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991.
Gwen McCaffrey. Colin L. Willis William D. Staatz Nicole Nametz Carolyn A. Quigley Sharon Hom Jeffrey J. Lochhead Thomas P. Davis 《Journal of neurochemistry》2009,110(1):58-71
Hypoxic (low oxygen) and reperfusion (post‐hypoxic reoxygenation) phases of stroke promote an increase in microvascular permeability at tight junctions (TJs) of the blood–brain barrier (BBB) that may lead to cerebral edema. To investigate the effect of hypoxia (Hx) and reoxygenation on oligomeric assemblies of the transmembrane TJ protein occludin, rats were subjected to either normoxia (Nx, 21% O2, 60 min), Hx (6% O2, 60 min), or hypoxia/reoxygenation (H/R, 6% O2, 60 min followed by 21% O2, 10 min). After treatment, cerebral microvessels were isolated, fractionated by detergent‐free density gradient centrifugation, and occludin oligomeric assemblies associated with plasma membrane lipid rafts were solubilized by perfluoro‐octanoic acid (PFO) exclusively as high molecular weight protein complexes. Analysis by non‐reducing and reducing sodium dodecyl sulfate (SDS)–polyacrylamide gel electrophoresis/western blot of PFO‐solubilized occludin revealed that occludin oligomeric assemblies co‐localizing with ‘TJ‐associated’ raft domains contained a high molecular weight ‘structural core’ that was resistant to disassembly by either SDS or a hydrophilic reducing agent ex vivo, and by Hx and H/R conditions in vivo. However, exposure of PFO‐solubilized occludin oligomeric assemblies to SDS ex vivo revealed the non‐covalent association of a significant amount of dimeric and monomeric occludin isoforms to the disulfide‐bonded inner core, and dispersal of these non‐covalently attached occludin subunits to lipid rafts of higher density in vivo was differentially promoted by Hx and H/R. Our data suggest a model of isoform interaction within occludin oligomeric assemblies at the BBB that enables occludin to simultaneously perform a structural role in inhibiting paracellular diffusion, and a signaling role involving interactions of dimeric and monomeric occludin isoforms with a variety of regulatory molecules within different plasma membrane lipid raft domains. 相似文献
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993.
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996.
Maria Teresa Landi Nilanjan Chatterjee Lynn R. Goldin Melissa Rotunno Kevin Jacobs Meredith Yeager Qizhai Li Dario Consonni Sholom Wacholder Ryan Diver Jarmo Virtamo Zhaoming Wang Kimberly F. Doheny Cathy Laurie Rayjean Hung James D. McKay John McLaughlin Ming-Sound Tsao Yufei Wang Lars Vatten Egil Arnesen Christine Bouchard Tonu Vooder Kristian Välk Chu Chen Patrick Sulem Thorunn Rafnar Wiebke Sauter Heike Bickeböller Jenny Chang-Claude Kari Stefansson Christopher I. Amos Sharon A. Savage Margaret A. Tucker Neil E. Caporaso 《American journal of human genetics》2009,85(5):679-74
Three genetic loci for lung cancer risk have been identified by genome-wide association studies (GWAS), but inherited susceptibility to specific histologic types of lung cancer is not well established. We conducted a GWAS of lung cancer and its major histologic types, genotyping 515,922 single-nucleotide polymorphisms (SNPs) in 5739 lung cancer cases and 5848 controls from one population-based case-control study and three cohort studies. Results were combined with summary data from ten additional studies, for a total of 13,300 cases and 19,666 controls of European descent. Four studies also provided histology data for replication, resulting in 3333 adenocarcinomas (AD), 2589 squamous cell carcinomas (SQ), and 1418 small cell carcinomas (SC). In analyses by histology, rs2736100 (TERT), on chromosome 5p15.33, was associated with risk of adenocarcinoma (odds ratio [OR] = 1.23, 95% confidence interval [CI] = 1.13–1.33, p = 3.02 × 10−7), but not with other histologic types (OR = 1.01, p = 0.84 and OR = 1.00, p = 0.93 for SQ and SC, respectively). This finding was confirmed in each replication study and overall meta-analysis (OR = 1.24, 95% CI = 1.17–1.31, p = 3.74 × 10−14 for AD; OR = 0.99, p = 0.69 and OR = 0.97, p = 0.48 for SQ and SC, respectively). Other previously reported association signals on 15q25 and 6p21 were also refined, but no additional loci reached genome-wide significance. In conclusion, a lung cancer GWAS identified a distinct hereditary contribution to adenocarcinoma. 相似文献
997.
Autophagy, an intracellular degradative pathway, maintains cell homeostasis under normal and stress conditions. Nascent double-membrane autophagosomes sequester and enclose cytosolic components and organelles, and subsequently fuse with the endosomal pathway allowing content degradation. Autophagy requires fusion of autophagosomes with late endosomes, but it is not known if fusion with early endosomes is essential. We show that fusion of AVs with functional early endosomes is required for autophagy. Inhibition of early endosome function by loss of COPI subunits (β′, β, or α) results in accumulation of autophagosomes, but not an increased autophagic flux. COPI is required for ER-Golgi transport and early endosome maturation. Although loss of COPI results in the fragmentation of the Golgi, this does not induce the formation of autophagosomes. Loss of COPI causes defects in early endosome function, as both transferrin recycling and EGF internalization and degradation are impaired, and this loss of function causes an inhibition of autophagy, an accumulation of p62/SQSTM-1, and ubiquitinated proteins in autophagosomes. 相似文献
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999.
E-Chiang Lee Urvi Desai Gennady Gololobov Seokjoo Hong Xiao Feng Xuan-Chuan Yu Jason Gay Nat Wilganowski Cuihua Gao Ling-Ling Du Joan Chen Yi Hu Sharon Zhao Laura Kirkpatrick Matthias Schneider Brian P. Zambrowicz Greg Landes David R. Powell William K. Sonnenburg 《The Journal of biological chemistry》2009,284(20):13735-13745
Angiopoietin-like 3 (ANGPTL3) and angiopoietin-like 4 (ANGPTL4) are
secreted proteins that regulate triglyceride (TG) metabolism in part by
inhibiting lipoprotein lipase (LPL). Recently, we showed that treatment of
wild-type mice with monoclonal antibody (mAb) 14D12, specific for ANGPTL4,
recapitulated the Angptl4 knock-out (-/-) mouse phenotype of reduced
serum TG levels. In the present study, we mapped the region of mouse ANGPTL4
recognized by mAb 14D12 to amino acids
Gln29–His53, which we designate as specific
epitope 1 (SE1). The 14D12 mAb prevented binding of ANGPTL4 with LPL,
consistent with its ability to neutralize the LPL-inhibitory activity of
ANGPTL4. Alignment of all angiopoietin family members revealed that a sequence
similar to ANGPTL4 SE1 was present only in ANGPTL3, corresponding to amino
acids Glu32–His55. We produced a mouse mAb against
this SE1-like region in ANGPTL3. This mAb, designated 5.50.3, inhibited the
binding of ANGPTL3 to LPL and neutralized ANGPTL3-mediated inhibition of LPL
activity in vitro. Treatment of wild-type as well as hyperlipidemic
mice with mAb 5.50.3 resulted in reduced serum TG levels, recapitulating the
lipid phenotype found in Angptl3-/- mice. These results
show that the SE1 region of ANGPTL3 and ANGPTL4 functions as a domain
important for binding LPL and inhibiting its activity in vitro and
in vivo. Moreover, these results demonstrate that therapeutic
antibodies that neutralize ANGPTL4 and ANGPTL3 may be useful for treatment of
some forms of hyperlipidemia.Lipoprotein lipase
(LPL)5 plays a pivotal
role in lipid metabolism by catalyzing the hydrolysis of plasma triglycerides
(TGs). LPL is likely to be regulated by mechanisms that depend on nutritional
status and on the tissue in which it is expressed
(1–3).
Two secreted proteins, angiopoietin-like 3 (ANGPTL3) and angiopoietin-like 4
(ANGPTL4), play important roles in the regulation of LPL activity
(4,
5). ANGPTL3 and ANGPTL4 consist
of a signal peptide, an N-terminal segment containing coiled-coil domains, and
a C-terminal fibrinogen-like domain. The N-terminal segment as well as
full-length ANGPTL3 and ANGPTL4 have been shown to inhibit LPL activity, and
deletion of the N-terminal segment of ANGPTL3 and ANGPTL4 resulted in total
loss of LPL-inhibiting activity
(6,
7). These observations clearly
indicate that the N-terminal region of ANGPTL4 contains the functional domain
that inhibits LPL and affects plasma lipid levels. The coiled-coil domains
have been proposed to be responsible for oligomerization
(8); however, it is not known
whether the coiled-coil domains directly mediate the inhibition of LPL
activity.To define the physiological role of ANGPTL4 more clearly, we characterized
the pharmacological consequences of ANGPTL4 inhibition in mice treated with
the ANGPTL4-neutralizing monoclonal antibody (mAb) 14D12
(9). Injection of mAb 14D12
significantly lowered fasting TG levels in C57BL/6J mice relative to levels in
C57BL/6J mice treated with an isotype-matched anti-KLH control (KLH) mAb
(9). These reduced TG values
were similar to decreases in fasting plasma TG levels measured in
Angptl4 knock-out (-/-) mice. This study demonstrated that mAb 14D12
is a potent ANGPTL4-neutralizing antibody that is able to inhibit systemic
ANGPTL4 activity and thereby recapitulate the reduced lipid phenotype found in
Angptl4-/- mice. The readily apparent pharmacological
effect of mAb 14D12 prompted new questions about the epitope recognized by mAb
14D12 and how this antibody-antigen binding event affected ANGPTL4 function as
an LPL inhibitor.Although ANGPTL4 is able to interact directly with LPL
(10), it is not clear which
amino acids within ANGPTL4 mediate this interaction. Here we show that amino
acids Gln29–His53 of mANGPTL4 contain the epitope
for mAb 14D12. This region, hereby designated specific epitope 1 (SE1), also
defines a domain that mediates the interaction between ANGPTL4 and LPL and the
subsequent inactivation of LPL. With this information we present evidence that
ANGPTL3 also contains an SE1 region, and with antibodies specifically reactive
with ANGPTL3 SE1 we examine whether the ANGPTL3 SE1 region is involved in LPL
binding and inhibition. We also determined whether treatment of C57BL/6 mice
with an anti-ANGPTL3 SE1 mAb can recapitulate the phenotype of lower serum TG
and cholesterol levels found in Angptl3-/- mice. Finally
we tested the therapeutic potential of an anti-ANGPTL3 SE1 mAb for treatment
of hyperlipidemia in apolipoprotein E-/-
(ApoE-/-) or low density lipoprotein
receptor-/- (LDLr-/-) mice. 相似文献
1000.
Fredrik I. Andersson Anders Tryggvesson Michal Sharon Alexander V. Diemand Mirjam Classen Christoph Best Ronny Schmidt Jenny Schelin Tara M. Stanne Bernd Bukau Carol V. Robinson Susanne Witt Axel Mogk Adrian K. Clarke 《The Journal of biological chemistry》2009,284(20):13519-13532
The Clp protease is conserved among eubacteria and most eukaryotes, and
uses ATP to drive protein substrate unfolding and translocation into a chamber
of sequestered proteolytic active sites. The main constitutive Clp protease in
photosynthetic organisms has evolved into a functionally essential and
structurally intricate enzyme. The model Clp protease from the cyanobacterium
Synechococcus consists of the HSP100 molecular chaperone ClpC and a
mixed proteolytic core comprised of two distinct subunits, ClpP3 and ClpR. We
have purified the ClpP3/R complex, the first for a Clp proteolytic core
comprised of heterologous subunits. The ClpP3/R complex has unique functional
and structural features, consisting of twin heptameric rings each with an
identical ClpP33ClpR4 configuration. As predicted by its
lack of an obvious catalytic triad, the ClpR subunit is shown to be
proteolytically inactive. Interestingly, extensive modification to ClpR to
restore proteolytic activity to this subunit showed that its presence in the
core complex is not rate-limiting for the overall proteolytic activity of the
ClpCP3/R protease. Altogether, the ClpP3/R complex shows remarkable
similarities to the 20 S core of the proteasome, revealing a far greater
degree of convergent evolution than previously thought between the development
of the Clp protease in photosynthetic organisms and that of the eukaryotic 26
S proteasome.Proteases perform numerous tasks vital for cellular homeostasis in all
organisms. Much of the selective proteolysis within living cells is performed
by multisubunit chaperone-protease complexes. These proteases all share a
common two-component architecture and mode of action, with one of the best
known examples being the proteasome in archaebacteria, certain eubacteria, and
eukaryotes (1).The 20 S proteasome is a highly conserved cylindrical structure composed of
two distinct types of subunits, α and β. These are organized in
four stacked heptameric rings, with two central β-rings sandwiched
between two outer α-rings. Although the α- and β-protein
sequences are similar, it is only the latter that is proteolytic active, with
a single Thr active site at the N terminus. The barrel-shaped complex is
traversed by a central channel that widens up into three cavities. The
catalytic sites are positioned in the central chamber formed by the
β-rings, adjacent to which are two antechambers conjointly built up by
β- and α-subunits. In general, substrate entry into the core
complex is essentially blocked by the α-rings, and thus relies on the
associating regulatory partner, PAN and 19 S complexes in archaea and
eukaryotes, respectively (1).
Typically, the archaeal core structure is assembled from only one type of
α- and β-subunit, so that the central proteolytic chamber contains
14 catalytic active sites (2).
In contrast, each ring of the eukaryotic 20 S complex has seven distinct
α- and β-subunits. Moreover, only three of the seven
β-subunits in each ring are proteolytically active
(3). Having a strictly
conserved architecture, the main difference between the 20 S proteasomes is
one of complexity. In mammalian cells, the three constitutive active subunits
can even be replaced with related subunits upon induction by
γ-interferon to generate antigenic peptides presented by the class 1
major histocompatibility complex
(4).Two chambered proteases architecturally similar to the proteasome also
exist in eubacteria, HslV and ClpP. HslV is commonly thought to be the
prokaryotic counterpart to the 20 S proteasome mainly because both are Thr
proteases. A single type of HslV protein, however, forms a proteolytic chamber
consisting of twin hexameric rather than heptameric rings
(5). Also displaying structural
similarities to the proteasome is the unrelated ClpP protease. The model Clp
protease from Escherichia coli consists of a proteolytic ClpP core
flanked on one or both sides by the ATP-dependent chaperones ClpA or ClpX
(6). The ClpP proteolytic
chamber is comprised of two opposing homo-heptameric rings with the catalytic
sites harbored within (7). ClpP
alone displays only limited peptidase activity toward short unstructured
peptides (8). Larger native
protein substrates need to be recognized by ClpA or ClpX and then translocated
in an unfolded state into the ClpP proteolytic chamber
(9,
10). Inside, the unfolded
substrate is bound in an extended manner to the catalytic triads (Ser-97,
His-122, and Asp-171) and degraded into small peptide fragments that can
readily diffuse out (11).
Several adaptor proteins broaden the array of substrates degraded by a Clp
protease by binding to the associated HSP100 partner and modifying its protein
substrate specificity (12,
13). One example is the
adaptor ClpS that interacts with ClpA (EcClpA) and targets N-end rule
substrates for degradation by the ClpAP protease
(14).Like the proteasome, the Clp protease is found in a wide variety of
organisms. Besides in all eubacteria, the Clp protease also exist in mammalian
and plant mitochondria, as well as in various plastids of algae and plants. It
also occurs in the unusual plastid in Apicomplexan protozoan
(15), a family of parasites
responsible for many important medical and veterinary diseases such as
malaria. Of all these organisms, photobionts have by far the most diverse
array of Clp proteins. This was first apparent in cyanobacteria, with the
model species Synechococcus elongatus having 10 distinct Clp
proteins, four HSP100 chaperones (ClpB1–2, ClpC, and ClpX), three ClpP
proteins (ClpP1–3), a ClpP-like protein termed ClpR, and two adaptor
proteins (ClpS1–2) (16).
Of particular interest is the ClpR variant, which has protein sequence
similarity to ClpP but appears to lack the catalytic triad of Ser-type
proteases (17). This diversity
of Clp proteins is even more extreme in photosynthetic eukaryotes, with at
least 23 different Clp proteins in the higher plant Arabidopsis
thaliana, most of which are plastid-localized
(18).We have recently shown that two distinct Clp proteases exist in
Synechococcus, both of which contain mixed proteolytic cores. The
first consists of ClpP1 and ClpP2 subunits, and associates with ClpX, whereas
the other has a proteolytic core consisting of ClpP3 and ClpR that binds to
ClpC, as do the two ClpS adaptors
(19). Of these proteases, it
is the more constitutively abundant ClpCP3/R that is essential for cell
viability and growth (20,
21). It is also the ClpP3/R
complex that is homologous to the single type in eukaryotic plastids, all of
which also have ClpC as the chaperone partner
(16). In algae and plants,
however, the complexity of the plastidic Clp proteolytic core has evolved
dramatically. In Arabidopsis, the core complex consists of five ClpP
and four ClpR paralogs, along with two unrelated Clp proteins unique to higher
plants (22). Like ClpP3/R, the
plastid Clp protease in Arabidopsis is essential for normal growth
and development, and appears to function primarily as a housekeeping protease
(23,
24).One of the most striking developments in the Clp protease in photosynthetic
organisms and Apicomplexan parasites is the inclusion of ClpR within the
central proteolytic core. Although this type of Clp protease has evolved into
a vital enzyme, little is known about its activity or the exact role of ClpR
within the core complex. To address these points we have purified the intact
Synechococcus ClpP3/R proteolytic core by co-expression in E.
coli. The recombinant ClpP3/R forms a double heptameric ring complex,
with each ring having a specific ClpP3/R stoichiometry and arrangement.
Together with ClpC, the ClpP3/R complex degrades several polypeptide
substrates, but at a rate considerably slower than that by the E.
coli ClpAP protease. Interestingly, although ClpR is shown to be
proteolytically inactive, its inclusion in the core complex is not
rate-limiting to the overall activity of the ClpCP3/R protease. In general,
the results reveal remarkable similarities between the evolutionary
development of the Clp protease in photosynthetic organisms and the eukaryotic
proteasome relative to their simpler prokaryotic counterparts. 相似文献