Relative Abundances of Proteobacterial Membrane-Bound and Periplasmic Nitrate Reductases in Selected Environments

Dissimilatory nitrate reduction is catalyzed by a membrane-bound and a periplasmic nitrate reductase. We set up a real-time PCR assay to quantify these two enzymes, using the narG and napA genes, encoding the catalytic subunits of the two types of nitrate reductases, as molecular markers. The narG and napA gene copy numbers in DNA extracted from 18 different environments showed high variations, with most numbers ranging from 2 × 10² to 6.8 × 10⁴ copies per ng of DNA. This study provides evidence that, in soil samples, the number of proteobacteria carrying the napA gene is often as high as that of proteobacteria carrying the narG gene. The high correlation observed between narG and napA gene copy numbers in soils suggests that the ecological roles of the corresponding enzymes might be linked.     

Spatio-Temporal Variations in Malaria Incidence in Children Less than 10 Years Old,Health District of Sokone,Senegal, 2010–2013

Introduction

Malaria is a leading cause of morbidity and mortality in sub-Saharan Africa. Detailed characterization of the risks for malaria, among populations living in areas where the disease is endemic, is an important priority, especially for planning and evaluating future malaria-control tools. A prospective cohort study was implemented in children under ten years living in rural areas with high Plasmodium falciparum transmission in Senegal.

Methods

Malaria incidence was prospectively evaluated over three year follow-up among a cohort of children aged less than 10 years old living in eight villages of the Sokone health district. The parents of 1316 children comprising a passive case detection cohort were encouraged to seek care from the study health centers at any time their child felt sick. In the event of reported history of fever within 24 hours or measured axillary temperature ≥ 37.5°C, a Rapid Diagnostic Test (RDT) was performed.

Results

From November 2010 to October 2013, among the 1468 reported febrile episodes, 264 were confirmed malaria episodes. Over the 3 years, 218 (16.9%) children experienced at least one clinical malaria episode. Cumulative malaria incidence was 7.3 episodes per 100 children-year at risk, with remarkably heterogeneous rates from 2.5 to 10.5 episodes per 100 children-year at risk. Clinical malaria prevalence ranged from 11.5 to 28.4% in the high transmission season versus from 9.6 to 21.2% in the low transmission season.

Conclusion

This longitudinal community-based study shows that occurrence of clinical malaria was not evenly distributed among all the cohort children in the eight villages. It demonstrates the complexity of spatial distribution of malaria incidence at a local level, even in a region of vegetation and altitudinal homogeneity.     

Dried Blood Spots for Viral Load Monitoring in Malawi: Feasible and Effective

Objectives

To evaluate the feasibility and effectiveness of dried blood spots (DBS) use for viral load (VL) monitoring, describing patient outcomes and programmatic challenges that are relevant for DBS implementation in sub-Saharan Africa.

Methods

We recruited adult antiretroviral therapy (ART) patients from five district hospitals in Malawi. Eligibility reflected anticipated Ministry of Health VL monitoring criteria. Testing was conducted at a central laboratory. Virological failure was defined as >5000 copies/ml. Primary outcomes were program feasibility (timely result availability and patient receipt) and effectiveness (second-line therapy initiation).

Results

We enrolled 1,498 participants; 5.9% were failing at baseline. Median time from enrollment to receipt of results was 42 days; 79.6% of participants received results within 3 months. Among participants with confirmed elevated VL, 92.6% initiated second-line therapy; 90.7% were switched within 365 days of VL testing. Nearly one-third (30.8%) of participants with elevated baseline VL had suppressed (<5,000 copies/ml) on confirmatory testing. Median period between enrollment and specimen testing was 23 days. Adjusting for relevant covariates, participants on ART >4 years were more likely to be failing than participants on therapy 1–4 years (RR 1.7, 95% CI 1.0-2.8); older participants were less likely to be failing (RR 0.95, 95% CI 0.92-0.98). There was no difference in likelihood of failure based on clinical symptoms (RR 1.17, 95% CI 0.65-2.11).

Conclusions

DBS for VL monitoring is feasible and effective in real-world clinical settings. Centralized DBS testing may increase access to VL monitoring in remote settings. Programmatic outcomes are encouraging, especially proportion of eligible participants switched to second-line therapy.     

Influence of soil fertility on the rhizobial competitiveness for nodulation of <Emphasis Type="Italic">Acacia senegal</Emphasis> and <Emphasis Type="Italic">Acacia nilotica</Emphasis> provenances in nursery and field conditions

Within the framework of our study, we assessed the nodule occupancy of a mixture of various strains of rhizobia to inoculate several provenances of Acacia senegal and Acacia nilotica. The first part of the experiment was carried out under greenhouse conditions where the plants were cultivated in polyvinyl chloride tubes containing an unsterilized Sangalkam soil low in organic matter and nitrogen. The results showed that 4 and 8 months after sowing, rhizobial strains CIRADF 306 and CIRADF 300 were mainly present in nodules of A. nilotica and A. senegal, respectively. After transferring the seedlings to the more fertile soil in Bel Air field station, the molecular analysis of the nodules showed that strain CIRADF 306 was absent from the nodules of A. nilotica, whereas strain CIRADF 305 which occurred only at low nodule occupancy in the nursery, predominated in the field conditions. On the other hand, strain CIRADF 300 occurred in the majority of the nodules from the various provenances of A. senegal. These results demonstrated actual interaction between inoculated rhizobial strains, soil type and host plant genotype in terms of competitiveness, nodulation and symbiotic nitrogen fixation.     

Development and characterization of biofilms on stainless steel and titanium in spent nuclear fuel pools

The aim of the present research was to study the biofilms developed in a Spanish nuclear power plant and their ability to entrap radionuclides. In order to carry this out, a bioreactor, which was then submerged in a spent nuclear fuel pool, was designed. To characterise the biofilm on two different metallic materials (stainless steel and titanium), standard culture microbiological methods and molecular biology tools, as well as epifluorescence and scanning electron microscopy were used. The bacterial composition of the biofilm belongs to several phylogenetic groups (α, β, and γ-Proteobacteria, Actinobacteridae, and Firmicutes). The radioactivity of the biofilms was measured by gamma-ray spectrometry. Biofilms were able to retain radionuclides from radioactive water, especially ⁶⁰Co. The potential use of these biofilms in bioremediation of radioactive water is discussed.     

Woody riparian plant distributions in western Oregon,USA: comparing landscape and local scale factors

We studied riparian forests along mountain streams in four large watersheds of western Oregon and far northern California, USA, to better understand the multiscale controls on woody riparian vegetation in a geographically complex region. In each of the four-study watersheds, we sampled woody riparian vegetation in161-ha sampling reaches that straddled the stream channel. Within each hectare, we sampled riparian vegetation and local environmental factors in 40 m² sampling plots arrayed along topographic transects. We also surveyed natural disturbance gaps in 6 ha in each watershed to explore the effects of fine scale disturbance on species distributions. We compared species composition across our study watersheds and used Nonmetric Multidimensional Scaling (NMS) and chi-squared analyses to compare the relative importance of landscape scale climate variables and local topographic and disturbance variables in explaining species distributions at sampling plot and hectare scales. We noted substantial turnover in the riparian flora across the region, with greatest numbers of unique species in watersheds at the ends of the regional gradient. In NMS ordinations at both scales, variation in woody riparian species composition showed strongest correlations with climatic variables and Rubus spectabilis cover, but the latter was only an important factor in the two northern watersheds. At the smaller scale, topographic variables were also important. Chi-squared analyses confirmed that more species showed landscape scale habitat preferences (watershed associations) than associations with topographic position (94.7% vs. 42.7% of species tested) or gap versus forest setting (94.7% vs. 24.6% of species tested). The woody riparian flora of western Oregon shows important biogeographic variation; species distributions showed strong associations with climatic variables, which were the primary correlates of compositional change between riparian sites at both scales analyzed. Additional local variation in composition was explained by measures of topography and disturbance.     

产β—葡萄糖苷酶真菌诱变菌株快速筛选方法

报道了一种快速筛选产β-葡萄糖管酶真菌诱变菌株的方法。该法利用ρNPG经β-葡萄糖苷酶水解,水解产物ρNP在碱性条件下显色的原理。采用自制的特殊初筛平皿.经一年多的实践应用表明此法具有简便、灵敏、筛子消耗量小、筛选效率高等优点。     

Role of HLA DRB1*15 and HLA DRB1*16alleles in the genetic susceptibility to develop systemic lupus erythematosus (SLE) after Chikungunya and Zika viruses infection in México

Systemic lupus erythematosus (SLE) is a clinically and genetically heterogeneous disease particularly prevalent in Mexico. Althoughits etiology is unknown, genetic factors strongly influence its presenceas well as triggering factors, such as viral infections, including Cytomegalovirus and Epstein-Barr virus. Here,the study presents the appearance of de novoSLE (patients who did not present SLE before de virus infection, corroborated by serological analysis and negative for antinuclear antibodies) cases in Mexicans who live near the southern border of Mexico, who presented clinical symptoms of arthritic, hematological, mucocutaneous and renal SLE, after Zika and/ or Chikungunya virus infection. Low resolution class Ⅱ HLA typing was performed, which found a significantly increased frequency of HLA DRB1*02 (15 and 16)when compared to a group of 99 healthy individuals (P =0.001, OR=4.5, IC95% 1.8~11.0). All the patients were diagnosed with SLE 1 to 3 years after being confirmed with the Zika, and/or Chikungunya infection. At the point of acute viral infection, none of the patients presented clinical signs or symptoms of autoimmunity or were negative for antinuclear antibodies. In genetically susceptible individuals, Zika and Chikungunya viral infection can trigger SLE.     

Twenty-five years of change in forest structure and nesting behavior of Hawaiʻi ʻelepaio

Long-term ecological studies are invaluable for detecting changes over time. Forest restoration has been a conservation priority in Hawaiʻi, where invasive species have negatively impacted native bird habitat. During 1993–1994, a study was conducted of Hawaiʻi ʻelepaio (Chasiempis sandwichensis) nest site selection and forest composition in mesic montane forest along Mauna Loa Road in Hawaiʻi Volcanoes National Park. We returned to the site and repeated the methods used in the earlier study to record Hawaiʻi ʻelepaio nest site selection (tree species, tree and nest height, and tree girth [diameter at breast height, DBH]) from 2015 to 2017, and measured forest composition (tree density, relative abundance, height, and DBH) in 2019. Three times as many nests were found in ʻaʻaliʻi (Dodonaea viscosa) as in koa (Acacia koa) in both time periods. Heights of koa and ʻaʻaliʻi did not change, but their DBH increased over time. The relative height of nests in ʻaʻaliʻi trees did not change, but nests in koa were placed higher in the crown during the later study. Overall tree density increased from 1,619 (95% confidence interval [CI] = 1,499–1,740) trees/ha to 2,583 (95% CI = 2,176–3,096) trees/ha. Koa relative abundance was 53% of total trees earlier and 45% later, ʻaʻaliʻi remained at 47%, and māmane (Sophora chrysophylla) increased from 0 to 8% over time. Our results indicate that changes in forest composition affect nesting behavior, but in ways that are not necessarily simple or consistent.