The Arabidopsis AtNPR1 inversely modulates defense responses against fungal, bacterial, or viral pathogens while conferring hypersensitivity to abiotic stresses in transgenic rice

The nonexpressor of pathogenesis-related (PR) genes (NPR1) protein plays an important role in mediating defense responses activated by pathogens in Arabidopsis. In rice, a disease-resistance pathway similar to the Arabidopsis NPR1-mediated signaling pathway one has been described. Here, we show that constitutive expression of the Arabidopsis NPR1 (AtNPR1) gene in rice confers resistance against fungal and bacterial pathogens. AtNPR1 exerts its protective effects against fungal pathogens by priming the expression of salicylic acid (SA)-responsive endogenous genes, such as the PR1b, TLP (PR5), PR10, and PBZ1. However, expression of AtNPR1 in rice has negative effects on viral infections. The AtNPR1-expressing rice plants showed a higher susceptibility to infection by the Rice yellow mottle virus (RYMV) which correlated well with a misregulation of RYMV-responsive genes, including expression of the SA-regulated RNA-dependent RNA polymerase 1 gene (OsRDR1). Moreover, AtNPR1 negatively regulates the expression of genes playing a role in the plant response to salt and drought stress (rab21, salT, and dip1), which results in a higher sensitivity of AtNPR1 rice to the two types of abiotic stress. These observations suggest that AtNPR1 has both positive and negative regulatory roles in mediating defense responses against biotic and abiotic stresses.     

Phylogenetic diversity of stress signalling pathways in fungi

Background  

Microbes must sense environmental stresses, transduce these signals and mount protective responses to survive in hostile environments. In this study we have tested the hypothesis that fungal stress signalling pathways have evolved rapidly in a niche-specific fashion that is independent of phylogeny. To test this hypothesis we have compared the conservation of stress signalling molecules in diverse fungal species with their stress resistance. These fungi, which include ascomycetes, basidiomycetes and microsporidia, occupy highly divergent niches from saline environments to plant or mammalian hosts.     

Vital role for Plasmodium berghei Kinesin8B in axoneme assembly during male gamete formation and mosquito transmission

Sexual development is an essential phase in the Plasmodium life cycle, where male gametogenesis is an unusual and extraordinarily rapid process. It produces 8 haploid motile microgametes, from a microgametocyte within 15 minutes. Its unique achievement lies in linking the assembly of 8 axonemes in the cytoplasm to the three rounds of intranuclear genome replication, forming motile microgametes, which are expelled in a process called exflagellation. Surprisingly little is known about the actors involved in these processes. We are interested in kinesins, molecular motors that could play potential roles in male gametogenesis. We have undertaken a functional characterization in Plasmodium berghei of kinesin‐8B (PbKIN8B) expressed specifically in male gametocytes and gametes. By generating Pbkin8B‐gfp parasites, we show that PbKIN8B is specifically expressed during male gametogenesis and is associated with the axoneme. We created a ΔPbkin8B knockout cell line and analysed the consequences of the absence of PbKIN8B on male gametogenesis. We show that the ability to produce sexually differentiated gametocytes is not affected in ΔPbkin8B parasites and that the 3 rounds of genome replication occur normally. Nevertheless, the development to free motile microgametes is halted and the life cycle is interrupted in vivo. Ultrastructural analysis revealed that intranuclear mitoses are unaffected whereas cytoplasmic microtubules, although assembled in doublets and elongated, fail to assemble in the normal axonemal ‘9+2' structure and become motile. Absence of a functional axoneme prevented microgamete assembly and release from the microgametocyte, severely reducing infection of the mosquito vector. This is the first functional study of a kinesin involved in male gametogenesis. These results reveal a previously unknown role for PbKIN8B in male gametogenesis, providing new insights into Plasmodium flagellar formation.     

Crayfish stretch-receptor organs: Effects of length-steps with and without perturbations

Isolated slowly and fast adapting stretch receptor organs (SROs) of crayfish were submitted to step-like length changes separated by prolonged stations with constant lengths. At times they were perturbed by a small-amplitude, fast length variation representing natural pertubations and referred to as jitter. Stimulus cycles depended on the sequence of lengths and on whether jitter was present. First-order afferent discharges were recorded from the dorsal nerve. Firing intensity, measured by the rate over bins of about 1 s, was displayed along ongoing time. Quantification involved estimation of cycle histograms, and trend tests for fully adapted discharges and preparation stability. The behaviour perturbed by jitter differed quantitatively in both organs from that without jitter, apart from more intense and irregular firing. Differences were also qualitative in the rapidly adapting organ (RAO), that jitter kept firing almost unccasingly and changed from a transient detector to a tonic receptor. Jitter effects varied with background stretch. The slowly adapting organ (SAO) and the perturbed RAO behaved quite similarly and exhibited features of lead-lag linear systems that implied joint sensitivity to length and velocity, like lively accelerations after stretches and lively slowings after relaxations with subsequent adaptation to steady discharges. Shortenings provided as important stimuli as lengthenings. At constant lengths, discharges eventually reached full adaptation: full adaptation cannot be proven experimentally, but can be accepted in practice using statistically sound and physiologically pragmatic criteria. When fully adapted, the SAO and the perturbed RAO had length-dependent discharges. Both SROs exhibited also prominent non-linear features besides the expected limiter behavior. Responses to symmetric stimuli were asymmetric: e.g. lengthenings produced greater rate changes and more durable transients than shortenings. The coding from steady lengths to fully-adapted discharges was multivalued (except in the unperturbed RAO): discharges were more or less intense depending on whether the particular length had been reached through lengthening or shortening, respectively (hysteresis). The anatomical and physiological reasons for many of these linear or nonlinear features are not yet identified fully. Discharge profiles deviated (in mean squared error) from the corresponding stimuli less with jitter than without. This happened, in spite of increased fluctuations in successive bins, because of reductions in transient effects and in delays to full adaptation. Length identification on the basis of the afferent discharges was improved by jitter, because of the above and because of reduction of the multivaluedness. The consequences of this more faithful representation are contingent on the neuronal analyzer to which the discharges are presented. The issues discussed, like full adaptation, multivaluedness, and the implications of the perturbations are relevant to mechanoreceptors in general, and even to all receptors.The authors acknowledge gratefully the generous support of the Fogarty Center of the National Institutes of Health (USA) and of the Fundación E. Rodríguez Pascual (España). The cooperation of the Instituto de Conservación de la Naturaleza was indispensable     

A model of excitatory synaptic interactions between pacemakers. Its reality,its generality,and the principles involved

This is a model of the steady-state influence of one pacemaker neuron upon another across a synapse with EPSP's. Its postulates require firstly the spontaneous regularity of both cells, whose intervals are E and N, respectively. In addition, they require a special shortening or negative delay of the interspike interval by one or more EPSP's, with a V-shaped dependence of the delay on the position or phase of the EPSP's in the interval; the minimum of the delay function corresponds to the earliest EPSP arrival phase () that triggers a spike immediately. Finally, they impose on the variables certain bounds. The model's behavior has two main features. The first is a zig-zag relationship with an overall increasing trend between the steady-state pre- and post-synaptic discharge intensities (Fig. 7). The zig-zag is formed predominantly, if not exclusively, by segments with positive slopes that are rational fractions. Passage from one such segment to others is negatively-sloped (paradoxical), involving staggered positively-sloped segments whose details are unclear for weak presynaptic discharges and discontinuities for intense discharges. The same postsynaptic intensity may result from several presynaptic ones; the maximum postsynaptic intensity may reflect refractoriness, or the earliest instants of immediate triggering. The second main feature is the locking of the discharges in an invariant forward and backward temporal relation. With at most one EPSP per postsynaptic spike, locking is always present. If the presynaptic interval E is in the closed {rN+,(r+1)N} range, locking is 1:r+1, either stable at a greater-than- phase or unstable at a smaller one; arrivals at integral multiples of N do not affect the postsynaptic intensity. If E is in {rN, rN+} (r>0), locking is at other ratios (e.g., 2:3) and less apparent. With more than one EPSP per spike, when E is below bounds that depend on the interspike interval and the point of earliest triggering, locking happens in the simple s:1 ratio (s=2,3, ...) and is stable; when E is above those bounds, there are E ranges where locking is in other ratios (e.g., 3:2) and ranges where behavior is unclear. The validity of any model is based jointly upon an a priori judgment as to whether postulates depart reasonably little from nature, and upon an a posteriori experimental comparison of modelled and real behaviors. The model's domain of applicability depends on the specific embodiment, each of the latter tolerating characteristically each departure. The present model will be evaluated in the crayfish stretch-receptor neuron (Diez-Martínez et al., in preparation). The model is applicable to any physical system that complies with its postulates, and evidence compatible with this notion is available in many disparate fields. It illustrates the modelling path to a scientific proposition, other paths being inference from experimentation, or deduction from premises acceptable at other approach levels (in this case, for example, from that of synaptic mechanisms). The periodicity postulates set this model within the category of those for oscillators. The notion of an oscillator has a far broader applicability than appears at first sight, since all physically realizable systems have some predominant output frequency, i.e., to a certain extent are oscillators.Supported by funds from the Brain Research Institute, UCLASupported by FAPESP (Sao Paulo, Brazil). Present address: Esc. Politecnica, Dee, University of Sao Paulo, Cid. Univ., CP 8174 Sao Paulo, S.P., Brazil     

Presynaptic irregularity and pacemaker inhibition

It is known (e.g., Perkel et al., 1964) that when a pacemaker neuron elicits IPSP's in another, there are domains called paradoxical segments where in the steady-state i) faster inhibitory discharges determine faster inhibited ones, and ii) pre- and postsynaptic spikes are locked in an invariant forward-and-backward positioning in time, spikes alternating in the ratios 1:1 (1 pere for 1 postsynaptic), 1:2, 2:1..., that are also the slopes of the synaptic rate-transformation. The present project examined the matter further in the inhibitory synapse upon the crayfish tonic stretch receptor neuron, confirming the above. In addition it showed that locking and alternation existed also in the segments interposed between the 1:2, 1:1 and 2:1 paradoxical segments, even though they were not as marked and apparent, and that when tests were close to each other their order became influential and hysteresis-like phenomena appeared. The main finding was that paradoxical rate-relations, locking and alternation persisted when the presynaptic train was irregularized up to interval coefficients of variation of around 0.20 (Figs. 2–5). Therefore, both phenomena may not simply be laboratory curiosities, but also have a role in natural operation where probably a substantial population of neurons exhibits that kind of irregularity. As presynaptic irregularity increased, the paradoxical segment slopes and widths decreased and locking and alternation became less clear-cut. With CV's of about 0.20, only a relatively narrow 1:1 paradoxical segment with about O slope and little locking and alternation remained (Figs. 2b, 3g, 4right, 5third row). With larger CV's, the rate relation decreased monotonically and there was no locking nor alternation (Figs. 2e, 3h, 5bottom row). The postsynaptic discharge was more regular and had fewer changes in the number of presynaptic spikes per post-synaptic interval within paradoxical segments (particularly in their centers) than in segments interposed between them (left vs. right-hand columns in Figs. 5, 6; Fig. 7): the contrast, remarkable for regular stimuli, attenuated as variability increased. The following conclusions are relevant to coding of spike trains across a synapse with IPSP's. i) With fairly regular discharges, the same postsynaptic rate may result from several presynaptic ones (e.g., may result from rates in the 1:1 and 2:1 paradoxical segments and in the interposed one, Fig.2): in some cases but not others, the precise presynaptic rate can be identified on the basis of postsynaptic CV's, interval histograms and cycle slips. ii) A small rate change in a regular presynaptic discharge will have very different postsynaptic consequences depending on where it happens: if across a paradoxical-interposed boundary, for instance, it will cause remarkable rate, pattern and correlation changes. iii) The trans-synaptic mapping of variability involves an increase for the more regular presynaptic discharges and a decrease for the more irregular ones. iv) The postsynaptic discharge was slower with IPSP's than without in most cases; however, when the control discharge was weak or absent, IPSP's accelerated it. Results are relevant also to the operation of periodically performing systems that involve neuronal correlates, indicating that it is necessary in every case to ask whether zigzag relations and locking occur. The delay function plots the arrival time of an IPSP (or IPSP burst) relative to the last postsynaptic spike, i.e., the phase ( in Fig. 1b), against the interval lengthening produced, i.e., the delay (). In all cases, most points clustered around a straight line (Fig. 8), whose slope and ordinate intercept were in the 0.43–0.87 and the 0.02–0.52 ranges, respectively, for single IPSP's. The slope reflects how the IPSP effectiveness depends on when it arrives in the cycle; the intercept reflects the IPSP effectiveness. Large phases often showed aberrant points whose ordinates were either large (and having special formal implications), or very small (perhaps reflecting conduction and synaptic delays), or clustered around a second straight segment with a large negative slope (when spontaneous rates were low) (Fig. 8c). Delay functions for widely separated pairs of IPSP's could be multi-valued, points clustering around 2 or 3 parallel straight lines. A mathematical model of pacemaker inhibitory synaptic interactions (Segundo, 1979) agreed with this embodiment insofar as some postulated properties are concerned (e.g., regular discharge, interval lengthening by IPSP's, linear delay functions with slopes around 0.7) and as to the main aspects of the preparation's behavior (i.e., zigzag rate relations and locking), but not in terms of some aspects of the postulates (e.g., interval variability, rebound) or behavior (e.g., segment boundaries, jitter in the locking, and hysteresis). The model was judged to be on the balance satisfactorily realistic.Supported by funds from the Brain Research Institute, UclaSupported by FAPESP (Sao Paulo, Brazil)     

GMDD: a database of GMO detection methods

Background  

Since more than one hundred events of genetically modified organisms (GMOs) have been developed and approved for commercialization in global area, the GMO analysis methods are essential for the enforcement of GMO labelling regulations. Protein and nucleic acid-based detection techniques have been developed and utilized for GMOs identification and quantification. However, the information for harmonization and standardization of GMO analysis methods at global level is needed.     

Syndromic Management and STI Control in Urban Peru

Background

Syndromic management is an inexpensive and effective method for the treatment of symptomatic sexually transmitted infections (STIs), but its effectiveness as a method of STI control in at-risk populations is questionable. We sought to determine the potential utility of syndromic management as a public health strategy to control STI transmission in high-risk populations in urban Peru.

Methodology

We surveyed 3,285 at-risk men and women from three Peruvian cities from 2003–05. Participants were asked about the presence of genital ulcers, discharge, or dysuria in the preceding six months. Participants reporting symptoms were asked about subsequent health-seeking and partner notification behavior. Urine and vaginal swab samples were tested for Neisseria gonorrhoeae and Chlamydia trachomatis by nucleic acid testing. Serum was tested for syphilis and Herpes Simplex Virus-Type 2 antibodies.

Findings

Recent urogenital discharge or dysuria was reported by 42.1% of participants with gonorrhea or chlamydia versus 28.3% of participants without infection. Genital ulceration was reported by 6.2% of participants with, and 7.4% of participants without, recent syphilis. Many participants reporting symptoms continued sexual activity while symptomatic, and approximately half of all symptomatic participants sought treatment. The positive and negative predictive values of urogenital discharge or genital ulcer disease in detecting STIs that are common in the study population were 14.4% and 81.5% for chlamydia in women and 8.3% and 89.5% for syphilis among gay-identified men.

Conclusions

In our study, STIs among high-risk men and women in urban Peru were frequently asymptomatic and symptomatic participants often remained sexually active without seeking treatment. Additional research is needed to assess the costs and benefits of targeted, laboratory-based STI screening as part of a comprehensive STI control program in developing countries.     

A protein from the mold Aspergillus giganteus is a potent inhibitor of fungal plant pathogens.

A purified preparation of antifungal protein (AFP) from Aspergillus giganteus exhibited potent antifungal activity against the phytopathogenic fungi Magnaporthe grisea and Fusarium moniliforme, as well as the oomycete pathogen Phytophthora infestans. Under conditions of total inhibition of fungal growth, no toxicity of AFP toward rice protoplasts was observed. Additionally, application of AFP on rice plants completely inhibited M. grisea growth. These results are discussed in relation to the potential of the afp gene to enhance crop protection against fungal pathogens in transgenic plants.