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71.
Ying Wang Brian D. Carter Susan M. Gapstur Marjorie L. McCullough Mia M. Gaudet Victoria L. Stevens 《Metabolomics : Official journal of the Metabolomic Society》2018,14(10):129
Introduction
Processing delays after blood collection is a common pre-analytical condition in large epidemiologic studies. It is critical to evaluate the suitability of blood samples with processing delays for metabolomics analysis as it is a potential source of variation that could attenuate associations between metabolites and disease outcomes.Objectives
We aimed to evaluate the reproducibility of metabolites over extended processing delays up to 48 h. We also aimed to test the reproducibility of the metabolomics platform.Methods
Blood samples were collected from 18 healthy volunteers. Blood was stored in the refrigerator and processed for plasma at 0, 15, 30, and 48 h after collection. Plasma samples were metabolically profiled using an untargeted, ultrahigh performance liquid chromatography–tandem mass spectrometry (UPLC–MS/MS) platform. Reproducibility of 1012 metabolites over processing delays and reproducibility of the platform were determined by intraclass correlation coefficients (ICCs) with variance components estimated from mixed-effects models.Results
The majority of metabolites (approximately 70% of 1012) were highly reproducible (ICCs?≥?0.75) over 15-, 30- or 48-h processing delays. Nucleotides, energy-related metabolites, peptides, and carbohydrates were most affected by processing delays. The platform was highly reproducible with a median technical ICC of 0.84 (interquartile range 0.68–0.93).Conclusion
Most metabolites measured by the UPLC–MS/MS platform show acceptable reproducibility up to 48-h processing delays. Metabolites of certain pathways need to be interpreted cautiously in relation to outcomes in epidemiologic studies with prolonged processing delays.72.
Length‐weight and length‐length relationships of four small fishes from the Atrai River,Dinajpur, Bangladesh 下载免费PDF全文
M. R. Islam S. Roy M. J. Mia A. K. M. Rohul Amin 《Zeitschrift fur angewandte Ichthyologie》2018,34(1):200-202
Length‐weight (LWRs) and length‐length relationships (LLRs) were determined for four fish species collected from the Atari River in Dinajpur of Bangladesh. Sampling took place monthly between January and June 2016, using seine nets of commercial fishermen (mesh size 4 mm). In LWRs (r2 > .927, p < .05), slope (b) was estimated as 3.191, 2.992, 3.217 and 3.109 for Acanthocobitis botia, Botia lohachata, Canthophrys gongota and Chanda nama, respectively. In LLRs (r2 > .812, p < .05), lengths i.e. TL, SL, HL and FL were highly correlated. The present study on these species would be the baseline for FishBase dataset. 相似文献
73.
Although numerous attempts have been made during the last five decades, no hybrids combining the qualities of the two commercially
most important species have been released so far. Dry seeds of Corchorus capsularis L. var. D-154 and Corchorus olitorius L. var. C.G. were irradiated with gamma rays of various intensities from 70 Kr. to 100 Kr. and were sown in the field. Abnormal
plants of the first generation showing bilobed and crinkled characters in their leaves induced by gamma rays were chosen as
male parents. 300 crosses of different combinations were made. In all 120 fruits developed into maturity. All the seeds failed
to germinate except those from the crosses ♀ C.G. (0 Kr.) × ♂ D-154 (80 Kr.) and ♀ D-154 (0 Kr.) × ♂ C.G. (70 Kr.). F1 plants from the cross ♀ C.G. (0 Kr.) × ♂ D-154 (80 Kr.) inherited the bilobed character of the male parent whereas the plants
from the other cross failed to show any sign of inheritance of the male parent. This indicated that the plants from the cross
♀ C.G. (0 Kr.) × ♂ D-154 (80 Kr.) were hybrids. These hybrids attained a greater height than the controls and were highly
fertile. 相似文献
74.
Enhanced suicidal death of erythrocytes from gene-targeted mice lacking the Cl-/HCO(3)(-) exchanger AE1 总被引:2,自引:0,他引:2
Akel A Wagner CA Kovacikova J Kasinathan RS Kiedaisch V Koka S Alper SL Bernhardt I Wieder T Huber SM Lang F 《American journal of physiology. Cell physiology》2007,292(5):C1759-C1767
Genetic defects of anion exchanger 1 (AE1) may lead to spherocytic erythrocyte morphology, severe hemolytic anemia, and/or cation leak. In normal erythrocytes, osmotic shock, Cl removal, and energy depletion activate Ca2+-permeable cation channels with Ca2+-induced suicidal erythrocyte death, i.e., surface exposure of phosphatidylserine, cell shrinkage, and membrane blebbing, all features typical for apoptosis of nucleated cells. The present experiments explored whether AE1 deficiency favors suicidal erythrocyte death. Peripheral blood erythrocyte numbers were significantly smaller in gene-targeted mice lacking AE1 (AE1/ mice) than in their wild-type littermates (AE1+/+ mice) despite increased percentages of reticulocytes (AE1/: 49%, AE1+/+: 2%), an indicator of enhanced erythropoiesis. Annexin binding, reflecting phosphatidylserine exposure, was significantly larger in AE1/erythrocytes/reticulocytes (10%) than in AE1+/+ erythrocytes (1%). Osmotic shock (addition of 400 mM sucrose), Cl removal (replacement with gluconate), or energy depletion (removal of glucose) led to significantly stronger annexin binding in AE1/ erythrocytes/reticulocytes than in AE1+/+ erythrocytes. The increase of annexin binding following exposure to the Ca2+ ionophore ionomycin (1 µM) was, however, similar in AE1/ and in AE1+/+ erythrocytes. Fluo3 fluorescence revealed markedly increased cytosolic Ca2+ permeability in AE1/ erythrocytes/reticulocytes. Clearance of carboxyfluorescein diacetate succinimidyl ester-labeled erythrocytes/reticulocytes from circulating blood was more rapid in AE1/ mice than in AE1+/+ mice and was accelerated by ionomycin treatment in both genotypes. In conclusion, lack of AE1 is associated with enhanced Ca2+ entry and subsequent scrambling of cell membrane phospholipids. annexin; cell volume; osmolarity; phosphatidylserine; energy depletion 相似文献
75.
PCR detection of hemolysin (vhh) gene in Vibrio harveyi 总被引:4,自引:0,他引:4
The Vibrio harveyi hemolysin gene (vhh), which encodes for a virulence factor involved in pathogenicity to fish and shellfish species, may be targeted for species detection or strain differentiation. Primers designed for this gene were used in detection studies of V. harveyi strains from various hosts. One primer set among four tested, could amplify the expected gene fragment in PCR using templates from all 11 V. harveyi strains studied. Detection of the presence of the hemolysin gene could therefore serve as a suitable detection marker of Vibrio harveyi isolates potentially pathogenic to fish and shrimps. 相似文献
76.
77.
Smallheer JM Wang S Laws ML Nakajima S Hu Z Han W Jacobson I Luettgen JM Rossi KA Rendina AR Knabb RM Wexler RR Lam PY Quan ML 《Bioorganic & medicinal chemistry letters》2008,18(7):2428-2433
As part of an effort to identify novel backups for previously reported pyrazole-based coagulation Factor Xa inhibitors, the pyrazole 5-carboxamide moiety was replaced by 3-(sulfonylamino)-2-piperidone. This led to the identification of a structurally diverse chemotype that was further optimized to incorporate neutral or weakly basic aryl and heteroaryl P1 groups while maintaining good potency versus Factor Xa. Substitution at the sulfonamide nitrogen provided further improvements in potency and as did introduction of alternate P4 moieties. 相似文献
78.
Drosophila melanogaster shows clinal variation along latitudinal transects on multiple continents for several phenotypes, allozyme variants, sequence variants, and chromosome inversions. Previous investigation suggests that many such clines are due to spatially varying selection rather than demographic history, but the genomic extent of such selection is unknown. To map differentiation throughout the genome, we hybridized DNA from temperate and subtropical populations to Affymetrix tiling arrays. The dense genomic sampling of variants and low level of linkage disequilibrium in D. melanogaster enabled identification of many small, differentiated regions. Many regions are differentiated in parallel in the United States and Australia, strongly supporting the idea that they are influenced by spatially varying selection. Genomic differentiation is distributed nonrandomly with respect to gene function, even in regions differentiated on only one continent, providing further evidence for the role of selection. These data provide candidate genes for phenotypes known to vary clinally and implicate interesting new processes in genotype-by-environment interactions, including chorion proteins, proteins regulating meiotic recombination and segregation, gustatory and olfactory receptors, and proteins affecting synaptic function and behavior. This portrait of differentiation provides a genomic perspective on adaptation and the maintenance of variation through spatially varying selection. 相似文献
79.
Jonathan M. Glynn Yue Yang Stanislav Vitha Aaron J. Schmitz Mia Hemmes Shin-ya Miyagishima Katherine W. Osteryoung 《The Plant journal : for cell and molecular biology》2009,59(5):700-711
Chloroplast division in plant cells is accomplished through the coordinated action of the tubulin-like FtsZ ring inside the organelle and the dynamin-like ARC5 ring outside the organelle. This coordination is facilitated by ARC6, an inner envelope protein required for both assembly of FtsZ and recruitment of ARC5. Recently, we showed that ARC6 specifies the mid-plastid positioning of the outer envelope proteins PDV1 and PDV2, which have parallel functions in dynamin recruitment. PDV2 positioning involves direct ARC6–PDV2 interaction, but PDV1 and ARC6 do not interact indicating that an additional factor functions downstream of ARC6 to position PDV1. Here, we show that PARC6 (paralog of ARC6), an ARC6-like protein unique to vascular plants, fulfills this role. Like ARC6, PARC6 is an inner envelope protein with its N-terminus exposed to the stroma and Arabidopsis parc6 mutants exhibit defects of chloroplast and FtsZ filament morphology. However, whereas ARC6 promotes FtsZ assembly, PARC6 appears to inhibit FtsZ assembly, suggesting that ARC6 and PARC6 function as antagonistic regulators of FtsZ dynamics. The FtsZ inhibitory activity of PARC6 may involve its interaction with the FtsZ-positioning factor ARC3. A PARC6–GFP fusion protein localizes both to the mid-plastid and to a single spot at one pole, reminiscent of the localization of ARC3, PDV1 and ARC5. Although PARC6 localizes PDV1, it is not required for PDV2 localization or ARC5 recruitment. Our findings indicate that PARC6, like ARC6, plays a role in coordinating the internal and external components of the chloroplast division complex, but that PARC6 has evolved distinct functions in the division process. 相似文献