Pastoralism in Northern Peru during Pre-Hispanic Times: Insights from the Mochica Period (100–800 AD) Based on Stable Isotopic Analysis of Domestic Camelids

Llama (Lama glama) and alpaca (Vicugna pacos) are the only large domesticated animals indigenous to the Americas. Pastoralism occupies a fundamental economic, social and religious role in Andean life. Today, camelid livestock are confined to the ecozone of the puna (above 3,500 masl), while their presence on the Pacific coast during pre-Hispanic times is attested by archaeological skeletal remains. This study aims to document herding practices on the northern Peruvian coast during the Early Intermediate Period (200 BC-600 AD) by gaining insights into diet, location of breeding and mobility of archaeological camelids from the funerary and ritual contexts of two Mochica sites, Uhle Platform in Huacas de Moche and El Brujo. The three first early years and the long-term life histories of the animals were documented by the combined bulk analysis of bone collagen (δ¹³C_col and δ¹⁵N_col) and bone structural carbonate (δ¹³C_bone and δ¹⁸O_bone) and the serial analysis of structural carbonate of molar tooth enamel (δ¹³C_enamel and δ¹⁸O_enamel). Mochica camelids were bred in the low and/or middle valleys, unlike their modern counterparts, who are restricted to highland puna C₃ pastures. Archaeological camelids had diverse and complex life histories, usually with substantial maize foddering. An ontogenetic switch in diet and possible residential mobility during the course of life were identified for some specimens. Although the inference of geographic origin from δ¹⁸O_bone and δ¹⁸O_enamel values was limited because of the lack of understanding of the influence of environmental and biological factors, tooth enamel analysis has great potential for exploring camelid herding practices and Andean pastoralism. Our study suggested that Mochica herders adapted their practices to the difficult lowland environment and that herding practices were varied and not restricted to breeding at higher altitudes. The role of maize in different aspects of the economic life of the Mochicas is also underlined.     

Characterization of interleukin-8 receptors in non-human primates

Interleukin-8 is a chemokine with a potent neutrophil chemoatractant activity. In humans, two different cDNAs encoding human IL8 receptors designated IL8RA and IL8RB have been cloned. IL8RA binds IL8, while IL8RB binds IL8 as well as other α-chemokines. Both human IL8Rs are encoded by two genes physically linked on chromosome 2. TheIL8RA andIL8RB genes have open reading frames (ORF) lacking introns. By direct sequencing of the polymerase chain reaction products, we sequenced theIL8R genes of cell lines from four non-human primates: chimpanzee, gorilla, orangutan, and macaca. TheIL8RB encodes an ORF in the four non-human primates, showing 95%–99% similarity to the human IL8RB sequence. TheIL8RA homologue in gorilla and chimpanzee consisted of two ORF 98%–99% identical to the human sequence. The macaca and orangutanIL8RA homologues are pseudogenes: a 2 base pair insertion generated a sequence with several stop codons. In addition, we describe the physical linkage of these genes in the four non-human primates and discuss the evolutionary implications of these findings. The nucleotide sequence data reported in this paper have been submitted to the EMBL/GenBank nucleotide sequence databases and have assigned the accession numbers X91109 (PTIL8RA), X91110 (GGIL8RA), X91111 (PPIL8Ra), X91112 (MMIL8RA), X91113 (PTIL8RB), X9114 (GGIL8RB), X91115 (PPIL8RB), and X91116 (MMIL8RB)     

Some thoughts about neural coding and spike trains

This communication introduces the topic. Foundations: Core concepts: Codings are relations summarized by rules or 'codes'. Special codings are 'neural', 'natural' (in everyday life), 'experimental' (in laboratories), 'conditional' (to partner restrictions). etc. Partial aspects are mechanisms, what partners say about each other, etc. Critical experimental issues: Trains are evaluated by when spikes occur: i.e. as point processes and timings. Trains and point process representations become synonyms. Any code must: (i) be a 'number (rate) code' and an 'interval code'; and (ii) include 'referent, train' covariations involving steady states with overall averages and fluctuations with patterns (dispersions, sequences). Seminal findings. Early data proved trains participated in codings; this is accepted unanimously. Inevitably, though accepted less readily, codings included rates, intervals, averages and patterns. Literature highlights. (1) Confirmed the seminal finding (2.2.) over vast domains; (2) Demonstrated both general and synaptic codings (referents, respectively, sensory, states, etc. and trains in directly connected neurons); (3) Revealed overlap between general and synaptic coding features. Overlap allows train participation in network dynamics; (4) Introduced natural formal contexts. (Point Process Mathematics, Communication. Information and Dynamical Systems Theories); (5) Includes confused opinions: (i) Opposition between rates and intervals; (ii) claims that averages are meaningful but patterns irrelevant. Both, overlooking foundations and evidence, are untenable.     

Locking,intermittency, and bifurcations in a periodically driven pacemaker neuron: Poincaré maps and biological implications

Slowly adapting stretch receptor (SAO) pacemaker neurons, driven with periodic tugs, were analyzed by way of Poincaré mappings (Appendix). Two behaviors were apparent, i) Intermittency characterized previously unclear situations: discharges shifted irregularly between prolonged epochs where spike phases (relative to tugs) and intervals barely changed (slid), and brief bursts with marked variations (skipped), ii) Locking was well-known: phases and intervals remained almost fixed, regardless of the initiation. Changing frequencies, map domains with locking (ordered according to spikes/tugs ratios), alternated with intermittent ones. The best fit for any experimental map was a curve, not straight but certainly unidimensional, continuous and monotonic; it varied characteristically with frequency. This suggested relations called diffeomorphisms, implying periodicity and quasi-periodicity. Outcomes, expanding previous knowledge and meaningful biologically, were i)a precise, exhaustive behavior list (including between behavior transitions) and ii)a thorough understanding or model. This, in turn, provides norms for more specific models (single-variable ones suffice), constraints upon basic mechanisms (one variable, reflecting several real ones combined, should behave as the phase), and forecasts for future experimentation (e.g., unexamined tug frequencies and amplitudes).Supported by funds from CONACYT (PCEXCNA 040539) to ODM and a donation from Trent J. Wells Inc. to JPS     

Consequences of concurrent Ascaridia galli and Escherichia coli infections in chickens

   

Three experiments were carried out to examine the consequences of concurrent infections with Ascaridia galli and Escherichia coli in chickens raised for table egg production. Characteristic pathological lesions including airsacculitis, peritonitis and/or polyserositis were seen in all groups infected with E. coli. Furthermore, a trend for increased mortality rates was observed in groups infected with both organisms which, however, could not be confirmed statistically. The mean worm burden was significantly lower in combined infection groups compared to groups infected only with A. galli. It was also shown that combined infections of E. coli and A. galli had an added significant negative impact on weight gain.     

A potato carboxypeptidase inhibitor gene provides pathogen resistance in transgenic rice

A defensive role against insect attack has been traditionally attributed to plant protease inhibitors. Here, evidence is described of the potential of a plant protease inhibitor, the potato carboxypeptidase inhibitor (PCI), to provide resistance to fungal pathogens when expressed in rice as a heterologous protein. It is shown that rice plants constitutively expressing the pci gene exhibit resistance against the economically important pathogens Magnaporthe oryzae and Fusarium verticillioides . A M. oryzae carboxypeptidase was purified by affinity chromatography and further characterized by mass spectrometry. This fungal carboxypeptidase was found to be a novel carboxypeptidase B which was fully inhibited by PCI. Overall, the results indicate that PCI exerts its antifungal activity through the inhibition of this particular fungal carboxypeptidase B. Although pci confers protection against fungal pathogens in transgenic rice, a significant cost in insect resistance is observed. Thus, the weight gain of larvae of the specialist insect Chilo suppressalis (striped stem borer) and the polyphagous insect Spodoptera littoralis (Egyptian cotton worm) fed on pci rice is significantly larger than that of insects fed on wild-type plants. Homology-based modelling revealed structural similarities between the predicted structure of the M. oryzae carboxypeptidase B and the crystal structure of insect carboxypeptidases, indicating that PCI may function not only as an inhibitor of fungal carboxypeptidases, but also as an inhibitor of insect carboxypeptidases. The potential impact of the pci gene in terms of protection against fungal and insect diseases is discussed.     

Use of oligonucleotide-alkaline phosphatase conjugates as non-radioactive probes for rapid analysis of a proteinase inhibitor gene fromZea mays

Conjugates of oligonucleotides and alkaline phosphatase have been prepared and used as nonradioactive hybridization probes for the study ofPis3 (=MPI) a gene encoding a proteinase inhibitor fromZea mays. Attachment of the alkaline phosphatase was carried out either at the 5′ or 3′ end of two 25-bp oligonucleotides. Sensitivity of each alkaline phosphatase-oligonucleotide probe was assessed using a chemiluminescent substrate for detection of alkaline phosphatase activity. This sensitive method allows the rapid analysis of genomic clones isolated from aZea mays library and the subsequent characterization of the completePis3 gene without the need for construction of restriction maps for the cloned DNA fragments. This general strategy may be valuable for the identification of any gene for which a limited sequence is known and for location of specific DNA sequences that represent a small region within a larger DNA fragment.     

Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans

Background  

Comparative genomic data among organisms allow the reconstruction of their phylogenies and evolutionary time scales. Molecular timings have been recently used to suggest that environmental global change have shaped the evolutionary history of diverse terrestrial organisms. Living xenarthrans (armadillos, anteaters and sloths) constitute an ideal model for studying the influence of past environmental changes on species diversification. Indeed, extant xenarthran species are relicts from an evolutionary radiation enhanced by their isolation in South America during the Tertiary era, a period for which major climate variations and tectonic events are relatively well documented.     

Oscillating chemiluminescence systems: state of the art

Oscillating chemiluminescence (CL) was reported for the first time about 30 years ago. Since then several systems based on addition of a chemiluminescent reagent to a known oscillator system or based on the light emitting features of one component of the oscillating system, have been described. This information, scattered in the scientific literature, is compiled in the present paper. Several oscillating CL systems, including those based on Belousov–Zhabotinskii and Orban oscillators, or horseradish peroxidase‐catalyzed reactions, among others, are critically presented. The application of this type of oscillatory systems is also discussed, in analytical chemistry and for educational purposes. Copyright © 2010 John Wiley & Sons, Ltd.