make it unlikely that this gap will disappear in the near future. Small angle X-ray scattering (SAXS) is an established low resolution method for routinely determining the structure of proteins in solution. The purpose of this study is to develop a method for the efficient calculation of accurate SAXS curves from coarse-grained protein models. Such a method can for example be used to construct a likelihood function, which is paramount for structure determination based on statistical inference. 相似文献132.
Siddhartha Kumar Bhaumik Manoj Kumar Singh Subir Karmakar Tripti De 《Glycoconjugate journal》2009,26(6):663-673
As compared to cutaneous leishmaniasis, vaccination against visceral leishmaniasis (VL) has received limited attention. In
this study, we demonstrate for the first time that an UDP-Galactose: N-acetylglucosamine β 1–4 galactosyltransferase (GenBank Accession No. EF159943) expressing attenuated LD clonal population (A-LD) is able to confer protection against the experimental challenge with the virulent LD AG83 parasite. A-LD was also effective in established leishmania infection. The vaccinated animals showed both cell mediated
(in vitro T-cell proliferation, and DTH response) and humoral responses (Th1 type). These results demonstrate the potential of the
attenuated clones as an immunotherapeutic and immunoprophylactic agent against visceral leishmaniasis. 相似文献
133.
The objective of this paper is to propose neural networks for the study of dynamic identification and prediction of a fermentation system which produces mainly 2,3-butanediol (2,3-BDL). The metabolic products of the fermentation, acetic acid, acetoin, ethanol, and 2,3-BDL were measured on-line via a mass spectrometer modified by the insertion of a dimethylvinylsilicone membrane probe. The measured data at different sampling times were included as the input and output nodes, at different learning batches, of the network. A fermentation system is usually nonlinear and dynamic in nature. Measured fermentation data obtained from the complex metabolic pathways are often difficult to be entirely included in a static process model, therefore, a dynamic model was suggested instead. In this work, neural networks were provided by a dynamic learning and prediction process that moved along the time sequence batchwise. In other words, a scheme of two-dimensional moving window (number of input nodes by the number of training data) was proposed for reading in new data while forgetting part of the old data. Proper size of the network including proper number of input/output nodes were determined by trained with the real-time fermentation data. Different number of hidden nodes under the consideration of both learning performance and computation efficiency were tested. The data size for each learning batch was determined. The performance of the learning factors such as the learning coefficient η and the momentum term coefficient α were also discussed. The effect of different dynamic learning intervals, with different starting points and the same ending point, both on the learning and prediction performance were studied. On the other hand, the effect of different dynamic learning intervals, with the same starting point and different ending points, was also investigated. The size of data sampling interval was also discussed. The performance from four different types of transfer functions, x/(1+|x|), sgn(x)·x 2/(1+x 2), 2/(1+e ? x )?1, and 1/(1+e ? x ) was compared. A scaling factor b was added to the transfer function and the effect of this factor on the learning was also evaluated. The prediction results from the time-delayed neural networks were also studied. 相似文献
134.
135.
Mamta Singhvi Dipti Joshi Shalaka Gaikaiwari Digambar V. Gokhale 《Indian journal of microbiology》2010,50(1):97-100
Method for production and regeneration of Lactobacillus delbrueckii protoplasts are described. The protoplasts were obtained by treatment with a mixture of lysozyme and mutanolysin in protoplast
buffer at pH 6.5 with different osmotic stabilizers. The protoplasts were regenerated on deMan, Rogosa and Sharpe (MRS) with
various osmotic stabilizers. Maximum protoplast formation was obtained in protoplast buffer with sucrose as an osmotic stabilizer
using a combination of lysozyme (1 mg/ml) and mutanolysin (10 μg/ml). Maximum protoplast regeneration was obtained on MRS
medium with sucrose (0.5 M) as an osmotic stabilizer. The regeneration medium was also applicable to other species of lactobacilli
as well. This is, to our knowledge, the first report on protoplast formation and efficient regeneration in case of L. delbrueckii. 相似文献
136.
It is generally perceived that landscape patterns or textures in a given protected area are spatially stationary. The findings
of this study suggest that this common perception is only partially correct. Over the course of 52 years, equilibrium in landscape
shifting was detected using digital data for the Lassen Volcanic National Park (USA). Vertical aerial photographs taken of
the park in 1941 were geo-referenced with the digital orthophoto quarter quadrangle (DOQQ) images of the same area from 1993
to identify landscape compositions and to measure change. Spatial analysis was used to observe pattern changes over time.
The results suggested that landscape development maintained equilibrium while patches were in various stages of a successional
sequence. The total area of each landscape component held steady, although over time patches throughout the landscape changed—a
shifting-mosaic steady state (SMSS). These findings reflect the limitations of contemporary environmental conservation theory.
They also suggest the importance of considering landscape change in policies that currently govern park planning and management. 相似文献
137.
138.
James A. Simmons Andrea Megela Simmons 《Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology》2011,197(5):585-594
Widely divergent vertebrates share a common central temporal mechanism for representing periodicities of acoustic waveform
events. In the auditory nerve, periodicities corresponding to frequencies or rates from about 10 Hz to over 1,000 Hz are extracted
from pure tones, from low-frequency complex sounds (e.g., 1st harmonic in bullfrog calls), from mid-frequency sounds with
low-frequency modulations (e.g., amplitude modulation rates in cat vocalizations), and from time intervals between high-frequency
transients (e.g., pulse-echo delay in bat sonar). Time locking of neuronal responses to periodicities from about 50 ms down
to 4 ms or less (about 20–300 Hz) is preserved in the auditory midbrain, where responses are dispersed across many neurons
with different onset latencies from 4–5 to 20–50 ms. Midbrain latency distributions are wide enough to encompass two or more
repetitions of successive acoustic events, so that responses to multiple, successive periods are ongoing simultaneously in
different midbrain neurons. These latencies have a previously unnoticed periodic temporal pattern that determines the specific
times for the dispersed on-responses. 相似文献
139.
Primož Pirih Bodo D. Wilts Doekele G. Stavenga 《Journal of comparative physiology. A, Neuroethology, sensory, neural, and behavioral physiology》2011,197(10):987-997
The males of many pierid butterflies have iridescent wings, which presumably function in intraspecific communication. The
iridescence is due to nanostructured ridges of the cover scales. We have studied the iridescence in the males of a few members
of Coliadinae, Gonepteryx aspasia, G. cleopatra, G. rhamni, and Colias croceus, and in two members of the Colotis group, Hebomoia glaucippe and Colotis regina. Imaging scatterometry demonstrated that the pigmentary colouration is diffuse whereas the structural colouration creates
a directional, line-shaped far-field radiation pattern. Angle-dependent reflectance measurements demonstrated that the directional
iridescence distinctly varies among closely related species. The species-dependent scale curvature determines the spatial
properties of the wing iridescence. Narrow beam illumination of flat scales results in a narrow far-field iridescence pattern,
but curved scales produce broadened patterns. The restricted spatial visibility of iridescence presumably plays a role in
intraspecific signalling. 相似文献
140.