Initiation of DNA replication in Bacillus subtilis. V. Role of DNA gyrase and superhelical structure in initiation

Summary When spores of a thymine-requiring mutant of Bacillus subtilis were germinated in a medium lacking thymine, an initiation potential (an ability to initiate and complete one round of replication in the presence of thymine and in the absence of protein and RNA synthesis) was formed for both chromosomal and plasmid replication. The effect of two inhibitors of DNA gyrase, novobiocin (Nov) and nalidixic acid (Nal), on the initiation potential formed during germination for chromosomal and plasmid replication was examined.Nov and Nal inhibited formation of the initiation potential completely if the drug was added at the onset of germination. In contrast, initiation of chromosomal and plasmid replication occurred in the presence of DNA gyrase inhibitors when the drug was added after the initiation potential had been fully formed. However, chromosomal replication initiated in the presence of the inhibitors ceased after a fragment of approximately 15 MD (15×10⁶ daltons) had been replicated, and plasmid replication was limited to one round of replication in approximately half of the plasmid molecules present in the spores.Furthermore the initiation potential for both chromosomal and plasmid replication though established was destroyed gradually but steadily by prolonged incubation with Nov in the absence of thymine. In addition, relaxation of the superhelical structure of plasmid DNA during incubation with Nov was observed in vivo. This relaxation was blocked by ethidium bromide, which dissociated the S-complex. On the other hand, incubation with Nal did not reduce the initiation potential nor did it change the superhelicity of the plasmid DNA in vivo. This is consistent with the known effect of gyrase inhibitors on the enzymatic activity of DNA gyrase.These results clearly demonstrate that both the action of DNA gyrase and the superhelical structure of the DNA are essential for the initiation of chromosomal and plasmid replication. The specific chromosome organization essential for initiation and elongation and the role of DNA gyrase are discussed.IV of this series is Yoshikawa et al. 1980     

Chicken ornithine transacarbamylase: Its unexpected expression

Ornithine transcarbamylase (OTC), one of the enzymes of the urea cycle, is detectable in some strains of chickens, although they have no functional urea cycle. The enzyme consists of three identical subunits of 36 kd and is present in mitochondria of the kidney. Using immunoabsorbent column chromatography, we found further evidence that the enzyme is detectable as a precursor form (40 kd) in chicken brain, heart, liver, pancreas, gizzard, small intestine, and breast muscle. When an extract of small intestine containing only precursor OTC was treated with a kidney extract, the precursor was converted into OTC. This suggests that there is a tissue-specific processing protease in the kidney which splits a peptide off the precursor, causing the expression of OTC activity in this organ. However, the reason why the enzyme or its precursor is expressed in these organs is not known. The results of this study suggest that, unlike mammals, chickens are more organ specific with regard to the ability to incorporate precursor OTC into mitochondria.     

Studies on the transferrins of goats. 3. Evidence for a third transferrin allele

A new allele Tf ^c in serum transferrin of goats is postulated. It was considered that serum transferrins in goats classified into six phenotypes are genetically controlled by three codominant alleles, Tf ^A, Tf ^B and Tf ^c. Frequencies of Tf ^c were low in native goats in Korea, Philipines and Thailand, and this allele is yet to be observed in other breeds of goats.     

Edge effects created by clear-cutting on habitat use by sika deer on Mt. Goyo,northern Honshu,Japan

Clear-cutting increased the species diversity and amount of undergrowth plants in a habitat of Sika deer (Cervus nippon) on Mt. Goyo, northern Japan. The number of species increased from 15 to 48 as a result of clear-cutting. Among the plants,Sasa nipponica (a dwarf bamboo), an important forage plant for Sika deer, was predominant. Fecal pellets of deer were abundant in the forest and at the “adjacent zone” (from the edge to 150 m out of the forest) and thereafter decreased suddenly. The intensity of utilization ofSasa nipponica was also heavy in the forest, moderate at the adjacent zone and light 200 m from the forest edge. Since the amount of the bamboo in the forest was small, the removal of bamboo was greatest at the adjacent zone. Clear-cutting creates a favorable feeding area for Sika deer in this zone by increasing the available plant production and securing forest cover.     

Descriptions and biological notes of Ctenoplectra bees from Southeast Asia and Taiwan (Hymenoptera: Apidae: Ctenoplectrini) with a new species from North Borneo

Six Ctenoplectra species are recorded from Southeast Asia and Taiwan. They are C. chalybea Smith, C. cornuta Gribodo, C. davidi Vachal, C. elsei Engel, C. sandakana sp. nov. and C. vagans Cockerell. Females of C. sandakana sp. nov. from North Borneo are similar to the mainland species C. chalybea , but differ mainly in the clypeal keel and the length of the antennal segments. The small blackish species, C. cornuta , is distributed in Myanmar, China and Taiwan and C. davidi is distributed in China, Russia and Taiwan; both species are seen at the flowers of Thladiantha . Ctenoplectra chalybea was collected from the Malay Peninsula, Myanmar, Taiwan and Vietnam. Ctenoplectra apicalis Smith and C. kelloggi Cockerell are allied to C. chalybea ; however, C. kelloggi is excluded from this study due to insufficient material. A key to the six known Ctenoplectra species is given. The large metallic species, C. chalybea and C. elsei , visit flowers of Momordica cochinchinensis (Lour.) Spreng. For the first time observations on the nest structures of C. chalybea and C. cornuta are presented. They choose remarkable places, such as artificial structures and buildings, for nest sites. The nest architecture prevents rain and direct sunlight from entering the nest. Bees used pre-existing holes or crevices in wood for nesting shelters and collected soil and appeared to mix it with some other substance to build nests. The cell lining materials and rubbing behaviors against the cell wall suggest that Ctenoplectra bees use floral oil mainly for cell lining materials.     

A record of acorn eating by sika deer in western Japan

The rumen contents of 14 sika deer (Cervus nippon) collected in November 1996 in Yamaguchi Prefecture, the western end of Honshu, Japan, were analyzed by the point-frame method. The contents were composed of high-quality foods like deciduous and evergreen browse and acorns. The composition, which consisted of a significant amount of acorns (27.8 ± 22.5%, mean ± SD), was in contrast to that of northern sika deer populations which exclusively eat graminoid leaves including dwarf bamboos. This is the first record of acorns being a major contributor to diet for wild sika deer. By the point-frame method, acorns were underestimated, and the weight contribution was much greater.     

Food habits of Sika deer on Mt. Goyo,northern Honshu

The food habits of Sika deer (Cervus nippon) on Mt. Goyo, northern Honshu (the main island of Japan), were studied. Among 88 plant species found in surveys, 36 species (40.9%) were eaten by the deer. The percentage frequency of feeding (F) was highest for graminoids (59.6%), followed by browses (16.6%) and ferns (7.7%) and lowest for forbs (5.4%). Though various kinds of plants were eaten, only limited species formed the bulk of the deer dietary composition.Sasa nipponica, in particular, was the most important constituent, ranking highest inF value (80.3%) and being the dominant component of feces. Fecal analyses revealed that, 1) in areas lower than 900 m in altitude,Sasa nipponica accounted for between 20 and 60% of the content and that pasture grasses were also important, and 2)S. nipponica occupied more than 50% in montane areas higher than 900 m, and even more than 80% in winter. The utilization ofS. nipponica as a forage for Sika deer was discussed. This plant can be a key forage species because it meets all the necessary conditions: abundance and stability of supply, palatability, nutritive quality and tolerance to grazing.     

Higher mortality of smaller sika deer fawns

Bodyweight, breast girth and hind-foot length were compared in sika deer fawns (Cervus nippon Temminck) that were shot or had died naturally. The study site was Mount Goyo, in northern Japan. Samples were collected in January and February every year from 1982 to 1991 for the dead fawns and from 1990 to 1992 for the living fawns. The average bodyweight and the variation in bodyweight was significantly smaller in the dead fawns than in the living ones, suggesting a higher mortality rate in smaller fawns. The mean breast girth and hind-foot length were also significantly smaller in the dead fawns. Two possibilities are suggested: (i) the smaller fawns were born later than the larger fawns and grew at normal rates; or (ii) the smaller and larger fawns were born in a similar period but grew at different rates thereafter.