Characterization of new microsatellite markers in mung bean,Vigna radiata (L.)

The present work reports the isolation and characterization of new polymorphic microsatellites in mung bean (Vigna radiata L.). Of 93 designed primer pairs, seven were found to amplify polymorphic microsatellite loci, which were then characterized using 34 mung bean accessions. The number of alleles ranged from two to five alleles per locus with an average of three alleles. Observed and expected heterozygosity values ranged from 0 to 0.088 and from 0.275 to 0.683, respectively. All seven loci showed significant deviations from Hardy–Weinberg equilibrium, whereas only one pairwise combination (GBssr‐MB77 and GBssr‐MB91) exhibited significant departure from linkage disequilibrium. These newly developed markers are currently being utilized for diversity assessment within the mung bean germplasm collection of the Korean Gene Bank.     

Bartonella Genotypes in Fleas (Insecta: Siphonaptera) Collected from Rodents in the Negev Desert,Israel

Fleas collected from rodents in the Negev Desert in southern Israel were molecularly screened for Bartonella species. A total of 1,148 fleas, collected from 122 rodents belonging to six species, were pooled in 245 pools based on flea species, sex, and rodent host species. Two Bartonella gene fragments, corresponding to RNA polymerase B (rpoB) and citrate synthase (gltA), were targeted, and 94 and 74 flea pools were found positive by PCR, respectively. The Bartonella 16S-23S internal transcribed spacer (ITS) region was also targeted, and 66 flea pools were found to be positive by PCR. Sixteen different Bartonella gltA genotypes were detected in 94 positive flea pools collected from 5 different rodent species, indicating that fleas collected from each rodent species can harbor several Bartonella genotypes. Based on gltA analysis, identified Bartonella genotypes were highly similar or identical to strains previously detected in rodent species from different parts of the world. A gltA fragment 100% similar to Bartonella henselae was detected in one flea pool. Another 2 flea pools contained gltA fragments that were closely related to B. henselae (98% similarity). The high sequence similarities to the zoonotic pathogen B. henselae warrant further investigation.Bartonellae are small Gram-negative bacilli belonging to the alpha-2 subdivision of the Proteobacteria. Different Bartonella species were detected in a wide range of vertebrate animals. There are currently 30 known species or subspecies, among which 14 have been associated with human diseases (7). Bartonella organisms are parasites of mammalian erythrocytes and endothelial cells and are transmitted by fleas and lice and potentially by other blood-feeding arthropods such as ticks and flies (2). Infection in the natural host commonly causes a chronic bacteremia, which is asymptomatic in most cases.Rodents are being extensively studied and were found to have a high prevalence of Bartonella infection, with a high diversity of Bartonella spp. and strains (3). The close contacts between human and rodent populations around the world create excellent conditions for transmission of Bartonella spp. from animals to humans (28). The transmission routes of Bartonella bacteria by arthropod vectors among rodents and between rodents and other mammalian hosts have public health implications. In order to understand the extent to which rodents serve as source of human infections, investigations of rodent-borne Bartonella are essential (28). A few cases of human infections with Bartonella bacteria of rodent origin have been reported: B. elizabethae was associated with endocarditis, B. washoensis was associated with cases of myocarditis and meningitis, B. vinsonii subsp. arupensis was reported to cause fever and neurologic symptoms, and B. grahamii was isolated from the intraocular fluids of a patient with neuroretinitis (5, 11, 12, 25, 29).An earlier survey carried out in the Tel Aviv region, Israel, demonstrated the occurrence of Bartonella strains closely related to B. elizabethae and B. tribocorum in commensal rats (Rattus rattus) (8). Another study has surveyed wild rodents and their fleas for Bartonella spp. in 19 geographical locations in Israel from the Upper Galilee in the north to Beer Sheba in the south. Bartonella DNA was detected in spleen samples of 19 out of 79 (24%) black rats (R. rattus), in 1 of 4 (25%) Cairo spiny mice (Acomys cahirinus), and in 15 of 34 (44%) flea pools collected from black rats (R. rattus) (21). The objectives of the current study were to screen fleas collected from rodents inhabiting the Negev Desert south to Beer Sheba for Bartonella infection and to compare Bartonella prevalences between male and female fleas.     

Scale‐invariance of niche breadth in fleas parasitic on small mammals

The resource specialization or niche breadth of a species is not fixed across populations, but instead varies over geographical space. A species may be a local specialist but a regional generalist, if it uses locally few resources that are substitutable across locations. In contrast, a species is a local generalist and a regional specialist if it uses locally many resources that cannot be substituted from 1 location to the next. Scale‐dependence can thus be a major factor in estimation of niche breadth. Here, we test for relationships between local and global estimates of host specificity (a measure of niche breadth for parasites) in fleas (Siphonaptera) parasitic on small mammals from 49 different regions within the Holarctic. Across all fleas, we found a strong, positive relationship between the number of host species that a flea uses in 1 locality and the number of different host species that can serve as the flea's principal host (i.e. the one supporting the most fleas in a region) among all regions. Also, we observed a strong positive relationship between the taxonomic distinctness of the host species used in 1 locality and that of all known principal hosts among all localities. These relationships held after correcting for potentially confounding phylogenetic influences. We discuss the implications of scale‐independent host specificity and its association with geographical range size and species‐specific patterns of host use.     

Searching for general patterns in parasite ecology: host identity versus environmental influence on gamasid mite assemblages in small mammals

The abundance and diversity of parasites vary among different populations of host species. In some host-parasite associations, much of the variation seems to depend on the identity of the host species, whereas in other cases it is better explained by local environmental conditions. The few parasite taxa investigated to date make it difficult to discern any general pattern governing large-scale variation in abundance or diversity. Here, we test whether the abundance and diversity of gamasid mites parasitic on small mammals across different regions of the Palaearctic are determined mainly by host identity or by parameters of the abiotic environment. Using data from 42 host species from 26 distinct regions, we found that mite abundances on different populations of the same host species were more similar to each other than expected by chance, and varied significantly among host species, with half of the variance among samples explained by differences between host species. A similar but less pronounced pattern was observed for mite diversity, measured both as species richness and as the taxonomic distinctness of mite species within an assemblage. Strong environmental effects were also observed, with local temperature and precipitation correlating with mite abundance and species richness, respectively, across populations of the same host species, for many of the host species examined. These results are compared to those obtained for other groups of parasites, notably fleas, and discussed in light of attempts to find general rules governing the geographical variation in the abundance and diversity of parasite assemblages.     

Development of polymorphic microsatellite markers in sesame (Sesamum indicum L.)

Fifty microsatellite sequences (SSRs) were isolated from an enriched library of sesame (Sesamum indicum L.) using a modified protocol. After screening, 10 polymorphic microsatellites were used to determine their usefulness in diversity analysis among 16 sesame accessions. The number of alleles ranged from three to six alleles per locus with an average of 4.6 alleles. The fragment size varied from 150 bp to 307 bp. Expected heterozygosites (H_E) and polymorphism information contents (PICs) ranged from 0.437 to 0.858 and 0.34 to 0.80, respectively, which indicates the highly informative nature of the microsatellites reported here. These microsatellite markers will be very useful in diversity analysis among a large germplasm collection of sesame present in our Korean gene bank and also in the establishment of its core collection.     

Can interaction coefficients be determined from census data? Testing two estimation methods with Negev Desert rodents

Two approaches based on regression models are proposed to estimate competition from census data. The "static" approach is based on censuses of population sizes among species at one point in time over many sites. The "dynamic" approach relies on a time series of species abundance data to examine whether per capita changes in one species are associated with the abundance of other species. We estimated competition interactions in a Negev rodent community consisting of 10 species using both approaches, basing on 8 years (16 half-year periods) of observations. The static approach revealed significant competitive interactions in four of 45 pairs of species, whereas the dynamic approach did so in the same four plus two more pairs. For each species pair, both approaches revealed significant negative interactions in only 1–4 of 16 seasons. The static approach provided nearly symmetric estimations of competition, whereas estimations of dynamic approach were asymmetric. Moreover, estimations of the two approaches did not coincide in time. Cases of negative interactions recorded by the static approach were more frequent at peak and increase phases of population density dynamics, whereas those recorded by the dynamic approach were more frequent at peak and decline phases. Results of field removal experiments with Mus musculus and Gerbillus dasyurus supported predictions of dynamic but not static approaches. We hypothesized that in harsh and fluctuating desert environments that disrupt equilibrium, the dynamic approach indicates true (exploitation) competition, whereas the static approach reflects negative interspecific spatial association (interference).     

Are cryptic species of the Lesser Egyptian Jerboa,Jaculus jaculus (Rodentia,Dipodidae), really cryptic? Re‐evaluation of their taxonomic status with new data from Israel and Sinai

Two clades of the lesser Egyptian jerboa Jaculus jaculus sensu lato were recently described in North Africa and considered as cryptic species. Members of both clades are also found in Israel, where they can be easily identified according to fur and tail colouration and morphology of the male external genitalia, but cannot be separated confidently using skull characters. Examination of type specimens demonstrated that the correct names for the two species are Jaculus jaculus (Linnaeus 1758) and Jaculus hirtipes (Lichtenstein, 1823). Comparisons of geographic and habitat differences of the two species revealed a high niche divergence between them, slightly higher in the sympatric North African populations than in the parapatric populations of Israel and Sinai. A low niche divergence was detected between North African and Middle Eastern populations of J. jaculus, and a low niche convergence between North African and Middle Eastern populations of J. hirtipes. The levels of niche differentiation coincide with those of genetic differences.     

Spatial structure and niche patterns of a rodent community in the south Bukhara desert (Middle Asia)

The distribution of niches in resource space and the niche patterns of a 13 species community of Middle Asian desert rodents were studied by use of discriminant function analysis Nineteen quantitative parameters of the environment (soil structure and vegetation), measured at 600 sample plots within twenty four one ha grids, were considered The first three canonical axes of resource space account for 83% of the variance, the first axis represents a general landscape gradient from sand to clay soils, the second axis reflects a gradient of increasing productivity, and the third axis reflects a gradient of increasing protectability of the environment The distribution of niches in resource space is not even, there are two distinct spatial guilds consisting of psammophilous and sclerophilous species There is a negative correlation between niche position (distance from species centroid to the center of the resource space) and maximal population biomass At the same time there are no correlations between the niche breadth and the niche position due to the absence of species with really broad niches Rodent biomass increases along the productivity axis and reaches a peak in the middle part of the substrate axis Rodent species diversity increases along the substrate axis from sand to clay soils Changes of species diversity along productivity axis have humpshaped patterns Maximum species diversity was recorded at low level of productivity on the sandy soils and shifted to intermediate levels of productivity on sandy-loam and clay soils     

Does food‐searching ability determine habitat selection? Foraging in sand of three species of gerbilline rodents

The distribution of three gerbil species in the Negev Desert, Israel differs in relation to sandy habitats. Gerbillus gerbillus occurs in sand only, Gerbillus dasyurus lives in all habitat types except sand, Gerbillus henleyi occurs in sand at high density periods only. We hypothesized that the reason for this distribution pattern is differential ability of species to forage in sand. We tested the ability of gerbils to search for seeds in sand layers of different depths and predicted that a) G. gerbillus will have equal search success at different sand depths, b) G. henleyi (which is twice smaller than G. gerbillus and G. dasyurus) will find seeds in thin layers better than in deep layers, and c) G. dasyurus will successfully find seeds in the thinnest layers only. We predicted also d) that G. gerbillus relies on olfaction for seed location, so its foraging success will be higher in searching for whole seeds than for seed kernels, whereas this will not be the case for G. henleyi and G. dasyurus. We examined the responses of the three species to odor of whole seeds vs seed kernels in Y-maze. In regards to seed depth, the search success of G. gerbillus was significantly higher when the whole seeds rather than kernels were offered in all treatments except the control, but sand depth did not influence the search success. The search success of G. dasyurus and G. henleyi did not depend on the type of seeds offered. The search success of G. dasyurus was lower in experimental (1, 3, 5 and 8 cm sand depth) than in control (1 mm sand depth) treatments, but did not differ among most experimental treatments. The search success of the smallest G. henleyi depended on sand depth for both whole seeds and kernels. Gerbillus gerbillus and G. dasyurus did not lose body masses in any treatment, whereas body mass changes of G. henleyi were influenced by the depth of sand in which gerbils foraged. No species demonstrated differences in response to whole seeds vs kernels in Y-maze tests.     

Gas exchange patterns of Pterostichus niger (Carabidae) in dry and moist air

Gas exchange patterns of adult male Pterostichus niger Schaller after hydration (i.e. given access to food and water) are compared in dry air [5–7% relative humidity (RH)] and moist air (90–97% RH) by means of flow‐through CO₂ respirometry combined with infrared probe actography. Of thirty beetles examined, slightly more than 50% showed continuous gas exchange and are not considered further. Of the remaining beetles, the majority (approximately 71%) display a pattern of cyclic gas exchange in both dry and moist air (i.e. CO₂ gas is released in bursts, with a low level of CO₂ release during the interburst periods). A minority of the beetles (four out of 30) are found to exhibit discontinuous gas exchange in both dry and moist air; this is characterized by three clearly separated states of the spiracles: closed (C), flutter (F) and open (O) phases. The pattern of cyclic gas exchange is associated with weak abdominal pulsations. After switching from moist to dry air, a small modulation of the discontinuous gas exchange cycles (maximum mean CO₂ production rate) occurs, providing no clear support for the hygric theory of discontinuous gas exchange in this species (i.e. that it serves to restrict respiratory water loss).