Expression, purification, and characterization of human factor XIII in Saccharomyces cerevisiae

Factor XIII is the terminal enzyme of the clotting cascade. A cDNA sequence encoding human placental factor XIII was expressed in Saccharomyces cerevisiae with the yeast ADH2-4c promoter. Expression levels were a strong function of the noncoding flanking DNA content of the construction. When the terminal 3'-flanking noncoding DNA was removed, expression increased approximately 50-fold. The protein was produced in quantity by high-yield fermentation and purified to homogeneity. The recombinant protein was cleaved by thrombin at the same activation site as purified human placental FXIII and exhibited 100% enzymatic activity. At high thrombin concentrations rFXIIIa was cleaved into inactive 54- and 25-kDa polypeptides. The identity of these cleavage sites and the blocked N-terminus to that of the human protein was revealed by amino acid microsequencing. A time course of thrombin activation was performed and the relative distribution of the thrombin-cleaved subunits to the uncleaved zymogen subunits determined; the results were consistent with the half of the sites catalytic model for transglutaminase activity proposed by Chung et al. (Chung, S. I., Lewis, M. S., & Folk, J. E. (1974) J. Biol. Chem. 249, 940-950, 1974) and Hornyak et al. (Hornyak, T. J., Bishop, P. D., & Shafer, J. A. (1989) Biochemistry 28, 7326-7332). Equilibrium and velocity sedimentation analysis indicated that rFXIII exists as a 166-kDa nondissociating dimer that behaves as a compact particle of 8.02 S. Thus, all of the properties of rFXIII thus far examined are consistent with those reported for human platelet and placental FXIII.(ABSTRACT TRUNCATED AT 250 WORDS)     

Scanning electron microscopy of surface ultrastructure changes during meiosporangium maturation and meiospore liberation in the aquatic fungus Allomycpes arbuscula.

Alterations in wall ultrastructure accompanying resistant sporangium maturation and meiospore liberation in Allomyces arbuscula were examined by scanning electron microscopy. Three discrete wall layers were identified, each of which underwent marked changes during processes leading to zoospore release. The outermost wall layer, the hyphal sheath continuous with the hypha, was physically altered during the maturation process preparatory to induction and release of meiospores. The integrity of this wall layer was broken, and it was no longer closely juxtaposed to the heavy pitted wall layer that lay beneath it. A fibrillar matrix seemed to cement the two layers to one another before this desiccation. A single, raised, longitudinal dehiscence ridge on each meiosporangium appeared to be a structurally differentiated region of the pitted wall layer at which sporangium rupture occurred to permit emergence of the protoplast. By its thickness the pitted wall layer was likely to provide mechanical rigidity to the meiosporangium. Beneath the pitted wall layer, another thin, flexible wall layer surrounded the protoplast. From this structure, a single exit papilla was cleaved at the apical region to effect the release of meiospores from the protruding protoplast. Thus a sequence of structural changes in well-differentiated multiple wall layers is implicated in the sporulation process in this organism.     

Can Zipf's law be adapted to normalize microarrays?

Background  

Normalization is the process of removing non-biological sources of variation between array experiments. Recent investigations of data in gene expression databases for varying organisms and tissues have shown that the majority of expressed genes exhibit a power-law distribution with an exponent close to -1 (i.e. obey Zipf's law). Based on the observation that our single channel and two channel microarray data sets also followed a power-law distribution, we were motivated to develop a normalization method based on this law, and examine how it compares with existing published techniques. A computationally simple and intuitively appealing technique based on this observation is presented.     

The heme-binding lipoprotein (HbpA) of Haemophilus influenzae: role in heme utilization

Haemophilus influenzae has an absolute growth requirement for heme and a heme binding lipoprotein (HbpA) has been implicated in the utilization of this essential nutrient. HbpA was identified by examining clones from an H. influenzae genomic library that caused Escherichia coli harboring the clone to bind heme. However, HbpA has not been shown to mediate heme acquisition in H. influenzae. We constructed an insertional mutation of hbpA in a nontypeable H. influenzae strain and demonstrated a role for the gene in utilization of multiple heme sources. This is the first report confirming a role for HbpA in utilization of heme.     

Vigor in an interspecific hybrid of sansevieria

F₁ hybrids of S. trifasciata x S. deserti were distinctly superior to either parent species in terms of total green yield, percent fiber leaves, fiber leaf yield and fiber yield in tests conducted on Everglades peat and Immokalee fine sand in south Florida. Apparently the hybrid vigor in the F₁’s can be accounted for by a combination of favorable growth factors from the 2 diverse parent species. Generally the fiber quality of the hybrids was equal to or better than the parents.