The prevalence of antimicrobial‐resistant Escherichia coli in sympatric wild rodents varies by season and host

Aims: To investigate the prevalence and temporal patterns of antimicrobial resistance in wild rodents with no apparent exposure to antimicrobials. Methods and Results: Two sympatric populations of bank voles and wood mice were trapped and individually monitored over a 2‐ year period for faecal carriage of antimicrobial‐resistant Escherichia coli. High prevalences of ampicillin‐, chloramphenicol‐, tetracycline‐ and trimethoprim‐resistant E. coli were observed. A markedly higher prevalence of antimicrobial‐resistant E. coli was found in wood mice than in bank voles, with the prevalence in both increasing over time. Superimposed on this trend was a seasonal cycle with a peak prevalence of resistant E. coli in mice in early‐ to mid‐summer and in voles in late summer and early autumn. Conclusions: These sympatric rodent species had no obvious contact with antimicrobials, and the difference in resistance profiles between rodent species and seasons suggests that factors present in their environment are unlikely to be drivers of such resistance. Significance and Impact of the Study: These findings suggest that rodents may represent a reservoir of antimicrobial‐resistant bacteria, transmissible to livestock and man. Furthermore, such findings have implications for human and veterinary medicine regarding antimicrobial usage and subsequent selection of antimicrobial‐resistant organisms.     

Reciprocal sign epistasis between frequently experimentally evolved adaptive mutations causes a rugged fitness landscape

The fitness landscape captures the relationship between genotype and evolutionary fitness and is a pervasive metaphor used to describe the possible evolutionary trajectories of adaptation. However, little is known about the actual shape of fitness landscapes, including whether valleys of low fitness create local fitness optima, acting as barriers to adaptive change. Here we provide evidence of a rugged molecular fitness landscape arising during an evolution experiment in an asexual population of Saccharomyces cerevisiae. We identify the mutations that arose during the evolution using whole-genome sequencing and use competitive fitness assays to describe the mutations individually responsible for adaptation. In addition, we find that a fitness valley between two adaptive mutations in the genes MTH1 and HXT6/HXT7 is caused by reciprocal sign epistasis, where the fitness cost of the double mutant prohibits the two mutations from being selected in the same genetic background. The constraint enforced by reciprocal sign epistasis causes the mutations to remain mutually exclusive during the experiment, even though adaptive mutations in these two genes occur several times in independent lineages during the experiment. Our results show that epistasis plays a key role during adaptation and that inter-genic interactions can act as barriers between adaptive solutions. These results also provide a new interpretation on the classic Dobzhansky-Muller model of reproductive isolation and display some surprising parallels with mutations in genes often associated with tumors.     

Interactions between carbon dioxide and oxygen in the photosynthesis of three species of marine red macroalgae

Summary

Red algae have the highest known selectivity factor (S_rel) for CO₂ over O₂ of ribulose bisphosphate carboxylase-oxygenase (RUBISCO). This allows the prediction that a red alga relying on diffusive supply of CO₂ to RUBISCO from air-equilibrated solution should have less O₂ inhibition of photosynthesis than would an otherwise similar non-red alga with a lower S_rel of RUBISCO. Furthermore, RUBISCO shows an increased S_rel values at low temperatures. The prediction that O ₂inhibition of photosynthesis should be small for marine red algae relying on diffusive CO₂ entry growing in the North Sea with an annual temperature range of 4–16°C was tested in O₂ electrode experiments at 12°C. Phycodrys rubens and Plocamium cartilagineum, which rely on diffusive CO₂ entry showed, as predicted, only a small inhibition at lower inorganic C concentrations. Palmaria palmata, which has a CO₂ concentrating mechanism, had the expected negligible O ₂ inhibition of photosynthesis at any inorganic C concentration except (non-significantly) for saturating inorganic C.     

Sorghum Insect Problems and Management

Sorghum (Sorghum bicolor) has high levels of starch,sugar,and fiber and is one of the most important energy crops in the world.Insect damage is one of the challenges that impacts sorghum biomass production.There are at least 150 insect species that can infest sorghum varieties worldwide.These insects can complete several generations within a growing season,they target various parts of sorghum plants at developmental stages,and they cause significant biomass losses.Genetic research has revealed the existence...     

Effects of bovine urine, plants and temperature on N2O and CO2 emissions from a sub-tropical soil

Grazing ruminants urinate and deposit N onto pastoral soils at rates up to 1,000 kg ha^?1, with most of this deposited N present as urea. In urine patches, nitrous oxide (N₂O) emissions can increase markedly. Soil derived CO₂ fluxes can also increase due to priming effects.While N₂O fluxes are affected by temperature, no studies have examined the interaction of pasture plants, urine and temperature on N₂O fluxes and the associated CO₂ fluxes. We postulated the response of N₂O emissions to bovine urine application would be affected by plants and temperature. Dairy cattle urine was collected, labelled with ¹⁵N, and applied at 590 kg N ha^?1 to a sub-tropical soil,with and without pasture plants at 11°, 19°, and 23°C. Over the experimental period (28 days), 0.2% (11°C with plants) to 2.2% (23°C with plants) of the applied N was emitted as N₂O. At 11°C, plants had no effect on cumulative N₂O-N fluxes, whereas at 23°C, the presence of plants significantly increased the flux, suggesting plant-derived C supply affected the N₂O producing microbes. In contrast, a significant urine application effect on the cumulative CO₂ flux was not affected by varying temperature from 11?C23°C or by growing plants in the soil. This study has shown that plants and their responses to temperature affect N₂O emissions from ruminant urine deposition. The results have significant implications for forecasting and understanding the effect of elevated soil temperatures on N₂O emissions and CO₂ fluxes from grazed pasture systems.     

High-throughput top-down fabrication of uniform magnetic particles

Ion Beam Aperture Array Lithography was applied to top-down fabrication of large dense (10(8)-10(9) particles/cm(2)) arrays of uniform micron-scale particles at rates hundreds of times faster than electron beam lithography. In this process, a large array of helium ion beamlets is formed when a stencil mask containing an array of circular openings is illuminated by a broad beam of energetic (5-8 keV) ions, and is used to write arrays of specific repetitive patterns. A commercial 5-micrometer metal mesh was used as a stencil mask; the mesh size was adjusted by shrinking the stencil openings using conformal sputter-deposition of copper. Thermal evaporation from multiple sources was utilized to form magnetic particles of varied size and thickness, including alternating layers of gold and permalloy. Evaporation of permalloy layers in the presence of a magnetic field allowed creation of particles with uniform magnetic properties and pre-determined magnetization direction. The magnetic properties of the resulting particles were characterized by Vibrating Sample Magnetometry. Since the orientation of the particles on the substrate before release into suspension is known, the orientation-dependent magnetic properties of the particles could be determined.     

桃儿七光合生理特性的地理差异研究

对中国由南向北5个种源地桃儿七(Sinopodophyllum hexandrum)的光合生理生态特性进行了研究.结果表明:(1)北部宁夏六盘山地区植株的光饱和点(LSP)和光补偿点(LCP)最高,表观光量子效率(AQY)、瞬时光能利用效率(ILUE)和最大光合速率(Pmax)最低,光合能力最差;最南部云南纳帕海植株的LSP和LCP很低,但因其AQY和ILUE最高,故其Pmax最大,强光下的光合能力最高.(2)最南部云南纳帕海和最北部甘肃兴隆山个体的羧化效率(CE)最高,且CO2补偿点(CCP)较低,因此CO2利用率较高;而较南部四川刷经寺个体的CE最低,且CCP最高,故CO2利用效率最低.(3)各种源植株叶片的叶绿素总量及叶绿素a含量无显著差异,而不同地区个体的Chla/Chlb值差异显著,最北部甘肃兴隆山植株的Chla/Chlb值最大,而南部四川刷经寺的Chla/Chlb值最小.(4)各种源地植株的水分利用效率(WUE)和蒸腾速率(Tr)对光量子通量密度(PFD)与CO2浓度的响应过程也表现出显著的地理分异.总的来看,桃儿七是一种喜光但又较耐阴植物,但不同分布区桃儿七的光合生理生态特征已经出现了较显著的地理分化.