Molecular modelling study of 2-phenylethynyladenosine (PEAdo) derivatives as highly selective A3 adenosine receptor ligands

A series of 2-phenylethynyladenosine (PEAdo) derivatives substituted in the N⁶- and 4′-position was synthesised and the new derivatives were tested at the four human adenosine receptors stably transfected into Chinese hamster ovary (CHO) cells, using radioligand binding studies (A₁, A_2A, A₃) or adenylyl cyclase activity assay (A_2B). Binding studies showed that the presence of a phenyl ethynyl group in the 2 position of adenosine favoured the interaction with A₃ receptors, resulting in compounds endowed with high affinity and selectivity for the A₃ subtype. Additional substitution of the N⁶- and 4′-position increases both A₃ affinity and selectivity. The results showed that the new compounds have a good affinity for the A₃ receptor and in particular, the N⁶-methoxy-2-phenylethynyl-5′-N-methylcarboxamidoadenosine, with a K_i at A₃ of 1.9 nM and a selectivity A₁/A₃ and A_2A/A₃ of 4,800- and 8,600-fold, respectively. Therefore, it is one of the most potent and selective agonists at the human A₃ adenosine receptor subtype reported so far. Furthermore, functional assays of inhibition of 10 μM forskolin-stimulated cAMP production via the adenosine A₃ receptor revealed that the new trisubstituted adenosine derivatives behave as full agonist of this receptor subtype. Docking analysis of these compounds was performed at a homology model of the human A₃ receptor based on the bovine rhodopsin crystal structure as template, and the results are in accordance with the biological data.An erratum to this article can be found at     

Monitoring DNA Contamination in Handled vs. Directly Excavated Ancient Human Skeletal Remains

Bones, teeth and hair are often the only physical evidence of human or animal presence at an archaeological site; they are also the most widely used sources of samples for ancient DNA (aDNA) analysis. Unfortunately, the DNA extracted from ancient samples, already scarce and highly degraded, is widely susceptible to exogenous contaminations that can affect the reliability of aDNA studies. We evaluated the molecular effects of sample handling on five human skeletons freshly excavated from a cemetery dated between the 11 to the 14^th century. We collected specimens from several skeletal areas (teeth, ribs, femurs and ulnas) from each individual burial. We then divided the samples into two different sets: one labeled as “virgin samples” (i.e. samples that were taken by archaeologists under contamination-controlled conditions and then immediately sent to the laboratory for genetic analyses), and the second called “lab samples”(i.e. samples that were handled without any particular precautions and subject to normal washing, handling and measuring procedures in the osteological lab). Our results show that genetic profiles from “lab samples” are incomplete or ambiguous in the different skeletal areas while a different outcome is observed in the “virgin samples” set. Generally, all specimens from different skeletal areas in the exception of teeth present incongruent results between “lab” and “virgin” samples. Therefore teeth are less prone to contamination than the other skeletal areas we analyzed and may be considered a material of choice for classical aDNA studies. In addition, we showed that bones can also be a good candidate for human aDNA analysis if they come directly from the excavation site and are accompanied by a clear taphonomic history.     

Molecular detection assay of the bud mite Trisetacus juniperinus on Cupressus sempervirens in nurseries of central Italy

Trisetacus juniperinus (Nalepa) sensu Keifer (Acari: Eriophyoidea: Phytoptidae) causes irregular development of buds, shoot deformations and stunted growth of trees, resulting in a serious threat to nurseries and young stands of Cupressus sempervirens L. (Mediterranean cypress). Recently, some cypress clones selected for their resistance to the fungal canker agent Seiridium cardinale (Wag.) have shown high susceptibility to the mite. Considering its tiny body, its hidden lifestyle inside the buds and the probable occurrence of other species (the vagrant Epitrimerus cupressi (Keifer) is common on the Mediterranean cypress in Italy), detection and monitoring of T. juniperinus require taxonomic expertise and are often time-consuming and challenging before serious damage is discernible. In the present study, a rapid, cost-effective PCR-based method was developed and validated to detect T. juniperinus on cypresses. The cytochrome c oxidase subunit I gene was amplified with degenerate and specific primers, but the latter were the only ones able to discriminate between T. juniperinus and E. cupressi. PCR products distinguished the two species both in a pool of individuals in a mixed population of both species and in single individuals, indicating the sensitivity of the detection method. PCR–RFLP (restriction fragment length polymorphism) by means of XmnI and XbaI endonucleases separated the two species. Furthermore, a washing-sieving protocol was used to make mite collection from the tree sample faster and simpler; this procedure did not interfere with the molecular detection of the species. The possibility of the routine use of this assay to monitor quarantine eriophyoids infesting plant material is discussed.     

Bioactive Secondary Metabolites from Schizogyne sericea (Asteraceae) Endemic to Canary Islands

Schizogyne sericea (Asteraceae) is a halophytic shrub endemic to the Canary Islands and traditionally employed as analgesic, astringent, anti‐inflammatory, and vulnerary. A comprehensive phytochemical investigation was conducted on the flowering aerial parts by analyzing both essential oil constituents and polar compounds. The essential oil was dominated by p‐cymene, with the noteworthy occurrence of β‐pinene and thymol esters. From the EtOH extract, eight compounds were isolated and structurally elucidated. Essential oil, polar fractions, and isolates ( 2 ), ( 4 ), and ( 5 ) were separately in vitro assayed for antiproliferative activity on human tumor cell lines (A375, MDA‐MB 231, and HCT116) by MTT assay, for antioxidant potential by DPPH, ABTS, and FRAP assays, and for antimicrobial activity by the agar disk diffusion method. Results revealed that essential oil and compounds 1 and 2 exert a strong inhibition on tumor cells, and in some cases, higher than that of cisplatin. Fractions containing thymol derivatives ( 1 and 2 ) and caffeoylquinic acid derivatives 4 and 5 displayed antioxidant activity comparable to that of Trolox, making S. sericea extract an interesting natural product with potential applications as preservative or in the treatment of diseases in which oxidative stress plays an important role.     

Toxicity of some insecticides to <Emphasis Type="Italic">Tetranychus urticae</Emphasis>, <Emphasis Type="Italic">Neoseiulus californicus</Emphasis> and <Emphasis Type="Italic">Tydeus californicus</Emphasis>

Three mite species are frequently found on vegetable crops in Italy: the pest Tetranychus urticae Koch (Acari: Tetranychidae), the predator Neoseiulus californicus (McGregor) (Acari: Phytoseiidae) and the unspecialised feeder Tydeus californicus (Banks) (Acari: Tydeidae). In laboratory trials, the direct and residual effects of six insecticides recommended for the control of aphids, whiteflies and thrips in vegetable crops, (Biopiren® plus (pyrethrins), Confidor® (imidacloprid), Oikos® (azadirachtin), Plenum® (pymetrozine), Naturalis® (Beauveria bassiana) and Rotena® (rotenone)), were evaluated for the three mite species. All the products affected the mites and their effect was often favourable towards T. urticae and unfavourable towards N. californicus and T. californicus. Rotenone was more toxic to eggs than females of T. urticae. It was highly toxic to N. californicus and caused the death of all treated females of T. californicus. Pyrethrins and imidacloprid increased T. urticae fecundity, but decreased fecundity of N. californicus. Imidacloprid decreased T. californicus fecundity more than pyrethrins. Beauveria bassiana was not toxic to T. urticae and T. californicus, but induced high mortality in the progeny of treated females of N. californicus. Azadirachtin and pymetrozine were the least toxic to T. urticae and N. californicus, but decreased production of larvae in T. californicus. Implications for integrated pest management on vegetables are discussed.     

Chemical Composition and in vitro Biological Activities of the Essential Oil of Vepris macrophylla (Baker) I.Verd. Endemic to Madagascar

Vepris macrophylla is an evergreen tree occurring in sub‐humid forest of Madagascar and traditionally used in the Island to treat several complaints as well as to prepare aromatic teas and alcoholic drinks. In the present work, the essential oil distilled from the leaves was analyzed for the first time by gas chromatography (GC‐FID) and gas chromatography/mass spectrometry (GC/MS). The major compounds were citral (56.3%), i.e., mixture of neral (23.1%) and geranial (33.2%), citronellol (14.5%), and myrcene (8.3%). The essential oil exhibited antimicrobial activity against S. aureus, P. aeruginosa, and C. albicans as determined by vapor‐diffusion assay, supporting the traditional use of the plant for preparing steam bath for the treatment of infectious diseases. The essential oil was evaluated for cytotoxic activity on human tumor cell lines by MTT (=3‐(4,5‐dimethylthiazol‐2‐yl)‐2,5‐diphenyl‐2H‐tetrazolium bromide) assay, showing inhibitory effects comparable to those of cisplatin, notably on MDA‐MB 231 (human breast adenocarcinoma) and HCT116 (human colon carcinoma) cell lines. Finally, the essential oil was also subjected to screening for its antioxidant activity and the free radical scavenging capacity.     

Design and implementation of three incoherent feed-forward motif based biological concentration sensors

Synthetic biology is a useful tool to investigate the dynamics of small biological networks and to assess our capacity to predict their behavior from computational models. In this work we report the construction of three different synthetic networks in Escherichia coli based upon the incoherent feed-forward loop architecture. The steady state behavior of the networks was investigated experimentally and computationally under different mutational regimes in a population based assay. Our data shows that the three incoherent feed-forward networks, using three different macromolecular inhibitory elements, reproduce the behavior predicted from our computational model. We also demonstrate that specific biological motifs can be designed to generate similar behavior using different components. In addition we show how it is possible to tune the behavior of the networks in a predicable manner by applying suitable mutations to the inhibitory elements. Brian Aufderheide provided material support.     

Effect of long-term feeding history on functional and numerical response of Neoseiulus californicus (Acari: Phytoseiidae)

The functional and numerical responses of the predatory mite Neoseiulus californicus to eggs and protonymphs of Tetranychus urticae were studied on excised strawberry leaflet discs under laboratory conditions (25 ± 1°C, 75–85% RH and 16L : 8D). Four strains of the phytoseiid were compared: three originated from a long-term mass-rearing with different food (T. urticae, Dermatophagoides farinae and Quercus spp. pollen) and under controlled conditions, while the fourth was directly collected from a natural environment and therefore considered a wild strain. The different nutritional histories affected the responses of N. californicus on tetranychids. On the whole, the wild strain gave better performance. When egg prey was administered this strain and the one mass-reared on two-spotted spider mites showed similar functional as well as numerical responses; on the contrary, when protonymphs were furnished, the wild strain did not differ from that mass-reared on pollen. The strain previously fed on house dust mites gave the worst performance and also showed the lowest percentages of females in the progeny. The functional responses obtained were predominantly type II curves. In all cases considered, no stored energy was allocated for reproduction and, with the exception of the wild strain on eggs, the prey was exploited less efficiently as the consumption increased. In spite of the differences evidenced in this experiment all strains were characterized by high predation and oviposition rates. Thus the results obtained suggest no drawbacks in the use of mass-reared N. californicus as biocontrol agents. © Rapid Science Ltd. 1998     

Essential‐Oil Polymorphism in the ‘Resurrection Plant’ Myrothamnus moschatus and Associated Ethnobotanical Knowledge

Gas chromatography/mass spectroscopy analysis (GC/MS) of essential oils obtained from populations of the resurrection plant Myrothamnus moschatus, growing in different areas of Madagascar, allowed identification of three main chemotypes in the species. The first one was provided by plants with a high content of trans‐pinocarveol and pinocarvone; the second one involved plants with high percentages of limonene, cis‐ and trans‐p‐mentha‐1(7),8‐dien‐2‐ol, and β‐selinene; and the third chemotype was characterized by plants with high levels of oxygenated sesquiterpenes such as caryophyllene oxide and α‐ and β‐isomers of caryophylla‐4(12),8(13)‐dien‐5‐ol. Chemical data were supported by chemometric technique as the principal component analysis. Furthermore, the relationship between the dioecy and phytochemistry within one population was also considered. Finally, correlations between chemical variations and ethnobotanical data were assessed.