Genetic Code-guided Protein Synthesis and Folding in Escherichia coli

Universal genetic codes are degenerated with 61 codons specifying 20 amino acids, thus creating synonymous codons for a single amino acid. Synonymous codons have been shown to affect protein properties in a given organism. To address this issue and explore how Escherichia coli selects its “codon-preferred” DNA template(s) for synthesis of proteins with required properties, we have designed synonymous codon libraries based on an antibody (scFv) sequence and carried out bacterial expression and screening for variants with altered properties. As a result, 342 codon variants have been identified, differing significantly in protein solubility and functionality while retaining the identical original amino acid sequence. The soluble expression level varied from completely insoluble aggregates to a soluble yield of ∼2.5 mg/liter, whereas the antigen-binding activity changed from no binding at all to a binding affinity of > 10⁻⁸ m. Not only does our work demonstrate the involvement of genetic codes in regulating protein synthesis and folding but it also provides a novel screening strategy for producing improved proteins without the need to substitute amino acids.     

Synthesis and biological activity of N-acyl O-indolylalkyl ethanolamines

The plant-growth regulators, indole-3-carboxylic acids, were introduced into N-acyl ethanolamines, and a series of N-acyl O-indolylalkyl ethanolamines were prepared. Their biological activities to regulate rape hypocotyl elongation, cucumber cotyledon expansion and common wheat coleoptile growth were tested. The results indicate that the title compounds inhibited rape hypocotyl elongation, especially the indole-3-propionic acid derivatives, whose bioactivity was better than that of indole-3-acetic acid.     

海南尖峰岭中华穿山甲的分布与保护现状

中华穿山甲(Manis pentadactyla)是国家I级重点保护野生动物, 被IUCN红色名录列为极危(CR)物种, 也被列入CITES附录I。分布现状信息的匮乏是制约该物种保护规划制定与保护行动开展的关键因素。本文利用红外相机陷阱法和样线调查法, 于2020年8月至2021年11月在海南尖峰岭林区进行中华穿山甲海南亚种(M. p. pusilla)的监测调查, 分析评估了其分布与保护现状。调查发现: (1)尖峰岭林区7个公里网格内的8台红外相机拍摄到10次中华穿山甲出没的影像, 且在11个网格内见到35个觅食洞穴, 其中在红外相机损失率较低的南中区域记录到的中华穿山甲实体数量和洞穴数最多; (2)中华穿山甲主要分布于尖峰岭林区400-1,000 m海拔区域, 林区的国家公园一般控制区内仍然有3台红外相机拍摄到中华穿山甲及调查记录到18个觅食洞穴。结果表明: 海南尖峰岭林区仍然存在中华穿山甲种群, 目前可能被海拔等因素隔离为3个小种群; 人为干扰是影响该物种种群恢复的重要因素之一。因此, 本文提出如下建议: (1)管理部门要落实各项管护制度并加强巡护管理力度以把人为干扰程度降到最低; (2)管理部门在今后国家公园总体规划调整时可将有中华穿山甲等极危物种分布的一般控制区调整为核心保护区, 而在未调整规划前则要重点加强该区域的管理, 对建设项目布局等要尽量避开该区域; (3)尽快开展尖峰岭林区中华穿山甲的生境适宜性分析及廊道研究, 以使该物种得到更有效的保护和管理; (4)今后要定期开展其监测与保护研究, 明确尖峰岭林区中华穿山甲种群数量的动态变化; (5)在海南岛范围内开展中华穿山甲资源调查, 明确该物种在海南的种群数量及分布等情况。     

Oroxylin A increases the sensitivity of temozolomide on glioma cells by hypoxia-inducible factor 1α/hedgehog pathway under hypoxia

Microenvironmental hypoxia-mediated drug resistance is responsible for the failure of cancer therapy. To date, the role of the hedgehog pathway in resistance to temozolomide (TMZ) under hypoxia has not been investigated. In this study, we discovered that the increasing hypoxia-inducible factor 1α (HIF-1α) activated the hedgehog pathway in hypoxic microenvironment by promoting autocrine secretion of sonic hedgehog protein (Shh), and then upregulating transfer of Gli1 to the nucleus, finally contributed to TMZ resistance in glioma cells. Oroxylin A (C16H12O5), a bioactive flavonoid, could induce HIF-1α degradation via prolyl-hydroxylases–VHL signaling pathway, resulting in the inactivation of the hedgehog. Besides, oroxylin A increased the expression of Sufu, which is a negative regulator of Gli1. By this mechanism, oroxylin A sensitized TMZ on glioma cells. U251 intracranial transplantation model and GL261 xenograft model were used to confirm the reversal effects of oroxylin A in vivo. In conclusion, our results demonstrated that HIF-1α/hedgehog pathway conferred TMZ resistance under hypoxia, and oroxylin A was capable of increasing the sensitivity of TMZ on glioma cells in vitro and in vivo by inhibiting HIF-1α/hedgehog pathway and depressing the activation of Gli1 directly.     

Berberine attenuates hypoxia-induced pulmonary arterial hypertension via bone morphogenetic protein and transforming growth factor-β signaling

Hypoxia-induced excessive pulmonary artery smooth muscle cell (PASMC) proliferation plays an important role in the pathology of pulmonary arterial hypertension (PAH). Berberine (BBR) is reported as an effective antiproliferative properties applied in clinical. However, the effect of BBR on PAH remains unclear. In the present study, we elucidated the protective effects of BBR against abnormal PASMC proliferation and vascular remodeling in chronic hypoxia-induced hearts. Furthermore, the potential mechanisms of BBR were investigated. For this purpose, C57/BL6 mice were exposed to chronic hypoxia for 4 weeks to mimic severe PAH. Hemodynamic and pulmonary pathomorphology data showed that chronic hypoxia significantly increased the right ventricular systolic pressure (RVSP), the right ventricle/left ventricle plus septum RV/(LV + S) weight ratio, and the median width of pulmonary arterioles. BBR attenuated the elevations in RVSP and RV/(LV + S) and mitigated pulmonary vascular structure remodeling. BBR also suppressed the hypoxia-induced increases in the expression of proliferating cell nuclear antigen (PCNA) and of α-smooth muscle actin. Furthermore, administration of BBR significantly increased the expression of bone morphogenetic protein type II receptor (BMPR-II) and its downstream molecules P-smad1/5 and decreased the expression of transforming growth factor-β (TGF-β) and its downstream molecules P-smad2/3. Moreover, peroxisome proliferator-activated receptor γ expression was significantly decreased in the hypoxia group, and this decrease was reversed by BBR treatment. Our study demonstrated that the protective effect of BBR against hypoxia-induced PAH in a mouse model may be achieved through altered BMPR-II and TGF-β signaling.     

Physiological and molecular mechanisms of heavy metal accumulation in nonmycorrhizal versus mycorrhizal plants

Uptake, translocation, detoxification, and sequestration of heavy metals (HMs) are key processes in plants to deal with excess amounts of HM. Under natural conditions, plant roots often establish ecto‐ and/or arbuscular‐mycorrhizae with their fungal partners, thereby altering HM accumulation in host plants. This review considers the progress in understanding the physiological and molecular mechanisms involved in HM accumulation in nonmycorrhizal versus mycorrhizal plants. In nonmycorrhizal plants, HM ions in the cells can be detoxified with the aid of several chelators. Furthermore, HMs can be sequestered in cell walls, vacuoles, and the Golgi apparatus of plants. The uptake and translocation of HMs are mediated by members of ZIPs, NRAMPs, and HMAs, and HM detoxification and sequestration are mainly modulated by members of ABCs and MTPs in nonmycorrhizal plants. Mycorrhizal‐induced changes in HM accumulation in plants are mainly due to HM sequestration by fungal partners and improvements in the nutritional and antioxidative status of host plants. Furthermore, mycorrhizal fungi can trigger the differential expression of genes involved in HM accumulation in both partners. Understanding the molecular mechanisms that underlie HM accumulation in mycorrhizal plants is crucial for the utilization of fungi and their host plants to remediate HM‐contaminated soils.     

Ecological characteristics of Abies georgei population at timberline on the north-facing slope of Baima Snow Mountain, Southwest China

Abies georgei is one of the endemic trees at timberline on Qinghai-Tibetan Plateau, but little research has been done about its timberline population. One plot was set up at timberline above 4400 m on the north-facing slope of Baima Snow Mountain in Southwest China, covering an area of 0.8 hm2. Height, DBH (diameter at breast high) or root-collar diameter of seedlings and saplings, and position were recorded for each individual. The population showed a growing trend and the number of individuals decreased with increase of DBH. The survival curve can be described by Deevy-III. The population had 2 distinct peaks of mortality: age I (seedlings, DBH = 0–5 cm) and age V-VI (DBH = 20–30 cm). The highest mortality of seedlings was due to severe climate at timberline. As the saplings grew up, the interspecific and intraspecific competition resulted in another mortality peak. Through SPPA (spatial point pattern analysis), individuals of all age-classes showed uniform, random or clumped distribution with the change of scales; however, they had mainly clumped distribution. Moreover, the relationships between individuals in different age-classes were all significantly correlated with each other. Seedlings showed the highest clumping intensity and scale.     

新型生态系统理论及其争议综述

澳大利亚Richard J Hobbs教授等近年提出的新型生态系统(Novel Ecosystems)理论认为,由于人类作用,地球生态系统经历了前所未有的变化,很多生态系统已经越过不可逆转的阈值,不可能恢复到原有状态,形成了新的生态系统,其生物要素、非生物要素和系统功能等都发生了显著改变;人类应该面对现实,必须反思传统生态保护和生态恢复的行为、政策和思维;应该致力新型生态系统的特征、属性和演替规律的研究,在管理、规划、政策、组织和技术等方面的创新。新型生态系统理论引起了很大争议。质疑者认为,由于自然作用力和人类的持续扰动,地球生态系统一直在不断变化,所以一直都是"新"的,根本没必要贴上"新型"标签;该理论基本概念模糊,理论模型不精确,缺乏严密的逻辑推理,还很不成熟;该理论无助于生态保护和生态恢复的实践,会扰乱人们的思想,没有实践价值。不过,支持者和质疑者都承认地球上很多生态系统的确遭到严重破坏,已经发生深刻演替,极有必要对这类系统的非线性机制、系统阈值、恢复力、新范式,以及破坏后的所有特征等开展研究,应该理性选择合适的修复方法,理性分析人工干预的程度及其成功的可能性,科学制定行动方案和优选标准。跟踪国际前沿,开展新型生态系统理论研究有助于丰富我国恢复生态学理论以及创新工程实践。     

两种海洋专性解烃菌降解石油的协同效应

【目的】为研究在石油降解过程中海洋专性解烃菌的协同效应。【方法】以食烷菌22CO-6、JZ9B和海杆菌PY97S为实验材料构建石油降解菌群,采用重量法、气相色谱氢火焰离子化检测器、气相色谱质谱联用及棒薄层色谱等多种手段分析、比较降解菌纯培养和降解菌群对原油的降解率及石油降解后产物的多元色谱图。【结果】构建的降解菌群22CO-6+PY97S和JZ9B+PY97S中2种专性解烃菌具有明显的协同效应。与石油烃降解菌22CO-6、JZ9B单菌降解相比,PAHs降解菌PY97S的加入,可以使原油降解率从27.81%、83.52%分别提高到64.03%和86.89%,同时促进石油中烷烃、芳香烃组分包括高分子量多环芳烃chrysene及其衍生物的降解。【结论】在石油降解过程中海洋专性解烃菌之间存在明显的协同效应,不仅可以加快石油降解,还可以彻底降解石油中生态毒性较大的高分子量化合物。