Using the scratch assay to study cell migration in an inquiry-based cell biology lab

Cell migration, a fundamental process in development, wound healing, and immune function, is a common topic in undergraduate cell biology courses. We developed laboratory exercises with an inquiry-based learning (IBL) approach in which cell migration could be examined with the scratch assay, adapted from the primary literature. A narrow scratch was created in a confluent monolayer of cells growing on the bottom of a cell culture dish. Migration into the resultant cell-free zone from both sides of the scratch was measured after one day using the scale bar function of a digital camera. The Chinese hamster ovary cell line was used, but any adherent cell type could be examined. Students used the scratch assay to formulate hypotheses and design experiments in which variables affecting cell migration could be investigated. For example, the effect of cytoskeletal disruption was evaluated by adding the microtubule- and microfilament-disrupting drugs, colcemid and phallacidin, respectively, to the growth medium when the scratch was made. Optimal drug concentration parameters were determined for students to reference. Low drug concentrations inhibited cell migration, while higher concentrations killed the cells. This study demonstrated that the scratch assay is an accessible IBL method for studying cell migration.     

Efficiency of Transcranial Magnetic Stimulation in Progressive Supranuclear Palsy: Estimation Using Goniometry and Dinamometry

Neurophysiology - Progressive supranuclear palsy (PSP) is a degenerative movement disorder involving gradual deterioration and death of specific brain areas. Extrapyramidal features (losing...     

Epigenetic upregulation and functional role of the mitochondrial aspartate/glutamate carrier isoform 1 in hepatocellular carcinoma

Metabolic reprogramming is a common hallmark of cancer cells. Although some biochemical features have been clarified, there is still much to learn about cancer cell metabolism and its regulation. Aspartate-glutamate carrier isoform 1 (AGC1), encoded by SLC25A12 gene, catalyzes an exchange between intramitochondrial aspartate and cytosolic glutamate plus a proton across the mitochondrial membrane, so supplying aspartate to the cytosol. SLC25A12, expressed in brain, heart, and skeletal muscle, is silenced in normal liver. Here, we demonstrate that SLC25A12 gene is reactivated in hepatocellular carcinoma (HCC) HepG2 cell line through histone acetylation and CREB recruitment. Furthermore, SLC25A12 knockdown by small interfering RNA, impairs HepG2 cell proliferation by inducing cell cycle arrest. AGC1 sustains HCC cell growth by supplying cytosolic aspartate for nucleotide biosynthesis. In addition, SLC25A12-silenced HCC cells show a strong reduction of cell migration. Overall, we have provided evidence for molecular mechanisms controlling SLC25A12 gene expression in liver and pointing to an important role for AGC1 in HCC.     

Local augmentation efficiency of Anaphes nitens (Hymenoptera,Mymaridae), the egg parasitoid of Gonipterus platensis (Coleoptera,Curculionidae)

The efficiency of local augmentation releases of the egg parasitoid Anaphes nitens to control the Eucalyptus snout‐beetle Gonipterus platensis was tested in Eucalyptus globulus plantations in Galicia (NW Spain). On May–June 2006, at two localities of Pontevedra province, the release of host egg capsules parasitized by A. nitens at a potential rate of 300 adults/ha was compared with a release density of 900 adults/ha, and a control group of eucalypts not subjected to augmentation. Parasitism rate after 1–2 weeks did not significantly increase over the control plots at both localities. The high release rate did not ensure a higher crop protection and therefore could be not economically justified. On March–April 2017, at four localities of Pontevedra province, the test was replicated by releasing 300 parasitoids/ha. Parasitism level did significantly increase over the control just in one locality. Augmentation of A. nitens at small scale generally failed to achieve a higher protection from the pest, possibly due to the large extension of the E. globulus plantations, the magnitude of the G. platensis population and the fluctuations of the established parasitoid population, whose density is in turn affected by host egg availability and density‐dependent dispersal.     

The O-specific polysaccharide structure from the lipopolysaccharide of the Gram-negative bacterium Raoultella terrigena

The structure of the repeating unit of the O-specific polysaccharide from the lipopolysaccharide of the enterobacterium Raoultella terrigena was determined by means of chemical and spectroscopical methods and was found to be a linear tetrasaccharide containing a cyclic acetal of pyruvic acid (Pyr) as depicted below.[Carbohydrate structure: see text].     

Conformational changes upon calcium binding and phosphorylation in a synthetic fragment of calmodulin

We have recently investigated by far-UV circular dichroism (CD) the effects of Ca(2+) binding and the phosphorylation of Ser 81 for the synthetic peptide CaM [54-106] encompassing the Ca(2+)-binding loops II and III and the central alpha helix of calmodulin (CaM) (Arrigoni et al., Biochemistry 2004, 43, 12788-12798). Using computational methods, we studied the changes in the secondary structure implied by these spectra with the aim to investigate the effect of Ca(2+) binding and the functional role of the phosphorylation of Ser 81 in the action of the full-length CaM. Ca(2+) binding induces the nucleation of helical structure by inducing side chain stacking of hydrophobic residues. We further investigated the effect of Ca(2+) binding by using near-UV CD spectroscopy. Molecular dynamics simulations of different fragments containing the central alpha-helix of CaM using various experimentally determined structures of CaM with bound Ca(2+) disclose the structural effects provided by the phosphorylation of Ser 81. This post-translational modification is predicted to alter the secondary structure in its surrounding and also to hinder the physiological bending of the central helix of CaM through an alteration of the hydrogen bond network established by the side chain of residue 81. Using quantum mechanical methods to predict the CD spectra for the frames obtained during the MD simulations, we are able to reproduce the relative experimental intensities in the far-UV CD spectra for our peptides. Similar conformational changes that take place in CaM [54-106] upon Ca(2+) binding and phosphorylation may occur in the full-length CaM.     

Photophysical, photochemical and electrochemical properties of a series of aromatic electron acceptors based on N-heterocycles

The electronic absorption and luminescence spectra, photoreactivity, and the electrochemical properties of a series of aromatic electron acceptors based on the 4,4′-bipyridinium, 1,2-bis(4-pyridinium)ethylene, and 2,7-diazapyrenium cations have been investigated. All these species exhibit distinctive absorption spectra and some of them show fluorescence and phosphorescence bands. The compounds based on the 1,2-bis(4-pyridinium)ethylene unit provide the interesting possibility of studying the E-Z photoisomerization of the vinylic double bond. The photophysical and photochemical properties have been also interpreted on the basis of quantum chemical calculations. All the examined compounds exhibit reduction processes at mild negative potentials that reveal their electron accepting character. We found that the photophysical, photochemical and electrochemical properties of such compounds are not only determined by the structure of the N-heterocyclic central moiety, but are also remarkably affected by the peripheral substituents linked to the quaternarized nitrogen atoms.