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51.
In previous investigations, steroid 21-hydroxylase activity was demonstrated in human fetal kidney, thymus, and spleen tissues. In the present investigation, steroid 17 alpha-hydroxylase activity also was found in microsome-enriched preparations of human fetal kidney, thymus, and spleen tissues. 相似文献
52.
Emma Bell Angela Sherry Giovanni Pilloni Ana Suárez-Suárez Margaret A. Cramm Guillermo Cueto Ian M. Head Casey R. J. Hubert 《Environmental microbiology》2020,22(1):456-465
Thermophilic endospores are widespread in cold marine sediments where the temperature is too low to support growth and activity of thermophiles in situ. These endospores are likely expelled from warm subsurface environments and subsequently dispersed by ocean currents. The endospore upper temperature limit for survival is 140°C, which can be tolerated in repeated short exposures, potentially enabling transit through hot crustal fluids. Longer-term thermal tolerance of endospores, and how long they could persist in an environment hotter than their maximum growth temperature, is less understood. To test whether thermophilic endospores can survive prolonged exposure to high temperatures, sediments were incubated at 80–90°C for 6, 12 or 463 days. Sediments were then cooled by 10–40°C, mimicking the cooling in subsurface oil reservoirs subjected to seawater injection. Cooling the sediments induced sulfate reduction, coinciding with an enrichment of endospore-forming Clostridia. Different Desulfofundulus, Desulfohalotomaculum, Desulfallas, Desulfotomaculum and Desulfofarcimen demonstrated different thermal tolerances, with some Desulfofundulus strains surviving for >1 year at 80°C. In an oil reservoir context, heat-resistant endospore-forming sulfate-reducing bacteria have a survival advantage if they are introduced to, or are resident in, an oil reservoir normally too hot for germination and growth, explaining observations of reservoir souring following cold seawater injection. 相似文献
53.
Júlia R. de Rezende Thomas B. P. Oldenburg Tetyana Korin William D. L. Richardson Milovan Fustic Carolyn M. Aitken Bernard F. J. Bowler Angela Sherry Alexander Grigoryan Gerrit Voordouw Stephen R. Larter Ian M. Head Casey R. J. Hubert 《Environmental microbiology》2020,22(8):3049-3065
Most of the oil in low temperature, non-uplifted reservoirs is biodegraded due to millions of years of microbial activity, including via methanogenesis from crude oil. To evaluate stimulating additional methanogenesis in already heavily biodegraded oil reservoirs, oil sands samples were amended with nutrients and electron acceptors, but oil sands bitumen was the only organic substrate. Methane production was monitored for over 3000 days. Methanogenesis was observed in duplicate microcosms that were unamended, amended with sulfate or that were initially oxic, however methanogenesis was not observed in nitrate-amended controls. The highest rate of methane production was 0.15 μmol CH4 g−1 oil d−1, orders of magnitude lower than other reports of methanogenesis from lighter crude oils. Methanogenic Archaea and several potential syntrophic bacterial partners were detected following the incubations. GC–MS and FTICR–MS revealed no significant bitumen alteration for any specific compound or compound class, suggesting that the very slow methanogenesis observed was coupled to bitumen biodegradation in an unspecific manner. After 3000 days, methanogenic communities were amended with benzoate resulting in methanogenesis rates that were 110-fold greater. This suggests that oil-to-methane conversion is limited by the recalcitrant nature of oil sands bitumen, not the microbial communities resident in heavy oil reservoirs. 相似文献
54.
Jan A. Pechenik Kelly B. Richards Cecily A. Freliech Casey M. Diederich 《Invertebrate Biology》2020,139(3)
The marine gastropod Crepidula plana has an extensive latitudinal range along the eastern coast of the United States. It is usually found living within gastropod shells occupied by hermit crabs, although individuals can sometimes also be found living on rocks and on the exposed surfaces of shells. Our study sought to determine the extent to which residing inside periwinkle (Littorina littorea) shells occupied by the hermit crab Pagurus longicarpus at a study site in coastal Massachusetts compromises the fecundity of C. plana, through size limitation. The egg masses of symbiotic and free‐living females of C. plana included comparable numbers of egg capsules and embryos per female despite the smaller sizes of the symbionts; symbiotic females compensated for their smaller size by producing significantly more embryos per milligram of female body tissue than their free‐living counterparts. These data raise interesting questions about why—unlike its congener C. fornicata—C. plana has not yet become a successful invasive species. 相似文献
55.
Yaritza Escamilla Casey A. Hughes Jan Abendroth David M. Dranow Samantha Balboa Frank B. Dean James M. Bullard 《Protein science : a publication of the Protein Society》2020,29(4):905-918
Pseudomonas aeruginosa has a high potential for developing resistance to multiple antibiotics. The gene (glnS) encoding glutaminyl‐tRNA synthetase (GlnRS) from P. aeruginosa was cloned and the resulting protein characterized. GlnRS was kinetically evaluated and the KM and kcatobs, governing interactions with tRNA, were 1.0 μM and 0.15 s?1, respectively. The crystal structure of the α2 form of P. aeruginosa GlnRS was solved to 1.9 Å resolution. The amino acid sequence and structure of P. aeruginosa GlnRS were analyzed and compared to that of GlnRS from Escherichia coli. Amino acids that interact with ATP, glutamine, and tRNA are well conserved and structure overlays indicate that both GlnRS proteins conform to a similar three‐dimensional structure. GlnRS was developed into a screening platform using scintillation proximity assay technology and used to screen ~2,000 chemical compounds. Three inhibitory compounds were identified and analyzed for enzymatic inhibition as well as minimum inhibitory concentrations against clinically relevant bacterial strains. Two of the compounds, BM02E04 and BM04H03, were selected for further studies. These compounds displayed broad‐spectrum antibacterial activity and exhibited moderate inhibitory activity against mutant efflux deficient strains of P. aeruginosa and E. coli. Growth of wild‐type strains was unaffected, indicating that efflux was likely responsible for the lack of sensitivity. The global mode of action was determined using time‐kill kinetics. BM04H03 did not inhibit the growth of human cell cultures at any concentration and BM02E04 only inhibit cultures at the highest concentration tested (400 μg/ml). In conclusion, GlnRS from P. aeruginosa is shown to have a structure similar to that of E. coli GlnRS and two natural product compounds were identified as inhibitors of P. aeruginosa GlnRS with the potential for utility as lead candidates in antibacterial drug development in a time of increased antibiotic resistance. 相似文献
56.
Patterns of nest attendance in birds result from complex behaviours and influence the success of reproductive events. Incubation behaviours vary based on individual body condition, energy requirements and environmental factors. We assessed nest attendance patterns in Cinnamon Teal Spatula cyanoptera breeding in the San Luis Valley of Colorado in 2016–2017 using trail and video cameras to observe behaviours throughout incubation. We evaluated the effect of temporal, life‐history and environmental covariates on the frequency and duration of incubation recesses as well as the incubation constancy. There was considerable model uncertainty among the models used to evaluate recess frequency. Recess duration varied according to the interaction between nest age and a quadratic effect of time of day, with hens on older nests taking longer recesses in the afternoon and hens on nests earlier in incubation taking longer recesses in the morning and evening. Incubation constancy decreased with higher ambient temperatures in the study area. This study provides evidence that Cinnamon Teal modify their behaviour during incubation according to the age of the nest and the time of day. These results improve our knowledge of Cinnamon Teal breeding ecology and shed light on the behaviours that fast‐lived species may use to cope with environmental factors during nesting. 相似文献
57.
Transcriptomic Profiling of Human Pluripotent Stem Cell-derived Retinal Pigment Epithelium over Time
58.
Joost Groot Yizhou Zhou Eric Marshall Patrick Cullen Thomas Carlile Dongdong Lin Chong-Feng Xu Justin Crisafulli Chao Sun Fergal Casey Baohong Zhang Christina Alves 《Biotechnology journal》2021,16(8):2000548
In recent years, High-Throughput Sequencing (HTS) based methods to detect mutations in biotherapeutic transgene products have become a key quality step deployed during the development of manufacturing cell line clones. Previously we reported on a higher throughput, rapid mutation detection method based on amplicon sequencing (targeting transgene RNA) and detailed its implementation to facilitate cell line clone selection. By gaining experience with our assay in a diverse set of cell line development programs, we improved the computational analysis as well as experimental protocols. Here we report on these improvements as well as on a comprehensive benchmarking of our assay. We evaluated assay performance by mixing amplicon samples of a verified mutated antibody clone with a non-mutated antibody clone to generate spike-in mutations from ∼60% down to ∼0.3% frequencies. We subsequently tested the effect of 16 different sample and HTS library preparation protocols on the assay's ability to quantify mutations and on the occurrence of false-positive background error mutations (artifacts). Our evaluation confirmed assay robustness, established a high confidence limit of detection of ∼0.6%, and identified protocols that reduce error levels thereby significantly reducing a source of false positives that bottlenecked the identification of low-level true mutations. 相似文献
59.
Casey L. Pell Melanie J. Williams Eileen M. Dunne Barbara D. Porter Catherine Satzke 《PloS one》2013,8(8)
Bacterial isolates are often transported between laboratories for research and diagnostic purposes. Silica desiccant packets (SDPs), which are inexpensive and do not require freezing, were evaluated for storage and recovery of bacterial isolates. Conditions such as inoculum size, swab type and temperature of storage were investigated using ten Streptococcus pneumoniae isolates. The optimized protocol was then tested using 49 additional S. pneumoniae isolates representing 40 serogroups. Overall, S. pneumoniae growth was considered satisfactory (>100 colony forming units) for 98/109 (89.9%) and 20/20 (100%) swabs after 14 days at room temperature or 28 days at 4° C, respectively. Storage in SDPs did not impact on the ability of S. pneumoniae isolates to be subsequently serotyped. When the survival of nine other clinically relevant bacterial species was tested, seven were viable after 28 days at room temperature, the exceptions being Neisseria gonorrhoeae and Haemophilus influenzae. SDPs are suitable for transport and short-term storage of bacterial species including S. pneumoniae. 相似文献
60.
Thach Duc Tran Beverley-Ann Biggs Tuan Tran Gerard J. Casey Sarah Hanieh Julie Anne Simpson Terence Dwyer Jane Fisher 《PloS one》2013,8(10)