Spacer-based selectivity in the binding of "two-prong" ligands to recombinant human carbonic anhydrase I

Benzenesulfonamide and iminodiacetate (IDA)-conjugated Cu(2+) independently interact at the active site and a peripheral site of carbonic anhydrases, respectively [Banerjee, A. L., Swanson, M., Roy, B. C., Jia, X., Haldar, M. K., Mallik, S., and Srivastava, D. K. (2004) J. Am. Chem. Soc. 126, 10875-10883]. By attaching IDA-bound Cu(2+) to benzenesulfonamide via different chain length spacers, we synthesized two "two-prong" ligands, L1 and L2, in which the distances between Cu(2+) and NH(2) group of sulfonamide were 29 and 22 A, respectively. We compared the binding affinities of L1 and L2, vis-a-vis their parent compound, benzenesulfonamide, for recombinant human carbonic anhydrase I (hCA-I) by performing the fluorescence titration and steady-state kinetic experiments. The experimental data revealed that whereas the binding affinity of L1 for hCA-I was similar to that of benzenesulfonamide, the binding affinity of L2 was approximately 2 orders of magnitude higher, making L2 one of the most potent ligands or inhibitors of hCA-I. Since the enhanced binding or inhibitory potency of L2 is diminished (to the level of benzenesulfonamide) either in the presence of EDTA or upon treatment of the enzyme with diethyl pyrocarbonate, it is proposed that Cu(2+) of L2 interacts with one of the surface-exposed histidine residues of the enzyme. A cumulative account of the experimental data leads to the suggestion that the differential binding of L1 versus L2 to hCA-I is encoded in the chain length of the spacer moiety.     

Indirect effects of black spruce (Picea mariana) cover on community structure and function in sheep laurel (Kalmia angustifolia) dominated heath of eastern Canada

Recent studies on phenotypic plasticity of plant traits indicate that within-species variation in litter quality may be a significant factor that feeds back on litter decomposition and nutrient cycling rates at the stand level. These findings may be especially significant for understanding biodiversity-stability relationships in species-poor ecosystems that have little functional redundancy among primary producers. We tested the null hypothesis that black spruce and Kalmia were functional equivalents with respect to their structuring roles of subordinate vegetation and their influence on site biogeochemistry. The purpose of the study was to determine the degree to which forest cover exerts top-down control on community structure and function of Kalmia-black spruce communities. This community type dominates much of the forest understory and unforested heathlands in Atlantic Canada. We intensively studied a representative stand of Kalmia heath in Terra Nova National Park in eastern Newfoundland. Thirty-two 0.5 m × 0.5 m sample plots were randomly distributed among five transects bisecting gradients in dominance of black spruce and Kalmia. Light levels, species composition, vascular plant cover and soil respiration rate were determined for each plot. Tissue samples of litter, mature and current year leaves of Kalmia were collected and analyzed for nutrient status. Herbaceous species richness and cover peaked at intermediate light levels. Kalmia foliar N concentration and above-ground biomass increased with increasing shade. Soil respiration rates were strongly related to the light gradient and increased with increasing quality of Kalmia litter inputs. Our data indicate that Kalmias vigour and foliar nitrogen concentrations are greater under black spruce canopy as opposed to heath condition and that the shaded phenotype has relatively benign feedbacks on soil productivity compared to the open-habitat phenotype. In the absence of functional diversity at the species level in these species-poor habitats, phenotypic plasticity in Kalmia appears to be an important dimension of the biodiversity-stability relationship in these communities since our data suggest that this species has the potential either to inhibit or facilitate carbon cycling and the pathway is strongly linked to the presence or absence of overstory cover. The role of forest regeneration as an indirect control of forest soil processes such as carbon and nitrogen cycling in this ecosystem is discussed.     

Fine needle aspiration cytology diagnosis of a cutaneous granular cell tumor in a 7-year-old child. A case report

BACKGROUND: Granular cell tumors are neoplasms of uncertain histogenesis, although a neural origin is favored. Most reports on the cytologic features of granular cell tumors have been on lesions from the breast or respiratory tract. However, there are only a few reports on fine needle aspiration (FNA) cytologic diagnosis of cutaneous or soft tissue granular cell tumors. CASE: A 7-year-old girl presented with a skin lesion on her right forearm of one year's duration. The FNA smears showed sheets and clusters of oval to polygonal cells with an abundant amount of granular cytoplasm. Many single, scattered cells with similar morphology were seen in the background. Immunostaining for S-100 protein showed granular cytoplasmic positivity. The tumor was diagnosed as a benign granular cell tumor. The histopathology report on the excised lesion confirmed the FNA diagnosis. CONCLUSION: The cytopathologic features of granular cell tumors presenting as skin lesions are distinctive enough to allow a correct diagnosis on FNA cytology.     

Topology and Oligomerization of Mono- and Oligomeric Proteins Regulate Their Half-Lives in the Cell

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Structural Characterization of Carbohydrate Binding by LMAN1 Protein Provides New Insight into the Endoplasmic Reticulum Export of Factors V (FV) and VIII (FVIII)

LMAN1 (ERGIC-53) is a key mammalian cargo receptor responsible for the export of a subset of glycoproteins from the endoplasmic reticulum. Together with its soluble coreceptor MCFD2, LMAN1 transports coagulation factors V (FV) and VIII (FVIII). Mutations in LMAN1 or MCFD2 cause the genetic bleeding disorder combined deficiency of FV and FVIII (F5F8D). The LMAN1 carbohydrate recognition domain (CRD) binds to both glycoprotein cargo and MCFD2 in a Ca²⁺-dependent manner. To understand the biochemical basis and regulation of LMAN1 binding to glycoprotein cargo, we solved crystal structures of the LMAN1-CRD bound to Man-α-1,2-Man, the terminal carbohydrate moiety of high mannose glycans. Our structural data, combined with mutagenesis and in vitro binding assays, define the central mannose-binding site on LMAN1 and pinpoint histidine 178 and glycines 251/252 as critical residues for FV/FVIII binding. We also show that mannobiose binding is relatively independent of pH in the range relevant for endoplasmic reticulum-to-Golgi traffic, but is sensitive to lowered Ca²⁺ concentrations. The distinct LMAN1/MCFD2 interaction is maintained at these lowered Ca²⁺ concentrations. Our results suggest that compartmental changes in Ca²⁺ concentration regulate glycoprotein cargo binding and release from the LMAN1·MCFD2 complex in the early secretory pathway.     

Induction of systemic resistance in rice by leaf extracts of Datura metel against sheath blight disease

The leaf extracts of Datura metel [both aqueous leaf extract (ALE) and ethanolic leaf extract (ELE)] were observed here to find if they can induce systemic resistance in the rice commonly found in Eastern India. The results showed that after the treatment, the enzyme activities of all the defence-related enzymes increased to a certain level even without pathogenic infection in comparison with non-treated seedlings and then, maintain at constant level throughout the study period. When treated seedlings were infected with Rhizoctonia solani, the enzyme activities were increased more than in uninfected seedlings. The elevated enzyme activities gave the indication of an induced systemic resistance in rice. The ELE of D. metel showed better induction effect than ALE.     

Predicting Plant Diversity Response to Disturbance: Applicability of the Intermediate Disturbance Hypothesis and Mass Ratio Hypothesis

Predicting the relationships between disturbance, biodiversity and productivity of ecosystems continue to preoccupy ecologists and resource managers. Two hypotheses underpin many of the discussions. The Intermediate Disturbance Hypothesis (IDH), which proposes that biodiversity peaks at intermediate levels of disturbance, is often extended to predict that productivity follows the same response pattern. The Mass Ratio Hypothesis (MRH) proposes that the biological traits of the dominant species are the critical drivers of ecosystem function (e.g., productivity) and that these species increase in biomass rapidly after disturbance then stabilize. As a consequence, species diversity first peaks then declines after disturbance as a few species dominate the site. Both provide a conceptual link among disturbance, species diversity and productivity (an index of ecosystem function). We assessed the current state of empirical support for these two hypotheses with a literature survey and determined if their conformance is related to ecosystem type or site productivity. Conformance of IDH reported in past reviews (considering all ecosystems) ranged from 16 to 21%. This contrasts with our finding that in terrestrial ecosystems conformance to IDH was 46% (22 of 48 studies), 17% studies reported non-compliance, and 23% reported inconclusive results. Most studies explained their results with respect to IDH or MRH. Only two studies were specifically designed to test the validity of IDH or MRH. We conclude that (i) the IDH is mostly applicable to predict species diversity response to disturbance in upland sites of medium to high productivity and the MRH is applicable to organic sites of low productivity; (ii) there is a critical need for more studies specifically designed to test these hypotheses in natural ecosystems using common protocols; and (iii) enhanced understanding of these models will add value in refining management policies and in the selection of meaningful diversity indicators of sustainability.     

Tagging SNPs in the kallikrein genes 3 and 2 on 19q13 and their associations with prostate cancer in men of European origin

Two of the classical kallikrein genes KLK3 and KLK2 on 19q13.4 are plausible candidates in prostate cancer susceptibility. They are expressed almost exclusively in prostate tissue. We have performed a comprehensive analysis of association of variants in these two genes with prostate cancer among men of European descent using a tagging SNP approach. Thirteen SNPs selected from the HapMap database were analyzed in a sample of 596 histologically verified prostate cancer cases and 567 ethnically matched controls. Five SNPs showed significant association at single marker level. Linkage disequilibrium (LD) analysis revealed four LD blocks. We performed a haplotype analysis within each LD block. A major haplotype in block 1 that contains the first two significantly associated SNPs was significantly underrepresented in the prostate cancer cases; a second haplotype in block 3 also showed significant frequency differences between cases and controls. Four of the studied SNPs show positive associations with serum PSA levels. A structure analysis revealed no population stratification in our samples that could have confounded the association results. These findings suggest a plausible role of kallikrein gene variants in the etiology of prostate cancer among men of European ancestry.