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41.
42.
The effective population size of Anopheles gambiae in Kenya: implications for population structure 总被引:4,自引:0,他引:4
We estimated current and long-term effective population size (Ne) of two
Anopheles gambiae (savanna cytotype) populations in Kenya. Temporal
variation at nine microsatellite loci in each population sampled 7 and 9
years apart and genetic diversity in each sample were analyzed to answer
the following questions. (1) Do bottlenecks occur in Kenyan populations of
A. gambiae? (2) How variable are different populations with respect to
their current and long-term Ne values? (3) What are the implications of
these results on population structure and history? The estimates of Ne of
Asembo and Jego were 6,359 and 4,258, respectively, and the lower 95%
limits were 2,455 and 1,669, respectively. Thus, despite the typical
observation of low density at the village level during the dry season,
large populations are maintained annually. Large current Ne is consistent
with previous studies showing low differentiation across the continent,
especially under Wright's isolation-by-distance model. Current Ne in Asembo
was 1.5-fold higher than in Jego, but this difference was not significant.
Long-term Ne in Asembo (22,667) was 2.9-fold higher than that in Jego
(7,855) based on the stepwise mutation model. The difference between
populations was significant at both time points regardless of whether
long-term Ne values were calculated based on the stepwise mutation model or
the infinite-alleles model. Heterozygosity in Jego declined significantly
between 1987 (59%) and 1996 (54%), whereas heterozygosity in Asembo was
stable (66%-65%). Despite the relatively high and significant
differentiation between Asembo and Jego (FST = 0.072-0.10, RST = 0.037-
0.038), all alleles in Jego were found in Asembo but not vice versa. All of
these findings suggest that lower Ne in Jego magnifies differentiation
between the two populations. The long-term Ne was biased downward, because
its calculation was based on an upper bound estimate of microsatellite
mutation rate. Ne values based on mtDNA and allozymes were an order of
magnitude higher. Long-term Ne therefore, is probably measured in hundreds
of thousands and hence does not support a recent expansion of this species
from a small population.
相似文献
43.
Arvid WA Kamps Dick Hendriks Jan W Smit Edo Vellenga 《Cancer immunology, immunotherapy : CII》1999,16(1):46-52
The present study focused on whether it is possible to expand monocytic cells from CD34+ progenitor cells by using macrophage colony-stimulating factor (M-CSF) in the absence and presence of mast cell growth factor
(MGF) and IL-6. It was demonstrated that CD34+ cells differentiate without expansion to functional mature monocytic cells in the presence of M-CSF or combinations of M-CSF
plus IL-6 and MGF. A different response pattern was observed for the number of clonogenic cells. The addition of IL-6 or both
IL-6 and MGF to M-CSF containing cultures resulted in significant higher numbers of colony-forming unit-macrophage (CFU-M)
as tested in clonogenic and3H-thymidine assays. Furthermore, M-CSF plus both IL-6 and MGF appeared to be the most potent combination to preserve the monocytic
precursor in cell suspension culture assays. These results indicate that IL-6 and MGF in conjunction with M-CSF affect CD34+ cells especially at precursor level without distinct effect on the more mature stages. Secondly we studied whether M-CSF
is only critical for the monocytic lineage or also affects dendritic cell (DC) development. Indeed, we were able to culture
CD83+ DC from CD34+ progenitor cells in the presence of M-CSF in conjunction with TNF-α, IL-4, and MGF although their absolute number is almost
threefold lower than the number of CD83+ cells yielded from GM-CSF plus TNF-α, IL-4, and MGF stimulated CD34+ cells. 相似文献
44.
A gas chromatographic-electron capture detection (GC-ECD) method for the analysis of deoxynivalenol (DON) in cereals was investigated.
The sample was extracted with a mixture of acetonitrile-water and purified with a MycoSep #225 column. The silylation was
performed with Tri-Sil-TBT reagent, followed by dilution with hexane and a washing step with buffer. By using Tri-Sil-TBT
reagent no double peaks were observed for DON in the gas chromatograms, in comparison with two other silylation reagents TMSI
and Tri-Sil-Z. The use of trichothecolone (TRI) as an internal standard for DON was studied in order to indicate possible
problems in the derivatisation reaction. TRI proved to be a relatively good internal standard for DON in cereal samples, as
well as 1,1-bis-(4-chlorophenyl)-2,2-dichloroethylene (DDE), which was used as a GC standard for ensuring the function of
GC-ECD. During the study, a matrix effect was clearly observed between the cereal matrix-assisted calibration curve and the
calibration curve prepared without cereal matrix. The results of spiked and reference material samples, quantified with the
calibration curve prepared without and with matrix, demonstrated that the matrix affects the results. However, after recovery
correction the results were comparable. The validation results demonstrated that the GC-ECD method for DON analysis in cereals
is sufficiently reliable. 相似文献
45.
Corry-Anke Brandsma Machteld N Hylkema Barry WA van der Strate Dirk-Jan Slebos Marjan A Luinge Marie Geerlings Wim Timens Dirkje S Postma Huib AM Kerstjens 《Respiratory research》2008,9(1):17
Background
Smoking is the most important cause for the development of COPD. Since not all smokers develop COPD, it is obvious that other factors must be involved in disease development. We hypothesize that heme oxygenase-1 (HO-1), a protective enzyme against oxidative stress and inflammation, is insufficiently upregulated in COPD.The effects of HO-1 modulation on cigarette smoke induced inflammation and emphysema were tested in a smoking mouse model.Methods
Mice were either exposed or sham exposed to cigarette smoke exposure for 20 weeks. Cobalt protoporphyrin or tin protoporphyrin was injected during this period to induce or inhibit HO-1 activity, respectively. Afterwards, emphysema development, levels of inflammatory cells and cytokines, and the presence of B-cell infiltrates in lung tissue were analyzed.Results
Smoke exposure induced emphysema and increased the numbers of inflammatory cells and numbers of B-cell infiltrates, as well as the levels of inflammatory cytokines in lung tissue. HO-1 modulation had no effects on smoke induced emphysema development, or the increases in neutrophils and macrophages and inflammatory cytokines. Interestingly, HO-1 induction prevented the development of smoke induced B-cell infiltrates and increased the levels of CD4+CD25+ T cells and Foxp3 positive cells in the lungs. Additionally, the CD4+CD25+ T cells correlated positively with the number of Foxp3 positive cells in lung tissue, indicating that these cells were regulatory T cells.Conclusion
These results support the concept that HO-1 expression influences regulatory T cells and indicates that this mechanism is involved in the suppression of smoke induced B-cell infiltrates. The translation of this interaction to human COPD should now be pursued. 相似文献46.
High risk populations and HIV-1 infection in China 总被引:1,自引:0,他引:1
Tuo Fu ZHU- * Chun Hui WANG Peng LIN Na HE Departments of Laboratory Medicine Departments of Microbiology University of Washington School of Medicine Seattle WA USA Programs in Infectious Diseases Fred Hutchinson Cancer Research Center Seattle WA - USA Guangdong Center for Disease Control Prevention Guangzhou China School of Public Health Fudan University Shanghai China 《Cell research》2005,(Z1)
INTRODUCTION HIV has spread to all of China’s 31 provinces, autono- mous regions and municipalities, creating one of the fast- est-growing HIV/AIDS epidemics in the world [1,2]. The HIV/AIDS epidemic in China has gone through three phases: the Entry Phase (1985 -1988), the Spreading Phase (1989-1994) and the Expansion Phase (1995- present). The striking increase of HIV-1 infections over the past few years may herald entry into a new fourth phase that will include much larger nu… 相似文献
47.
Both the Entamoeba histolytica lectin, a virulence factor for the causative
agent of amebiasis, and the mammalian hepatic lectin bind to
N-acetylgalactosamine (GalNAc) and galactose (Gal) nonreducing termini on
oligosaccharides, with preference for GalNAc. Polyvalent GalNAc-
derivatized neoglycoproteins have >1000-fold enhanced binding affinity
for both lectins (Adler,P., Wood,S.J., Lee,Y.C., Lee,R.T., Petri,W.A.,Jr.
and Schnaar,R.L.,1995, J. Biol. Chem ., 270, 5164-5171). Substructural
specificity studies revealed that the 3-OH and 4-OH groups of GalNAc were
required for binding to both lectins, whereas only the E.histolytica lectin
required the 6-OH group. Whereas GalNAc binds with 4-fold lower affinity to
the E.histolytica lectin than to the mammalian hepatic lectin,
galactosamine and N-benzoyl galactosamine bind with higher affinity to the
E. histolytica lectin. Therefore, a synthetic scheme for converting
polyamine carriers to poly-N-acyl galactosamine derivatives (linked through
the galactosamine primary amino group) was developed to test whether such
ligands would bind the E.histolytica lectin with high specificity and high
affinity. Contrary to expectations, polyvalent derivatives including
GalN6lys5, GalN4desmosine, GalN4StarburstTMdendrimer, and
GalN8StarburstTMdendrimer demonstrated highly enhanced binding to the
mammalian hepatic lectin but little or no enhancement of binding to the
E.histolytica lectin. We propose that the mammalian hepatic lectin binds
with greatest affinity to GalNAc "miniclusters," which mimic branched
termini of N-linked oligosaccharides, whereas the E.histolytica lectin
binds most effectively to "maxiclusters," which may mimic more widely
spaced GalNAc residues on intestinal mucins.
相似文献
48.
Janneke Anink Charlotte M Nusman Lisette WA van Suijlekom-Smit Rick R van Rijn Mario Maas Marion AJ van Rossum 《Arthritis research & therapy》2014,16(4)
Introduction
Chronic inflammation combined with glucocorticoid treatment and immobilization puts juvenile idiopathic arthritis (JIA) patients at risk of impaired growth and reduced bone mineral density (BMD). Conventional methods for evaluating bone age and BMD are time-consuming or come with additional costs and radiation exposure. In addition, an automated measurement of bone age and BMD is likely to be more consistent than visual evaluation. In this study, we aimed to evaluate the feasibility of an automated method for determination of bone age and (cortical) bone mineral density (cBMD) in severely affected JIA patients. A secondary objective was to describe bone age and cBMD in this specific JIA population eligible for biologic treatment.Methods
In total, 69 patients with standard hand radiographs at the start of etanercept treatment and of calendar age within the reliability ranges (2.5 to 17 years for boys and 2 to 15 years for girls) were extracted from the Dutch Arthritis and Biologicals in Children register. Radiographs were analyzed using the BoneXpert method, thus automatically determining bone age and cBMD expressed as bone health index (BHI). Agreement between measurements of the left- and right-hand radiographs and a repeated measurement of the left hand were assessed with the intraclass correlation coefficient (ICC). Regression analysis was used to identify variables associated with Z-scores of bone age and BHI.Results
The BoneXpert method was reliable in the evaluation of radiographs of 67 patients (radiographs of 2 patients were rejected because of poor image quality). Agreement between left- and right-hand radiographs (ICC = 0.838 to 0.996) and repeated measurements (ICC = 0.999 to 1.000) was good. Mean Z-scores of bone age (−0.36, P = 0.051) and BHI (−0.85, P < 0.001) were lower compared to the healthy population. Glucocorticoid use was associated with delayed bone age (0.79 standard deviation (SD), P = 0.028), and male gender was associated with a lower Z-score of BHI (0.65 SD, P = 0.021).Conclusions
BoneXpert is an easy-to-use method for assessing bone age and cBMD in patients with JIA, provided that radiographs are of reasonable quality and patients’ bone age lies within the age ranges of the program. The population investigated had delayed bone maturation and lower cBMD than healthy children.Electronic supplementary material
The online version of this article (doi:10.1186/s13075-014-0424-1) contains supplementary material, which is available to authorized users. 相似文献49.
This review considers the properties of biliproteins from cyanobacteria and red algae that grow in extreme habitats. Three situations are presented: cyanobacteria that grow at high temperatures; a red alga that grows in acidic conditions at high temperature; and an Antarctic red alga that grows in the cold in dim light conditions. In particular, the properties of their biliproteins are compared to those from organisms from more usual environments. C-phycocyanins from two cyanobacteria able to grow at high temperatures are found to differ in their stabilities when compared to C-phycocyanin from mesophilic algae. They differ in opposite ways, however. One is more stable to dissociation than the mesophilic protein, and the other is more easily dissociated at low temperatures. The thermophilic proteins resist thermal denaturation much better than the mesophilic proteins. The most thermophilic cyanobacterium has a C-phycocyanin with a unique blue-shifted absorption maximum which does not appear to be part of the adaptation of the cyanobacterium to high temperature. The C-phycocyanin from the high-temperature red alga is able to resist dissociation better than mesophilic C-phycocyanins. Electron micrographs show the phycobilisomes of these algae. The Antarctic alga grows under ice at some distance down the water column. Its R-phycoerythrin has a novel absorption spectrum that gives the alga an improved ability to harvest blue light. This may enhance its survival in its light-deprived habitat. 相似文献
50.
目的构建用于呼吸道合胞病毒(respiratory syncytial virus,RSV)体外拯救的RSV基因组全长cDNA克隆,并进行鉴定。方法根据RSV Long株基因组序列设计并合成引物,利用RT-PCR技术分6段扩增RSV LZ01/09基因组序列并构建克隆载体;测序后,利用重叠PCR与酶切连接技术,根据基因组序列选择特异性酶切位点,引入Kpn I、Xma I和Sal I酶切位点,构建成4个亚克隆载体;将亚克隆载体的插入片段连接至经过改造且包含T7启动子、锤头状核酶、多克隆位点、丁肝核酶、T7终止子的p RSV1载体中,构建RSV基因组全长cDNA克隆;对克隆全长cDNA序列进行测定,与亲本RSV LZ01/09基因组进行同源性比对分析,并与RSV实验参比株进行系统进化树分析。结果测序结果显示,RSV LZ 01/09的基因组全长为15 204 bp,与GenBank公布的RSV基因组序列长度相当,将完整的序列提交GenBank,登录号为KY782635;酶切及测序结果显示,用于RSV全长cDNA克隆构建的基本载体p BSKS-MCS(简称p RSV1)与预期相符,RSV全长基因组cDNA克隆质粒(简称转录载体p RSV1-4F)酶切片段大小与预期一致;同源性比对结果显示,全长cDNA序列与亲本RSV LZ01/09基因组序列同源性高达99.83%;系统进化树分析结果显示,其与RSV-A亚型序列同属于一个分支。结论测序及酶切分析结果表明已成功构建RSVLZ01/09基因组全长cDNA克隆,为建立拯救RSV重组病毒的反向遗传学系统平台奠定了基础。 相似文献