Selective pericentromeric heterochromatin dismantling caused by TP53 activation during senescence

Cellular senescence triggers various types of heterochromatin remodeling that contribute to aging. However, the age-related mechanisms that lead to these epigenetic alterations remain elusive. Here, we asked how two key aging hallmarks, telomere shortening and constitutive heterochromatin loss, are mechanistically connected during senescence. We show that, at the onset of senescence, pericentromeric heterochromatin is specifically dismantled consisting of chromatin decondensation, accumulation of DNA breakages, illegitimate recombination and loss of DNA. This process is caused by telomere shortening or genotoxic stress by a sequence of events starting from TP53-dependent downregulation of the telomere protective protein TRF2. The resulting loss of TRF2 at pericentromeres triggers DNA breaks activating ATM, which in turn leads to heterochromatin decondensation by releasing KAP1 and Lamin B1, recombination and satellite DNA excision found in the cytosol associated with cGAS. This TP53–TRF2 axis activates the interferon response and the formation of chromosome rearrangements when the cells escape the senescent growth arrest. Overall, these results reveal the role of TP53 as pericentromeric disassembler and define the basic principles of how a TP53-dependent senescence inducer hierarchically leads to selective pericentromeric dismantling through the downregulation of TRF2.     

荧光假单胞菌抗噬菌体菌株的选育

本实验从荧光假单胞菌（Ｐｓｅｕｄｏｍｏｎａｓｆｌｕｏｒｅｓｃｅｎｓ）ＡＳ—３菌株的不正常发酵液中分离到一种噬菌体,将其命名为ＰＦＡＳ。ＡＳ—３菌株能利用葡萄糖发酵产生Ｄ－异维生素Ｃ的前体物质２－酮基－Ｄ－葡萄糖酸。电镜观察表明ＰＦＡＳ噬菌体呈蝌蚪形,具有直径为６６ｎｍ的六角形头部及长１１７ｎｍ的尾部。通过紫外线诱变及自然选育两种途径,配合简便有效的初筛方法,经多次分离、纯化、复筛最终在摇并发酵试验中获得６株产量稳定地高于对照敏感菌的抗噬菌体菌株,可望用于生产。     

Friend or Foe? Implication of the autophagy-lysosome pathway in SARS-CoV-2 infection and COVID-19

There is increasing amount of evidence indicating the close interplays between the replication cycle of SARS-CoV-2 and the autophagy-lysosome pathway in the host cells. While autophagy machinery is known to either assist or inhibit the viral replication process, the reciprocal effects of the SARS-CoV-2 on the autophagy-lysosome pathway have also been increasingly appreciated. More importantly, despite the disappointing results from the clinical trials of chloroquine and hydroxychloroquine in treatment of COVID-19, there is still ongoing effort in discovering new therapeutics targeting the autophagy-lysosome pathway. In this review, we provide an update-to-date summary of the interplays between the autophagy-lysosome pathway in the host cells and the pathogen SARS-CoV-2 at the molecular level, to highlight the prognostic value of autophagy markers in COVID-19 patients and to discuss the potential of developing novel therapeutic strategies for COVID-19 by targeting the autophagy-lysosome pathway. Thus, understanding the nature of such interactions between SARS-CoV-2 and the autophagy-lysosome pathway in the host cells is expected to provide novel strategies in battling against this global pandemic.     

金合欢根瘤菌的几种酶活特性

金合欢根瘤菌Rhizobium sp.(Acacia farnesiana)的氧化酶、过氧化氢酶、脲酶、青霉素酶和β-半乳糖苷酶均呈阳性。经过酶活性定量测定表明金合欢根瘤菌有葡萄糖酸-6-磷酸脱氢酶(6PGD)和β-半乳糖苷酶的酶活性,而慢生型大豆根瘤菌未测到上述两种酶活性。根据聚丙烯酰胺凝胶电泳酯酶图谱,6株金合欢根瘤菌可分成两群:酋株AF1、AF2和AF3的酯酶图谱中有A带,AF4、AF5和AF6的酯酶图谱中没有A带。     

Long COVID and its Management

The pandemic of COVID-19 is the biggest public health crisis in 21^st Century. Besides the acute symptoms after infection, patients and society are also being challenged by the long-term health complications associated with COVID-19, commonly known as long COVID. While health professionals work hard to find proper treatments, large amount of knowledge has been accumulated in recent years. In order to deal with long COVID efficiently, it is important for people to keep up with current progresses and take proactive actions on long COVID. For this purpose, this review will first introduce the general background of long COVID, and then discuss its risk factors, diagnostic indicators and management strategies. This review will serve as a useful resource for people to understand and prepare for long COVID that will be with us in the foreseeable future.     

一株纤维素降解真菌的筛选、鉴定及酶学性质分析

通过对富含枯枝败叶的土壤样品进行富集培养,利用刚果红纤维素培养基初筛和酶活测定复筛得到产纤维素酶的一株真菌,将其命名为GC2-2,并对该菌株进行鉴定及酶学性质研究。结果表明该菌株是一株耐高温、碱性纤维素酶的真菌GC2-2。通过18S rDNA分子克隆测定,该菌为球孢枝孢菌,其滤纸酶的活力优于CMC酶的活力。该菌所产酶的最适反应条件为温度35°C,最适pH值7.5。     

栓孔菌属漆酶高产菌株的初步筛选及其产酶条件的优化

利用显色反应对栓孔菌属(Trametes)进行了漆酶高产菌株的筛选,并对目标菌株的产酶条件进行了优化,在添加愈创木酚的固体培养基中,通过显色反应初步筛选出漆酶高产菌株东方栓孔菌Trametes orientalis Cui 6300;进一步通过单因子分析、正交试验和ABTS法确定了菌株Cui 6300的最适产酶条件:麦芽糖15 g/L,蛋白胨3 g/L,pH 4.8,Cu2+2.0 mmol/L,培养温度28°C,接种饼直径1.5 cm,此时酶活最高可达19.923 U/mL;同时探索了Cu2+浓度及添加时间对其菌丝生物量和漆酶活力的影响。研究表明,Cu2+最适添加浓度为2.0 mmol/L,添加时间为接种后第3天。     

DCD不同施用时间对小麦生长期N2O排放的影响

通过田间试验,采用静态箱法研究相同施肥条件下,DCD不同施用时间(基肥配施,追肥配施,基追肥按比例配施)对麦季N2O排放的影响.结果表明,小麦生长期施肥配施DCD减少麦季N2O排放.从小麦整个生长季来看,与尿素处理相比,基肥配施减少N2O排放21％,追肥配施减少N2O排放26％,基追肥按比例配施减少N2O排放35％,方差分析均达显著水平(P＜0.05),其中基肥配施主要减少小麦播种-返青期N2O排放,追肥配施主要减少小麦返青-成熟期N2O排放,而基追肥按比例配施DCD减少整个小麦生长季N2O排放.在小麦的整个生长阶段,施加DCD处理的土壤NH+4-N浓度和表观硝化率均高于未施加DCD的处理,且土壤NH+4-N浓度随时间的延长而降低.在小麦播种-返青期,基肥配施处理和基追肥按比例配施处理土壤NH+4-N浓度和表观硝化率高于追肥配施处理和对照处理;在小麦的返青-成熟期,追肥配施处理和基追肥按比例配施处理土壤NH+4-N浓度和表观硝化率高于基肥配施处理和对照处理.从小麦产量来看,与尿素处理相比,基肥配施和基追肥按比例配施显著增加小麦产量,而追肥配施处理小麦产量无显著性差异.基追肥按比例配施DCD在提高小麦产量的同时显著减少N2O排放,具有大田推广的现实意义;基肥与追肥配施DCD对N2O减排效果除了与施用时间有关外,还应将降雨或灌溉量的年际变化考虑在内.     

杉木人工林下原生与引入树种叶性状变异特征

叶性状在表征植物资源利用和生存策略方面具有重要作用。构建异龄复层林是改造人工纯林的有效措施,探究引入与原生树种叶性状变异有利于林下伴生树种的筛选。研究了引入乔灌木树种(如闽楠、蚊母树等13个树种)与原生乔灌木树种(苦槠、红紫珠等6个树种)的叶片形态、光合色素、碳氮磷生态化学计量和非结构性碳水化合物特征。结果表明:(1)总体上引入与原生乔木和灌木树种的叶形态性状差异较小,原生乔木的叶长和比叶面积显著小于引入树种与原生灌木。引入与原生树种间光合色素具有显著差异,引入乔木叶绿素含量显著高于原生乔木,不同功能群植物的比叶面积.叶绿素关系格局存在策略位移现象。引入树种叶碳含量显著大于原生树种,叶氮和叶磷含量显著大于原生乔木;引入树种和原生灌木的碳、氮、磷养分含量的变异系数较大;引入与原生树种叶碳氮磷生态化学计量没有一致变化规律。引入灌木叶可溶性糖含量、原生灌木淀粉含量均显著高于乔木树种,灌木的非结构性碳水化合物总量也显著高于乔木。(2)引入与原生树种叶性状呈显著协同变化趋势。所有叶性状中,比叶面积、叶绿素含量、叶氮含量、叶磷含量在乔木和灌木中均呈极显著正相关关系。主成分分析显示,引入乔木和灌木树种的叶性状接近,引入树种与原生灌木之间叶性状差异相对较小,但与原生乔木间的叶性状差异较大。总体上引入树种的叶性状与原生树种具有趋同适应特征,但不同生活型植物叶性状在林下弱光环境中仍产生一定分异,引入灌木可能比引入乔木更适应杉木林下生境。     

ABC转运蛋白基因slnTI和slnTII与盐霉素生物合成的相关性

【目的】slnTI和slnTII是盐霉素生物合成基因簇中可能的两个转运蛋白基因,根据生物信息学的分析推测它们属于ABC转运蛋白家族。其中,slnTI编码ABC转运蛋白的ATP结合亚基,slnTII编码ABC转运蛋白的跨膜亚基,推测它们可能与盐霉素的外排有关。通过slnTI和slnTII的基因中断与超量表达研究它们对盐霉素生物合成产量和抗性的影响。【方法】利用REDIRECT?技术,在盐霉素产生菌白色链霉菌XM211中分别构建了slnTI和slnTII的基因置换突变株LJ01和LJ02,并通过基因回补对突变株进行了验证。利用整合型表达载体pPM927在白色链霉菌XM211中对slnTI和slnTII进行串联超量表达。将slnTI和slnTII导入变铅青链霉菌1326中进行异源表达,通过液体培养实验检测衍生菌株对盐霉素的抗性。【结果】相比出发菌株XM211,突变株LJ01中盐霉素的产量下降了27.2%,LJ02下降了45.4%,LJ01和LJ02中结构基因slnA3和调控基因slnR的转录水平都有明显降低。超量表达菌株LJ03中盐霉素的产量提高了14.6%,转录结果显示LJ03中不仅slnTI和slnTII自身转录水平有大幅提高,而且slnA3和slnR转录水平也显著升高。抗性检测结果表明,异源表达菌株变铅青链霉菌LJ04对盐霉素的抗性水平略有提高。【结论】slnTI和slnTII是与盐霉素生物合成和外排有关的ABC转运蛋白基因,但并不是白色链霉菌XM211对盐霉素的主要抗性基因。