李玉乳菇(新种)：欧洲槭乳菇在亚洲的近缘种

槭乳菇Lactarius acerrimus,乳菇中仅有的具有双孢担子的物种,曾经在中国被多次报道。我们在研究了该种的馆藏凭证标本后并未证实它在中国的分布,而是在中国发现了它的近缘种李玉乳菇L. liyuanus (新种)。李玉乳菇的典型特征为：菌盖黄褐色具环纹、边缘具短毛,菌柄具窝斑,乳汁白色、不变色、具辣味,孢子具尖而高的条脊。它的担子为4孢,孢子较小具高而尖的条脊,这两点与槭乳菇明显不同。文中提供了该种的条形码ITS序列、其他多基因序列和详细的形态描述,同时给出了对国内馆藏槭乳菇标本的重新鉴定结果。     

珍稀濒危植物细果秤锤树开花生物学特性和繁育系统

为了解珍稀濒危植物细果秤锤树（Sinojackia microcarpa）开花特征和有性繁殖,对其花部形态特征、开花动态、花粉胚珠比（P/O）、柱头可授性、花粉活力、套袋试验、访花昆虫及访花频率进行观测。结果表明：（1）细果秤锤树的杂交指数（OCI）为4,单花期5~7 d,种群花期可持续20 d左右。花粉与胚珠比为4 093.21±498.56。开花后第3天的花粉活力最高（76.21%）,而开花后第7天时花粉活力较低（18.37%）。细果秤锤树柱头最适可授期在开花后第2天。（2）套袋试验表明,细果秤锤树存在部分自交不亲和性,同时不存在无融合生殖,传粉昆虫是其完成生殖过程所必需的,且异株授粉能够提高其坐果率和结籽率。细果秤锤树的访花昆虫有3目5科7种,主要访花昆虫有黄胸木蜂（Xylocopa appendiculata）、熊蜂（Bombus sp.）、胡蜂（Vespa sp.）、中华蜜蜂（Apis cerana）、黑带食蚜蝇（Episyrphus balteatus）、其中熊蜂平均访花频率最高,达（8.67±0.21） 次·h^-1。对该物种开花生物学特征与繁育系统进行深入研究,有利于进一步探究其濒危机制,为后续珍稀濒危植物的研究提供理论依据和参考。     

Systematics of Mukdenia and Oresitrophe (Saxifragaceae): Insights from genome skimming data

Oresitrophe and Mukdenia (Saxifragaceae) are epilithic sister genera used in traditional Chinese medicine. The taxonomy of Mukdenia, especially of M. acanthifolia, has been controversial. To address this, we produced plastid and mitochondrial data using genome skimming for Mukdenia acanthifolia and Mukdenia rossii, including three individuals of each species. We assembled complete plastomes, mitochondrial CDS and nuclear ribosomal ETS/ITS sequences using these data. Comparative analysis shows that the plastomes of Mukdenia and Oresitrophe are relatively conservative in terms of genome size, structure, gene content, RNA editing sites and codon usage. Five plastid regions that represent hotspots of change (trnH-psbA, psbC-trnS, trnM-atpE, petA-psbJ and ccsA-ndhD) are identified within Mukdenia, and six regions (trnH-psbA, petN-psbM, trnM-atpE, rps16-trnQ, ycf1 and ndhF) contain a higher number of species-specific parsimony-informative sites that may serve as potential DNA barcodes for species identification. To infer phylogenetic relationships between Mukdenia and Oresitrophe, we combined our data with published data based on three different datasets. The monophyly of each species (Oresitrophe rupifraga, M. acanthifolia and M. rossii) and the inferred topology ((M. rossii, M. acanthifolia), O. rupifraga) are well supported in trees reconstructed using the complete plastome sequences, but M. acanthifolia and M. rossii did not form a separate clade in the trees based on ETS + ITS data, while the mitochondrial CDS trees are not well-resolved. We found low recovery of genes in the Angiosperms353 target enrichment panel from our unenriched genome skimming data. Hybridization or incomplete lineage sorting may be the cause of discordance between trees reconstructed from organellar and nuclear data. Considering its morphological distinctiveness and our molecular phylogenetic results, we strongly recommend that M. acanthifolia be treated as a distinct species.     

Vegetable biology and breeding in the genomics era

Vegetable crops provide a rich source of essential nutrients for humanity and represent critical economic values to global rural societies. However, genetic studies of vegetable crops have lagged behind major food crops, such as rice, wheat and maize, thereby limiting the application of molecular breeding. In the past decades, genome sequencing technologies have been increasingly applied in genetic studies and breeding of vegetables. In this review, we recapitulate recent progress on reference genome construction, population genomics and the exploitation of multi-omics datasets in vegetable crops. These advances have enabled an in-depth understanding of their domestication and evolution, and facilitated the genetic dissection of numerous agronomic traits, which jointly expedites the exploitation of state-of-the-art biotechnologies in vegetable breeding. We further provide perspectives of further directions for vegetable genomics and indicate how the ever-increasing omics data could accelerate genetic, biological studies and breeding in vegetable crops.

     

Land use induced changes of organic carbon storage in soils of China

Using the data compiled from China's second national soil survey and an improved method of soil carbon bulk density, we have estimated the changes of soil organic carbon due to land use, and compared the spatial distribution and storage of soil organic carbon (SOC) in cultivated soils and noncultivated soils in China. The results reveal that ～ 57% of the cultivated soil subgroups ( ～ 31% of the total soil surface) have experienced a significant carbon loss, ranging from 40% to 10% relative to their noncultivated counterparts. The most significant carbon loss is observed for the non‐irrigated soils (dry farmland) within a semiarid/semihumid belt from northeastern to southwestern China, with the maximum loss occurring in northeast China. On the contrary, SOC has increased in the paddy and irrigated soils in northwest China. No significant change is observed for forest soils in southern China, grassland and desert soils in northwest China, as well as irrigated soils in eastern China. The SOC storage and density under noncultivated conditions in China are estimated to ～ 77.4 Pg (10¹⁵ g) and ～ 8.8 kg C m^?2, respectively, compared to a SOC storage of ～ 70.3 Pg and an average SOC density of ～ 8.0 kg C m^?2 under the present‐day conditions. This suggests a loss of ～ 7.1 Pg SOC and a decrease of ～ 0.8 kg C m^?2 SOC density due to increasing human activities, in which the loss in organic horizons has contributed to ～ 77%. This total loss of SOC in China induced by land use represents ～ 9.5% of the world's SOC decrease. This amount is equivalent to ～ 3.5 ppmv of the atmospheric CO₂ increase. Since ～ 78% of the currently cultivated soils in China have been degraded to a low/medium productivities and are responsible for most of the SOC loss, an improved land management, such as the development of irrigated and paddy land uses, would have a considerable potential in restoring the SOC storage. Assuming a restoration of ～ 50% of the lost SOC during the next 20–50 years, the soils in China would absorb ～ 3.5 Pg of carbon from the atmosphere.     

COMPLEMENTARY SEX DETERMINATION IN HYMENOPTERAN PARASITOIDS AND ITS IMPLICATIONS FOR BIOLOGICAL CONTROL

Abstract In haplodiploid Hymenoptera, unfertilized eggs produce haploid males while fertilized eggs lead to diploid females under most circumstances. Diploid males can also be produced from fertilization under a system of sex determination known as complementary sex determination (CSD). Under single-locus CSD, sex is determined by multiple alleles at a single sex locus. Individuals heterozygous at the sex locus are female while hemizygous and homozygous individuals develop as haploid and diploid males, respectively. In multiple-locus CSD, two or more loci, each with two or more alleles, determine sex. Diploid individuals are female if one or more sex loci are heterozygous, while a diploid is male only if homozygous at all sex loci. Diploid males are known to occur in 43 hymenopteran species and single-locus CSD has been demonstrated in 22 of these species. Diploid males are either developmentally inviable or sterile, so their production constitutes a genetic load. Because diploid male production is more likely under inbreeding, CSD is a form of inbreeding depression. It is crucial to preserve the diversity of sex alleles and reduce the loss of genetic variation in biological control. In the parasitoid species with single-locus CSD, certain precautionary procedures can prevent negative effects of single-locus CSD on biological control.     

含吸氢酶基因（hup）嵌合质粒的构建和吸氢酶活性在阴沟肠杆菌中的表达

以质粒ｐＲＫ４０４为载体亚克隆含大豆根瘤菌吸氢酶结构基因（ｈｕｐ）的片段,构建成嵌合质粒ｐＨＲ１１、ｐＨＲ４和ｐＨＲ１０。通过三亲本杂交将这些嵌合质粒导入无吸氢活性的Ｒｈｏｄｏｂａｃｔｅｒｓｐｈａｅｒｏｉｄｅｓ２４１菌株（Ｈｕｐ－）,均获得Ｈｕｐ＋的接合子。利用启动子检测质粒ｐＭＰ２２０证明,在ｈｕｐ对结构基因上游１．２ｋｂ内存在ｈｕｐ启动基因片段。以ｐＲＫ２０１３为助质粒可将ｐＨＲ１１导入Ｅｎｔｅｒｏｂａｃｔｅｒｃｌｏａｃａｅ和Ｋｌｅｂｓｉｅｌｌａｏｘｙｔｏｃａ等土壤固氮菌株。本文以接合子Ｅ．ｃｌｏａｃａｅＥＨ１１１３为例,通过对基因组ＤＮＡＳｏｕｔｈｅｒｎ杂交分析证明,嵌合质粒ｐＨＲ１１在ＥＨ１１１３中稳定贮存和复制。Ｈ２诱导接合子ＥＨ１１１３吸氢酶活性高表达,吸氢活性与放氢活性比值约为对照的两倍。当以延胡索酸为电子受体时,吸氢酶的吸氢作用支持菌株固氮酶活性的提高。     

蝮蛇毒碱性磷脂酶A_2基因的克隆

从蝮蛇毒腺中抽提总ＲＮＡ．利用人工合成寡核苷酸引物作逆转录,以ｃＤＮＡ为模板进行体外扩增,获得磷脂酶Ａ２（简称ＰＬＡ２）基因,克隆至ｐＢＳ－ｋｓ载体中。通过对３个碱性ＰＬＡ２（简称ＢＰＬＡ２）基因单独克隆分别作ＤＮＡ全序列分析,推导ｐｒｏ－ＢＰＬＡ２由１３８个氨基酸残基构成,与已测定的部分氨基酸序列比较,基本相符。该基因成功的克隆,不仅推导出ＢＰＬＡ２的蛋白质全序列,也为进一步开展蛇毒功能肽蛋白质工程的研究工作打下了良好的基础。