4种河鲀全基因组微卫星分布特征分析

本研究利用MISA软件对四种河鲀全基因组中的微卫星进行筛选并分析.结果如下:在红鳍东方鲀(Takifugu rubripes)(391.49 Mb)、菊黄东方鲀(T.flavidus)(366.29 Mb)、双斑东方鲀(T.bimaculatus)(371.68 Mb)及黑青斑河鲀(Tetraodon nigroviridis)(342.40 Mb)全基因组中,分别筛选出142 885个、135 009个、147 549个和179 703个完整型微卫星.相对丰度分别为365个/Mb,369个/Mb,397个/Mb和525个/Mb.微卫星总长度分别为2 876 322 bp,2 689 710 bp,3 140 445 bp 和3 615 069 bp,分别占基因组序列总长度的0.73％,0.73％,0.84％和1.06％.在1～6个不同碱基重复类型完整型微卫星中,四种河鲀的6种碱基类型数目排序是一致的.均是单碱基重复数目最多,然后依次是二碱基、三碱基、四碱基、五碱基和六碱基.其中AC,A,C,AG,AGG,AT,AAT和AAC是四种河鲀共有的常见核心重复类别.东方鲀属(Takifugu)三种河鲀基因组微卫星分布特征极为相似,分析红鳍东方鲀和双斑东方鲀的遗传距离可能更为接近.鲀属(Tetraodon)黑青斑河鲀与其他三种东方鲀属河鲀除部分微卫星特征相似外,在微卫星总数、微卫星相对丰度和密度、部分碱基类型数目及类别方面和东方鲀属差距较大.这可能与两属鱼类地理分布及进行滑动复制的碱基组成有关,推测东方鲀属和鲀属基因组可能具有独特的进化机制.本研究为多种河鲀基因组特征分析、多种河鲀微卫星引物设计、不同属种河鲀遗传距离及亲缘关系的探究等奠定了基础.     

Dynamically Tunable Plasmon-induced Transparency in a T-shaped Cavity Waveguide Based on Bulk Dirac Semimetals

We propose a dynamically tunable surface plasmon polaritons (SPPs) waveguide system based on bulk Dirac semimetals (BDS) containing only a side-coupled T-shaped cavity. Plasmon-induced transparency (PIT) is achieved in the terahertz band by introducing a position offset. We have analytically investigated the spectral characteristics of PIT in this system, indicating that the larger the position offset, the higher the peak of the PIT window. The spectrum responses of PIT system can be flexibly regulated via transforming the geometric parameters of the structure. At the same time, it is particularly sensitive to the refractive index of the surrounding medium, which is promising for sensing devices. In addition, the resonance frequency and peak transmission can be actively adjusted by controlling the Fermi energy of the BDS without reconstructing the geometric structure. Moreover, the optical delay time near the PIT peak reaches 11.001 ps, which has good slow-light characteristics and is a candidate in the field of slow-light equipment. The structure we designed may have potential application value in the design of SPPs light-guide devices.

     

中国公众的国际野生动物保护意愿调查: 以非洲象为例

我国高度重视野生动物保护事业, 认真履行野生动物保护国际义务, 积极鼓励公众参与, 以扩大野生动物保护事业的公众基础。已有文献多关注了公众的国内野生动物保护意愿, 鲜有文献关注公众对国际野生动物的保护意愿, 难以为促进公众参与国际野生动物保护事业提供决策参考。本研究以全球旗舰物种非洲象(Loxodonta africana)为例, 结合非洲象保护的相关研究与实践, 构建拓展的计划行为理论框架, 通过线下和线上调研获取数据, 运用结构方程模型, 从态度、规范、知觉行为控制、过去经验及个体特征五个方面, 分析了我国公众的非洲象保护意愿及影响因素。结果表明: (1) 68.5%的公众具有非洲象保护愿意; (2)公众规范(系数为0.422)、过去经验(系数为0.253)、知觉行为控制(系数为0.160)、保护态度(系数为0.156)对保护意愿存在显著的正向影响; 男性公众(系数为-0.054)的保护意愿低于女性公众; 居住在西部地区的公众(系数为0.066)保护意愿更高; (3)模型整体通过了拟合检验, 表明研究结果具有稳健性。本研究的政策建议如下: (1)明确政策导向作用, 提升公众的道德义务感和社会责任感; (2)加强宣传教育, 丰富公众知识经验, 培育公众积极的保护态度; (3)拓宽保护参与渠道, 提高公众知觉行为控制; (4)制定合理方案, 提升保护宣教等实践活动成效。     

Heterogeneous interactome between Litopenaeus vannamei plasma proteins and Vibrio parahaemolyticus outer membrane proteins

A great loss has been suffered by microbial infectious diseases under intensive shrimp farming in recent years. In this background, the understanding of shrimp innate immunity becomes an importantly scientific issue, but little is known about the heterogeneous protein–protein interaction between pathogenic cells and hosts, which is a key step for the invading microbes to infect internet organs through bloodstream. In the present study, bacterial outer membrane (OM) protein array and pull-down approaches are used to isolate both Vibrio parahaemolyticus OM proteins that bind to shrimp serum proteins and the shrimp serum proteins that interact with bacterial cells, respectively. Three interacting shrimp serum proteins, hemocyanin, β-1,3-glucan binding protein and LV_HP_RA36F08r and thirty interacting OM proteins were determined. They form 63 heterogeneous protein–protein interactions. Nine out of the 30 OM proteins were randomly demonstrated to be up-regulated or down-regulated when bacterial cells were cultured with shrimp sera, indicating the biological significance of the network. The interesting findings uncover the complexity of struggle between host immunity and bacterial infection. Compared with our previous report on heterogeneous interactome between fish grill and bacterial OM proteins, the present study further extends the investigation from lower vertebrates to invertebrates and develops a bacterial OM protein array to identify the OM proteins bound with shrimp serum proteins, which elevates the frequencies of the bound OM proteins. Our results highlight the way to determine and understand the heterogeneous interaction between hosts and microbes.     

Genetic Variations in COMT and DRD2 Modulate Attentional Bias for Affective Facial Expressions

Studies have revealed that catechol-O-methyltransferase (COMT) and dopaminegic receptor2 (DRD2) modulate human attention bias for palatable food or tobacco. However, the existing evidence about the modulations of COMT and DRD2 on attentional bias for facial expressions was still limited. In the study, 650 college students were genotyped with regard to COMT Val158Met and DRD2 TaqI A polymorphisms, and the attentional bias for facial expressions was assessed using the spatial cueing task. The results indicated that COMT Val158Met underpinned the individual difference in attentional bias for negative emotional expressions (P = 0.03) and the Met carriers showed more engagement bias for negative expressions than the Val/Val homozygote. On the contrary, DRD2 TaqIA underpinned the individual difference in attentional bias for positive expressions (P = 0.003) and individuals with TT genotype showed much more engagement bias for positive expressions than the individuals with CC genotype. Moreover, the two genes exerted significant interactions on the engagements for negative and positive expressions (P = 0.046, P = 0.005). These findings suggest that the individual differences in the attentional bias for emotional expressions are partially underpinned by the genetic polymorphisms in COMT and DRD2.     

Inhibition of Propofol Anesthesia on Functional Connectivity between LFPs in PFC during Rat Working Memory Task

Working memory (WM) refers to the temporary storage and manipulation of information necessary for performance of complex cognitive tasks. There is a growing interest in whether and how propofol anesthesia inhibits WM function. The aim of this study is to investigate the possible inhibition mechanism of propofol anesthesia based on the functional connections of multi-local field potentials (LFPs) and behavior during WM tasks. Adult SD rats were randomly divided into 3 groups: pro group (0.5 mg·kg⁻¹·min⁻¹,2 h), PRO group (0.9 mg·kg⁻¹·min⁻¹, 2 h) and control group. The experimental data were 16-channel LFPs obtained at prefrontal cortex with implanted microelectrode array in SD rats during WM tasks in Y-maze at 24, 48, 72, 96, 120 hours (day 1-day 5) after propofol anesthesia, and the behavior results of WM were recoded at the same time. Directed transfer function (DTF) method was applied to analyze the connections among LFPs directly. Furthermore, the causal networks were identified by DTF. The clustering coefficient (C), network density (D) and global efficiency (E_global) were selected to describe the functional connectivity quantitatively. The results show that: comparing with the control group, the LFPs functional connectivity in pro group were no significantly difference (p>0.05); the connectivity in PRO group were significantly decreased (p<0.05 at 24 hours, p<0.05 at 48 hours), while no significant difference at 72, 96 and 120 hours for rats (p>0.05), which were consistent with the behavior results. These findings could lead to improved understanding the mechanism of inhibition of anesthesia on WM functions from the view of connections among LFPs.     

Inhibition of Increased Circulating Tfh Cell by Anti-CD20 Monoclonal Antibody in Patients with Type 1 Diabetes

Objectives

Follicular helper T (Tfh) cells exert an important role in autoimmune diseases. Whether it might be involved in type 1 diabetes (T1D) is unknown. Our aim was to investigate the role of Tfh cells in patients with T1D and the effect of anti-CD20 monoclonal antibody (rituximab) on Tfh cells from T1D patients.

Patients and Methods

Fifty-four patients with T1D and 37 healthy controls were enrolled in the current study. 20 of those patients were treated with rituximab. The frequencies of circulating CD4⁺CXCR5⁺ICOS⁺T cells were analyzed by flow cytometry. The serum autoantibodies were detected by radioligand assay. The levels of IL-21, IL-6 and BCL-6 were assessed using ELISA and/or real-time PCR.

Results

Increased frequencies of circulating Tfh cells together with enhanced expression of IL-21 were detected in patients. The correlation between the frequencies of circulating Tfh cells and the serum autoantibodies or C-peptide level was comfirmed. After rituximab therapy, follow-up analysis demonstrated that the frequencies of circulating Tfh cell and serum IA2A were decreased. The levels of IL-21, IL-6 and Bcl-6 mRNA were decreased after treatment. Furthermore, beta cell function in 10 of 20 patients was improved.

Conclusions

These data indicate Tfh cells may participate in the T1D-relatede immune responses and B cells might play a role in the development of Tfh responses in the disease progression.     

The effect of polycyclic aromatic hydrocarbon contamination on distribution of the Sphingomonas community in the Shenfu irrigation area of Northeast China

Information about the diversity and community structure of indigenous Sphingomonas communities in natural environments is lacking. In this study, denaturing gradient gel electrophoresis (DGGE) was used to investigate Sphingomonas communities at nine selected sites from the up-, mid- and downstream regions of a wastewater channel, which once flowed with sewage containing high concentrations of polycyclic aromatic hydrocarbons (PAHs). From each region, three samples from channel sediment, rice soil and corn soil were collected. Sediment sites had significantly higher PAH contamination, followed by rice sites and corn sites. In addition, upstream sites had higher PAH accumulation, followed by mid- and downstream sites. For each sample type (sediment, rice and corn soils), the Shannon diversity indices of the Sphingomonas community increased slightly with increasing PAH contamination. Upstream sites had obviously higher diversity than mid- and downstream sites. Both cluster analysis and canonical correspondence analysis indicated that the Sphingomonas community was clearly different among sediment, rice and corn soils. Besides, the Sphingomonas community was affected by different PAH compounds in sediment, rice and corn sites. The Sphingomonas community might degrade mainly benzo[b]fluoranthene, fluorene and fluoranthene in sediment sites by co-metabolism, but degraded mainly pyrene and phenanthrene in corn and rice sites, which provides some suggestions for pollution remediation.