艾滋病病毒蛋白酶高效表达载体及体外活性检测系统的构建

艾滋病是本世纪80年代初发现的一种烈性传染病,5年病死率为100％,致病因子为人免疫缺陷病毒,该病毒的蛋白酶在病毒复制和成熟中具有决定性的意义。由于目前国内外尚未获得艾滋病病毒蛋白酶的高效表达的重组子及活性检测系统,限制了它的研究与应用。本文利用PCR技术修饰了艾滋病病毒蛋白酶的基因,使其具有便于克隆及表达用的限制酶切位点及转录终止码,井在其C末端设置了一个可用于检验该酶活性的特殊序列。DNA序列分析揭示上述突变策略成功,将修饰后的艾滋病病毒蛋白酶基因克隆入大肠杆菌表达系统,并获得高效表达(>30％),Western-Bolt鉴定结果表明所表达的蛋白为艾滋病病毒所特有,并具有较好的生物活性。     

Mining gene expression data for positive and negative co-regulated gene clusters

MOTIVATION: Analysis of gene expression data can provide insights into the positive and negative co-regulation of genes. However, existing methods such as association rule mining are computationally expensive and the quality and quantities of the rules are sensitive to the support and confidence values. In this paper, we introduce the concept of positive and negative co-regulated gene cluster (PNCGC) that more accurately reflects the co-regulation of genes, and propose an efficient algorithm to extract PNCGCs. RESULTS: We experimented with the Yeast dataset and compared our resulting PNCGCs with the association rules generated by the Apriori mining algorithm. Our results show that our PNCGCs identify some missing co-regulations of association rules, and our algorithm greatly reduces the large number of rules involving uncorrelated genes generated by the Apriori scheme. AVAILABILITY: The software is available upon request.     

Effect of amino acids on cryopreservation of cynomolgus monkey (Macaca fascicularis) sperm

The effects of three amino acids (proline, glutamine, and glycine) added to the freezing medium Tes-Tris-egg yolk (TTE) for cryopreservation of cynomolgus monkey (Macaca fascicularis) spermatozoa were studied. This is the first report on the effects of amino acids on nonhuman primate sperm cryopreservation. The addition of 5mM proline, 10mM glutamine, and 10 or 20mM glycine each significantly improved post-thaw sperm motility and membrane and acrosome integrity compared with the control (TTE alone). However, a significant decrease in motility and membrane/acrosome integrity was observed when amino acid concentrations increased to 60mM for proline and glutamine, and 80 mM for glycine. The results suggest that adding a limited amount of amino acids to the freezing media is beneficial for freezing cynomolgus monkey sperm.     

离子注入花生四烯酸产生菌诱变选育

利用离子束注入生物技术对花生四烯酸产生菌(Mortierella alpina)进行诱变高产菌筛选。筛选到高产菌I₄₉N₁₈,该菌每升培养液可得生物量30.80g(约4%的含水量),干菌体油脂含量为25.8%,其中花生四烯酸的含量占总.脂的45.37%。30L和250L发酵罐发酵试验,该高产菌的花生.四烯酸得率为4.0g/L。     

Biochar’s effect on crop productivity and the dependence on experimental conditions—a meta-analysis of literature data

Background and aims

For the last decade, there has been an increasing global interest in using biochar to mitigate climate change by storing carbon in soil. However, there is a lack of detailed knowledge on the impact of biochar on the crop productivity in different agricultural systems. The objective of this study was to quantify the effect of biochar soil amendment (BSA) on crop productivity and to analyze the dependence of responses on experimental conditions.

Methods

A weighted meta-analysis was conducted based on data from 103 studies published up to April, 2013. The effect of BSA on crop productivity was quantified by characterizing experimental conditions.

Results

In the published experiments, with biochar amendment rates generally <30 t ha^?1, BSA increased crop productivity by 11.0 % on average, while the responses varied with experimental conditions. Greater responses were found in pot experiments than in field, in acid than in neutral soils, in sandy textured than in loam and silt soils. Crop response in field experiments was greater for dry land crops (10.6 % on average) than for paddy rice (5.6 % on average). This result, associated with the higher response in acid and sandy textured soils, suggests both a liming and an aggregating/moistening effect of BSA.

Conclusions

The analysis suggests a promising role for BSA in improving crop productivity especially for dry land crops, and in acid, poor-structured soils though there was wide variation with soil, crop and biochar properties. Long-term field studies are needed to elucidate the persistence of BSA’s effect and the mechanisms for improving crop production in a wide range of agricultural conditions. At current prices and C-trading schemes, however, BSA would not be cost-effective unless persistent soil improvement and crop response can be demonstrated.     

油菜菌核病危害损失的初步研究

本文就油菜菌核病病情、发病期及发病部位与油菜产量损失的相互关系进行了模似研究。结果表明：病斑绕茎度是影响产量的主要因素,其大小与产量损失成正相关,而病斑纵向长度与产量损失无明显相关性;发病期不同产量差异显著,以初花期发病产量损失最重,发病期与产量损失线性相关,可利用线性回归方程对产量损失进行预测;主茎发病部位愈近基部,枝条发病部位愈趋于主茎,单株产量损失率愈高。     

大豆异黄酮代谢途径在大肠杆菌中的构建及表达

自然界异黄酮合成途径主要存在于豆科植物中。以微生物为宿主研究异黄酮代谢,则需要将整个相关代谢途径的多酶体系组装到工程菌种,从而进行表达及代谢研究,这就需要用到多基因的转化和共表达技术。综合应用了多基因单载体和多基因多载体方法,将大豆异黄酮代谢途径中的五个关键酶基因导入到大肠杆菌中,对异黄酮代谢途径在大肠杆菌中的构建和表达进行了研究和探索,获得了含有五个外源基因的重组大肠杆菌;重组菌经IPTG诱导,以L-酪氨酸为底物进行发酵,发酵产物经过HPLC测定,结果表明和空白对照相比有新的代谢产物生成,初步断定为异黄酮类化合物。     

东北山地水生鞘翅目昆虫多样性的比较研究

调查了东北长白山自然保护区及辽宁省医巫闾山两地静水水体中水生甲虫．结果表明,长白山阔叶红松林生态系统水生甲虫比辽宁医巫闾山农林复合生态系统水生甲虫物种丰富的多．长白山水生甲虫共有１７个属２９个种,而辽宁医巫闾山水生甲虫只有１０个属１３个种．两地水生甲虫Ｓｈａｎｎｏｎ多样性指数分别为２．１２４、１．６４３,Ｓｈａｎｎｏｎ均匀度分别为１．２６０、０．６４１,两种不同生态系统中的水生甲虫物种多度分布较好地拟合于对数级数模型,均以少数物种为优势种,其中长白山自然保护区水生甲虫以Ｈｙｄｒｏｇｌｙｐｈｕｓｊａｐｏｎｉｃｕｓ、Ｈａｌｉｐｌｕｓｓｉｍｐｌｅｘ为优势种,辽宁医巫闾山水生甲虫则以Ｈｙｄｒｏｇｌｙｐｈｕｓｐｕｓｉｌｕｓ、Ａｇａｂｕｓｕｓｕｒｉｅｎｓｉｓ、Ａｇａｂｕｓｂｒａｎｄｔｉ占优势．     

明永冰川垂直气候带中可培养低温细菌多样性分析

本研究对位于云南滇西北的明永冰川地区暖温带、中温带和寒温带三个不同垂直气候带中可培养低温细菌的多样性进行了研究。利用四种不同培养基对该地区可培养低温细菌进行了分离纯化,共得到细菌37 513株,根据菌落形态特征分为了391种,其中LB培养基分离到99种,Organic培养基分离到78种,PSG培养基分离到96种,PYGV培养基分离得到118种,可以看出寡营养培养基PYGV分离得到的细菌种类多于LB和Organnic等富营养培养基,表明PYGV针对冰川地区细菌的分离与鉴定更为合适;通过革兰氏染色和扫描电镜观察表明大部分菌株为革兰阴性杆菌;对已分离得到的优势菌进行了16S rRNA基因测序并构建系统发育树,分析得出:假单胞菌属(Pseudomonas)、耶尔森氏菌属(Yersinia)和黄杆菌属(Flavobacterium)在明永冰川不同垂直气候带上均有分布,其中假单胞菌属最多占据35%;而寡养单胞菌属(Stenotrophomonas)是寒温带上特有的菌属。本研究证明明永冰川地区垂直气候带中可培养低温细菌多样性非常丰富,也为下一步了解这一特殊地理生态环境下微生物的群落演替规律、研究冰川环境中微生物群落如何响应气候变化提供了参考。