Is torso soft tissue motion really an artefact within breast biomechanics research?

For rigid body POSE estimation, any relative movement of the tracking markers on a segment is often referred to as an artefact; however this may be an important part of the signal within breast biomechanics. This study aimed to quantify differences in breast range of motion when calculated relative to the torso segment using either direct or segment optimised POSE estimation algorithms. Markers on the torso and right nipple were tracked using infrared cameras (200 Hz) during five running gait cycles in three breast support conditions (no bra, everyday bra and sports bra). Multiplanar breast range of motion was calculated relative to the torso segment using two POSE estimation algorithms. First, the torso segment was defined using direct POSE estimation (direct). Second, while standing stationary in the anatomical position; the positional data of the torso markers were used to construct the torso using segment optimised POSE estimation (optimised). The torso segment length defined using direct POSE estimation changed significantly by 3.4 cm compared to that of the segment optimisation POSE estimation in the no bra condition. Subsequently, superioinferior breast range of motion was significantly greater (p<0.017) when calculated using direct POSE estimation, within each of the three breast support conditions. Segment optimisation POSE estimation is recommended to minimise any differences in breast motion associated with intra segment deformation between physical activity types. However, either algorithm is recommended when evaluating different breast support garments, as a correctly fitted bra does not cause the torso markers to move relative to each other.     

MetaTM - a consensus method for transmembrane protein topology prediction

Background  

Transmembrane (TM) proteins are proteins that span a biological membrane one or more times. As their 3-D structures are hard to determine, experiments focus on identifying their topology (i. e. which parts of the amino acid sequence are buried in the membrane and which are located on either side of the membrane), but only a few topologies are known. Consequently, various computational TM topology predictors have been developed, but their accuracies are far from perfect. The prediction quality can be improved by applying a consensus approach, which combines results of several predictors to yield a more reliable result.     

An assessment of the reliability and standardisation of tests used to elicit reference muscular actions for electromyographical normalisation

Prior to implementing a normalisation method, the standardisation and reliability of the method needs to be examined. This investigation aimed to assess the reliability of EMG amplitudes and test outputs from proposed normalisation methods for the triceps surae. Sixteen participants completed isometric (maximum and sub-maximum); isokinetic (1.05 rad/s, 1.31 rad/s and 1.83 rad/s) squat jump and 20 m sprint conditions, on 3 separate occasions over 1 week. The EMG data was collected from the medial and lateral gastrocnemius (MG and LG) and soleus (SOL). Log transformed typical error measurements (TEM_CV%) assessed EMG signal and test output reliability across the three sessions. Only the squat jump provided acceptable EMG reliability for all muscles both between days (SOL: 13%; MG: 14.5%; LG: 11.8%) and between weeks (SOL: 14.5%; MG: 12.9%; LG: 8.9%), with the sprint only showing poor reliability in the LG between days (16.3%). Acceptable reliability for the isometric and isokinetic conditions were muscle and re-test period dependant. Reliable output was found for the squat jump (4.1% and 3.6%), sprint (0.8% and 0.6%) and 1RM plantar flexion test (2.8% and 3.5%) between days and weeks, respectively. Isokinetic plantar flexion displayed poor reliability at all velocities between days and weeks. It was concluded that the squat jump provides a standardised and reproducible reference EMG value for the triceps surae for use as a normalisation method.     

Cloning and characterization of 29 tetranucleotide and two dinucleotide polymorphic microsatellite loci from the endangered marbled murrelet (Brachyramphus marmoratus)

We developed 31 novel, polymorphic microsatellite loci in the marbled murrelet (Brachyramphus marmoratus), a critically endangered seabird. Variability was tested on 15 individuals from the Santa Cruz, California population, with each locus characterized by two to 12 alleles. Observed levels of heterozygosity ranged from 0.13 to 0.93. These loci provide a valuable means of assessing the population structure and demographic parameters of this species, which may be critical to its conservation across a fragmented habitat.