Allometry of within-fruit reproductive allocation in subtropical dicot woody species

Angiosperm fruits typically consist of pericarp and seed, which collectively function to maximize plant reproductive success. Within-fruit reproductive allocation has been scarcely examined across a wide range of fruit types and taxa although it is critical to the understanding of the evolution of fruit size and seed size. We investigated seed size, fruit size, seed number per fruit (SNF), and within-fruit biomass allocation between seed mass and pericarp mass for 62 dicot woody species (27 deciduous and 35 evergreen species) of a subtropical evergreen forest in southwest China. At the fruit level, total pericarp mass (TPM) isometrically scaled with increasing total seed mass (TSM) in the evergreen species and in the pooled data set, while TPM increased faster than TSM in the deciduous species. The slope difference is possibly due to the difference in the timing of fruit development between the two species groups. At the seed level, seed package (pericarp mass per seed) isometrically scaled with increasing seed size in the deciduous group, but less than isometrically in the evergreens and in the pooled data set. SNF was negatively correlated with seed size but positively correlated with the proportion of pericarp within fruits. In conclusion, within-fruit biomass allocation is significantly affected by seed size, fruit size, and SNF in both deciduous and evergreen species. The implications of the observed scaling relationships are discussed in relation to seed size evolution and global patterns of seed size variation.     

Gene expression profiling of subcutaneous adipose tissue in morbid obesity using a focused microarray: Distinct expression of cell-cycle- and differentiation-related genes

Background

Prevalence of obesity is increasing to pandemic proportions. However, obese subjects differ in insulin resistance, adipokine production and co-morbidities. Based on fasting plasma analysis, obese subjects were grouped as Low Acylation Stimulating protein (ASP) and Triglyceride (TG) (LAT) vs High ASP and TG (HAT). Subcutaneous (SC) and omental (OM) adipose tissues (n = 21) were analysed by microarray, and biologic pathways in lipid metabolism and inflammation were specifically examined.

Methods

LAT and HAT groups were matched in age, obesity, insulin, and glucose, and had similar expression of insulin-related genes (InsR, IRS-1). ASP related genes tended to be increased in the HAT group and were correlated (factor B, adipsin, complement C3, p < 0.01 each). Differences between LAT and HAT group were almost exclusively in SC tissue, with little difference in OM tissue. Increased C5L2 (p < 0.01), an ASP receptor, in HAT suggests a compensatory ASP pathway, associated with increased TG storage.

Results

HAT adipose tissue demonstrated increased lipid related genes for storage (CD36, DGAT1, DGAT2, SCD1, FASN, and LPL), lipolysis (HSL, CES1, perilipin), fatty acid binding proteins (FABP1, FABP3) and adipocyte differentiation markers (CEBPα, CEBPβ, PPARγ). By contrast, oxidation related genes were decreased (AMPK, UCP1, CPT1, FABP7). HAT subjects had increased anti-inflammatory genes TGFB1, TIMP1, TIMP3, and TIMP4 while proinflammatory PIG7 and MMP2 were also significantly increased; all genes, p < 0.025.

Conclusion

Taken together, the profile of C5L2 receptor, ASP gene expression and metabolic factors in adipose tissue from morbidly obese HAT subjects suggests a compensatory response associated with the increased plasma ASP and TG.     

Cigarette smoking among school-going adolescents in Lithuania: Results from the 2005 Global Youth Tobacco Survey

Background

The majority of people who suffer morbidity due to smoking may have initiated smoking during adolescent period. The aim of this study is to determine the prevalence and associated factors for cigarette smoking among school-going adolescents in Lithuania.

Findings

Data from the Global Youth Tobacco Survey (GYTS) 2005 were used to conduct this study. Data were analyzed using SUDAAN software 9.03. Comparisons for categorical variables were done using the Pearson's Chi-square test. The cut of point for statistical significance was set at 5% level. Logistic regression analyses were conducted to determine factors associated with the outcome. Unadjusted odds ratios (OR) and adjusted odds ratios (AOR) together with their 95% confidence intervals (CI) are reported. Of the 1822 respondents, 35.8% males and 27.1% females reported being current cigarette smokers (p < 0.001). Having friends who smoke cigarettes was associated with smoking after controlling for age, gender, parental smoking status, and perception of risks of smoking (AOR = 3.76; 95% CI [2.33, 6.90] for some friends using tobacco; and AOR = 17.18; 95% CI [10.46, 28.21] for most or all friends using tobacco). Male gender and having one or both parents who smoke cigarettes were associated with smoking (AOR = 1.31; 95% CI [1.03, 1.66]) and AOR = 1.76; 95% CI [1.37, 2.27]) respectively).

Conclusions

There is a high prevalence of cigarette smoking among Lithuanian adolescents. Male adolescents and adolescents who have friends or parents who smoke should be the main target for tobacco control in Lithuania.     

Microbial community shifts influence patterns in tropical forest nitrogen fixation

The role of biodiversity in ecosystem function receives substantial attention, yet despite the diversity and functional relevance of microorganisms, relationships between microbial community structure and ecosystem processes remain largely unknown. We used tropical rain forest fertilization plots to directly compare the relative abundance, composition and diversity of free-living nitrogen (N)-fixer communities to in situ leaf litter N fixation rates. N fixation rates varied greatly within the landscape, and ‘hotspots’ of high N fixation activity were observed in both control and phosphorus (P)-fertilized plots. Compared with zones of average activity, the N fixation ‘hotspots’ in unfertilized plots were characterized by marked differences in N-fixer community composition and had substantially higher overall diversity. P additions increased the efficiency of N-fixer communities, resulting in elevated rates of fixation per nifH gene. Furthermore, P fertilization increased N fixation rates and N-fixer abundance, eliminated a highly novel group of N-fixers, and increased N-fixer diversity. Yet the relationships between diversity and function were not simple, and coupling rate measurements to indicators of community structure revealed a biological dynamism not apparent from process measurements alone. Taken together, these data suggest that the rain forest litter layer maintains high N fixation rates and unique N-fixing organisms and that, as observed in plant community ecology, structural shifts in N-fixing communities may partially explain significant differences in system-scale N fixation rates.     

Continuous Turnover of Carotenes and Chlorophyll a in Mature Leaves of Arabidopsis Revealed by 14CO2 Pulse-Chase Labeling

Carotenoid turnover was investigated in mature leaves of Arabidopsis (Arabidopsis thaliana) by ¹⁴CO₂ pulse-chase labeling under control-light (CL; 130 μmol photons m⁻² s⁻¹) and high-light (HL; 1,000 μmol photons m⁻² s⁻¹) conditions. Following a 30-min ¹⁴CO₂ administration, photosynthetically fixed ¹⁴C was quickly incorporated in β-carotene (β-C) and chlorophyll a (Chl a) in all samples during a chase of up to 10 h. In contrast, ¹⁴C was not detected in Chl b and xanthophylls, even when steady-state amounts of the xanthophyll-cycle pigments and lutein increased markedly, presumably by de novo synthesis, in CL-grown plants under HL. Different light conditions during the chase did not affect the ¹⁴C fractions incorporated in β-C and Chl a, whereas long-term HL acclimation significantly enhanced ¹⁴C labeling of Chl a but not β-C. Consequently, the maximal ¹⁴C signal ratio between β-C and Chl a was much lower in HL-grown plants (1:10) than in CL-grown plants (1:4). In lut5 mutants, containing α-carotene (α-C) together with reduced amounts of β-C, remarkably high ¹⁴C labeling was found for α-C while the labeling efficiency of Chl a was similar to that of wild-type plants. The maximum ¹⁴C ratios between carotenes and Chl a were 1:2 for α-C:Chl a and 1:5 for β-C:Chl a in CL-grown lut5 plants, suggesting high turnover of α-C. The data demonstrate continuous synthesis and degradation of carotenes and Chl a in photosynthesizing leaves and indicate distinct acclimatory responses of their turnover to changing irradiance. In addition, the results are discussed in the context of photosystem II repair cycle and D1 protein turnover.Carotenoids are classified as accessory pigments in photosynthesis because they augment light harvesting in the blue spectral region by transferring the absorbed light energy to chlorophyll (Chl). However, the universal occurrence of carotenoids in photosynthetic cells, from bacteria to higher plants, indicates their essential roles, rather than mere accessory roles, in photosynthesis. Under excess light, carotenoids provide protection against photooxidative damage by facilitating dissipation of excitation energy from singlet- or triplet-state Chl and scavenging highly reactive singlet oxygen, which is generated through interaction between triplet excited Chl and oxygen (Demmig-Adams, 1990; Müller et al., 2001). These photoprotective functions make carotenoids indispensable for oxygenic photosynthesis, as demonstrated by lethal effects of inhibitors of carotenoid biosynthesis in plants (Bramley, 1993). Regulation of light harvesting and photoprotection by carotenoids requires their close proximity as well as the proper orientation to Chl molecules in pigment-protein complexes of PSI and PSII. Furthermore, a small fraction of non-protein-bound carotenoids serves as antioxidants in the lipid phase of photosynthetic membranes (Havaux and Niyogi, 1999; Havaux et al., 2004) and influences the structure and fluidity of the lipid bilayer (Gruszecki and Strzałka, 2005). Despite these and other lines of defense, the PSII reaction center polypeptide D1, and to a lesser extent also D2, undergo frequent photooxidative damage and repair in the light (Melis, 1999; Baena-González and Aro, 2002). When the repair process cannot keep up with the rate of photodamage, the overall quantum yield of PSII declines.Carotenoids are derived from isoprenoid precursors in plastids (for reviews on carotenoid biosynthesis in plants, see Lichtenthaler, 1999; Hirschberg, 2001; DellaPenna and Pogson, 2006; Giuliano et al., 2008; Tanaka et al., 2008; Cazzonelli and Pogson, 2010). Following the formation of linear C₄₀ lycopene, the pathway splits into two branches of major cyclic carotenoids: the β,β-branch gives rise to β-carotene (β-C) having two β-rings, whereas the β,ϵ-branch leads to formation of α-carotene (α-C) having one β-ring and one ϵ-ring. Hydroxylation of β-C and α-C produces the xanthophylls zeaxanthin (Z) and lutein (L), respectively. In the β,β-branch, epoxidation of the β-rings of Z results in successive synthesis of antheraxanthin (A) and violaxanthin (V); subsequently, V can be converted to neoxanthin (N), the last carotenoid product of the β,β-branch. Except for some species (García-Plazaola et al., 2007), L does not undergo β-ring epoxidation and the β,ϵ-branch thus stops with L, the most abundant carotenoid in leaves.Each of these carotenoids occupies specific binding sites in the photosynthetic apparatus to fulfill distinct roles. In both PSI and PSII, carotenes (α-C and β-C) are generally bound in core complexes, which also harbor Chl a molecules, while the majority of xanthophylls (L, Z, A, V, and N) are bound in light-harvesting antenna complexes together with Chl a and Chl b molecules (Bassi et al., 1993; Lee and Thornber, 1995). Accumulation of β-C in core complexes is a common feature of diverse photosynthetic organisms, whereas the occurrence of α-C in addition to β-C is restricted to certain taxa. For higher plants, α-C has been found in leaves of some, but not all, shade-tolerant species (Thayer and Björkman, 1990; Demmig-Adams and Adams, 1992; Demmig-Adams, 1998; Matsubara et al., 2009). Based on this photoacclimatory behavior, it has been proposed that α-C may function as a light-harvesting pigment while β-C may contribute to photoprotection (Krause et al., 2001), presumably by scavenging singlet oxygen and mediating a cyclic electron transfer around PSII (Tracewell et al., 2001; Telfer, 2005).Pronounced light-dependent changes are also observed for xanthophyll composition in light-harvesting antenna complexes. In a short term (minutes to hours), operation of the xanthophyll cycle, involving Z, A, and V, modulates levels of Z in a light-dependent manner. It is widely accepted that Z is able to enhance the dissipation of excess light energy from singlet excited Chl while V is not (Demmig-Adams, 1990; Müller et al., 2001). Long-term acclimation (days) to strong irradiance typically results in an increased pool size of the xanthophyll-cycle pigments (V + A + Z) and downsizing of PSII antenna, as indicated by a greater Chl a-to-Chl b ratio (Demmig-Adams and Adams, 1992; Demmig-Adams, 1998; Matsubara et al., 2009). Based on the observed changes in steady-state amounts of xanthophylls and carotenes following irradiance shifts, alterations in the balance between biosynthesis and degradation, or turnover, have been implicated as a mechanism for long-term adjustment of carotenoid levels in leaves (Förster et al., 2009). However, just how much biosynthesis and degradation of different carotenoids occurs in photosynthesizing green leaves is an open question to date.In order to gain insight into carotenoid turnover of mature leaves, we conducted ¹⁴CO₂ pulse-chase labeling experiments with Arabidopsis (Arabidopsis thaliana) plants. Carotenoid turnover has been studied in algae in the past by applying [¹⁴C]bicarbonate (Blass et al., 1959; Grumbach et al., 1978); for example, no more than 1% to 2% of the photosynthetically incorporated ¹⁴C was allocated to the lipophilic fraction containing Chl and carotenoid in Chlorella pyrenoidosa after a 2-h pulse application (Grumbach et al., 1978). Even lower labeling efficiency is expected for photosynthetic pigments in nongrowing green leaves, in which pigment turnover takes place almost exclusively as part of the maintenance and acclimation of photosynthetic membranes. To overcome this intrinsic but anticipated difficulty, a ¹⁴CO₂ application setup was established for efficient and reproducible ¹⁴CO₂ incorporation in detached leaves of Arabidopsis during a short (30-min) pulse period. Moreover, a method of pigment separation was developed for ¹⁴C detection in concentrated leaf pigment extracts using a radio-HPLC system. Because carotenoid composition exhibits marked sun-shade responses in leaves (Demmig-Adams and Adams, 1992; Demmig-Adams, 1998; Matsubara et al., 2009), ¹⁴CO₂ labeling patterns were studied in three different sets of Arabidopsis plants: (1) plants grown under 130 μmol photons m⁻² s⁻¹ (control light [CL]) and exposed to CL during a chase period of up to 10 h (CL plants); (2) plants acclimated to 1,000 μmol photons m⁻² s⁻¹ (high light [HL]) for 2 weeks and exposed to HL during the chase period (HL plants); and (3) plants grown under CL but exposed to HL during the chase period (CL→HL plants). These treatments simulated short-term (CL→HL) and long-term (CL or HL) responses to irradiance. Finally, as ¹⁴C was found to be rapidly incorporated in β-C and Chl a molecules in leaves of wild-type plants, in which β-C represents the only carotene species, ¹⁴C labeling experiments were also conducted with leaves of lut5 mutants containing both α-C and β-C (Fiore et al., 2006; Kim and DellaPenna, 2006) to compare turnover of the two carotenes.     

Earthworm effects on plant growth do not necessarily decrease with soil fertility

Earthworms are known to generally increase plant growth. However, because plant-earthworm interactions are potentially mediated by soil characteristics the response of plants to earthworms should depend on the soil type. In a greenhouse microcosm experiment, the responsiveness of plants (Veronica persica, Trifolium dubium and Poa annua) to two earthworm species (in combination or not) belonging to different functional groups (Aporrectodea. caliginosa an endogeic species, Lumbricus terrestris an anecic species) was measured in term of biomass accumulation. This responsiveness was compared in two soils (nutrient rich and nutrient poor) and two mineral fertilization treatments (with and without). The main significant effects on plant growth were due to the anecic earthworm species. L. terrestris increased the shoot biomass and the total biomass of T. dubium only in the rich soil. It increased also the total biomass of P. annua without mineral fertilization but had the opposite effect with fertilization. Mineral fertilization, in the presence of L. terrestris, also reduced the total biomass of V. persica. L. terrestris did not only affect plant growth. In P. annua and V. persica A. caliginosa and L. terrestris also affected the shoot/root ratio and this effect depended on soil type. Finally, few significant interactions were found between the anecic and the endogeic earthworms and these interactions did not depend on the soil type. A general idea would be that earthworms mostly increase plant growth through the enhancement of mineralization and that earthworm effects should decrease in nutrient-rich soils or with mineral fertilization. However, our results show that this view does not hold and that other mechanisms are influential.     

Evolving thermostability in mutant libraries of ligninolytic oxidoreductases expressed in yeast

Background  

In the picture of a laboratory evolution experiment, to improve the thermostability whilst maintaining the activity requires of suitable procedures to generate diversity in combination with robust high-throughput protocols. The current work describes how to achieve this goal by engineering ligninolytic oxidoreductases (a high-redox potential laccase -HRPL- and a versatile peroxidase, -VP-) functionally expressed in Saccharomyces cerevisiae.     

<Emphasis Type="Italic">In planta</Emphasis> gene expression analysis of <Emphasis Type="Italic">Xanthomonas oryzae</Emphasis> pathovar <Emphasis Type="Italic">oryzae</Emphasis>, African strain MAI1

Background  

Bacterial leaf blight causes significant yield losses in rice crops throughout Asia and Africa. Although both the Asian and African strains of the pathogen, Xanthomonas oryzae pv. oryzae (Xoo), induce similar symptoms, they are nevertheless genetically different, with the African strains being more closely related to the Asian X. oryzae pv. oryzicola (Xoc).