Haplotype structure and population genetic inferences from nucleotide-sequence variation in human lipoprotein lipase.

Allelic variation in 9.7 kb of genomic DNA sequence from the human lipoprotein lipase gene (LPL) was scored in 71 healthy individuals (142 chromosomes) from three populations: African Americans (24) from Jackson, MS; Finns (24) from North Karelia, Finland; and non-Hispanic Whites (23) from Rochester, MN. The sequences had a total of 88 variable sites, with a nucleotide diversity (site-specific heterozygosity) of .002+/-.001 across this 9.7-kb region. The frequency spectrum of nucleotide variation exhibited a slight excess of heterozygosity, but, in general, the data fit expectations of the infinite-sites model of mutation and genetic drift. Allele-specific PCR helped resolve linkage phases, and a total of 88 distinct haplotypes were identified. For 1,410 (64%) of the 2,211 site pairs, all four possible gametes were present in these haplotypes, reflecting a rich history of past recombination. Despite the strong evidence for recombination, extensive linkage disequilibrium was observed. The number of haplotypes generally is much greater than the number expected under the infinite-sites model, but there was sufficient multisite linkage disequilibrium to reveal two major clades, which appear to be very old. Variation in this region of LPL may depart from the variation expected under a simple, neutral model, owing to complex historical patterns of population founding, drift, selection, and recombination. These data suggest that the design and interpretation of disease-association studies may not be as straightforward as often is assumed.     

Environment-dependent mechanism of dehalogenation by Rhodococcus chlorophenolicus PCP-1

Cells and cell-free preparations of a soil-bioremediating organism, Rhodococcus chlorophenolicus PCP-1, dehalogenated polychlorophenols both under aerobic and anaerobic conditions. Under aerobic conditions molecular O₂ served as the source of oxygen for the dechlorinating para-hydroxylation reaction. Chlorophenols were dehalogenated and para-hydroxylated also under anaerobic conditions by a cyt P-450 enzyme. Water was used anaerobically as an oxygen source but the reaction required the presence of sulphite ions or iodosobenzene. When the dehalogenating enzyme was given a choice between molecular O₂ and water in the presence of sulphite ions or iodosobenzene, the oxygen was preferably derived from water.Dedicated to the honour of Prof. Dr. Norberto Palleroni for the occasion of his 70th birthday Correspondence to: J. S. Uotila     

Ultrastructure of induced transitions in the chromatin organization of Drosophila polytene chromosomes

The structural changes taking place in the salivary chromosomes of Drosophila melanogaster after treatment with urea-sodium hydroxide solution were studied by light and electron microscopy. An essential effect of the treatment is the gradual disappearance of the chromosomal banding pattern due to uncoiling of the chromomeric fibrils. During this process a huge amount of very thin fibrillar network is detached from the salivary chromosomes, and the longitudinal interband fibrils become aggregated to form a distinct central axis. This gives apparent likeness to a lampbrush chromosome. Even though at the light microscope level certain regions of the axial core appear to have been lost, no signs of breaks in the linear coherence of the chromosome can be observed in the electron micrographs. Because uncoiling of the chromomeres does not interrupt the continuity of the linear fibres, these observations on induced transitions lend support to the idea that the chromomeric fibrils are to some extent independent and dissimilar as compared to the interchromomeric fibres.Dedicated to Professor Esko Suomalainen in honour of his 60th birthday on June 11, 1970.     

Degradability of dissolved soil organic carbon and nitrogen in relation to tree species

The degradability and chemical characteristics of water-extractable dissolved organic carbon (DOC) and nitrogen (DON) from the humus layer of silver birch (Betula pendula Roth), Norway spruce (Picea abies (L.) Karst.) and Scots pine (Pinus sylvestris L.) stands were compared in short-term incubation of soil solutions. For all extracts the degradation of DOC and DON was low (12-17% loss) and increased in the order: birch, spruce and pine. In the humus layer under pine a relatively larger pool of rapidly degrading dissolved soil organic matter (DOM) was indicated by the [3H]thymidine incorporation technique, which measures the availability of DOM to bacteria. The degradation of DOC was explained by a decrease in the hydrophilic fraction. For DON, however, both the hydrophilic and hydrophobic fractions tended to decrease during incubation. No major differences in concentrations of hydrophilic and hydrophobic fractions were detected between tree species. Molecular size distribution of DOC and DON, however, revealed slight initial differences between birch and conifers as well as a change in birch extract during incubation. The depletion of very rapidly degrading fractions (e.g., root exudates and compounds from the litter) may explain the low degradability of DOM in the humus layer under birch.     

Inhibition of nitrification in forest soil by monoterpenes

Nitrate production was detected in untreated soil of a Norway spruce (Picea abies L.) stand only after clear-cutting the stand. The aim of this study was to determine whether allelochemical inhibition of nitrification by monoterpenes played any role in inhibiting nitrification in the stand. Therefore, soils from a clear-cut plot and from a forest plot were studied. In the field, monoterpenes (mostly - and -pinenes), measured by soil microair diffusive samplers, were intensively produced in the forest plot, but not in the clear-cut plot. In the laboratory, soil samples taken from the forest plot produced only small amounts of monoterpenes, indicating that monoterpenes were mainly produced by the roots and not to great extent by the soil microbial population. The effect of a mixture of monoterpenes (seven major monoterpenes detected in the field) on net nitrification, net N mineralization and denitrification activities of soil from the clear cut plot, and on carbon mineralization of soils from both the forest and clear-cut plots, was studied in the laboratory. In both aerobic incubation experiments and in soil suspensions with excess NH4-N, nitrification was inhibited by exposure to the vapours of monoterpenes at similar concentrations at which they had been detected in forest plot. This indicates direct inhibition of nitrification by monoterpenes. Exposure to monoterpenes did not affect denitrification. However, it increased respiration activity of both soils. This could also indicate indirect inhibition of nitrification by monoterpenes, due to immobilization of mineral N. Thus it seems that monoterpenes could play a role in inhibiting nitrification in the forest soil.     

Early plant succession in two abandoned cut-over peatland areas

Initial stages of plant succession (from 0 to 8 or 9 yr) were studied on abandoned peat harvest sites of two adjacent areas in Finland. At the Mustasuo area only 13 field layer species, all perennials, and 3 ground layer species became established during that period and species composition stayed relatively constant. All species occurred sparsely with low biomass. The Riitasuo area was colonized by 43 field layer and 19 ground layer species during the first 8 yr of succession. In that area the originally plantless sites were totally covered by plants within a few years. Many of the first species to arrive were annuals, most of which were soon replaced by perennial species. The great differences between the two areas in the rate and pattern of early succession are suggested to arise from differences in the seed sources and in the physical and chemical characteristics of the soil. The areas were found to differ especially by the thickness of the remaining peat layer, by the particle size distribution of the peat soil and by the contents of nitrate and ammonium nitrogen of the soil.     

Biological and environmental monitoring of occupational exposure to cyclophosphamide in industry and hospitals

The aims of the study were to clarify potential exposure situations to anticancer agents during industrial processing, drug manufacture and hospital administration, using cyclophosphamide (CP) as the model compound. CP is considered an animal and human carcinogen, and it is shown to be an indirect mutagen in various test systems using several genetic endpoints. Environmental monitoring was performed by collecting ambient air samples during the different processing and handling stages. Both stationary and personal sampling was used. CP was analyzed by liquid chromatography (HPLC) and mass spectrometry (MS). The process materials and intermediates were also analyzed for genotoxic activity using the Ames test and SCE induction in CHO cells as endpoints. Biological monitoring studies were performed on 147 persons representing 5 groups of workers, control subjects and patients. In the experimental part of the project, the intermediates in the CP manufacturing process, CP I (nor-nitrogen mustard) and CP II (phosphoroxydichloride mustard) were found directly active in the 2 genotoxicity tests. These findings led to improvements in work hygiene when handling CP I and CP II in the process. The CP measurements showed that the highest potential-exposure sites occurred during specific operations of the process, e.g., during emptying of the drying drum and during tablet mass preparation (the range of CP concentrations in air was 0.16-0.49 mg/m3). The correlation between indirect genotoxicity and chemical analyses of the ambient air samples was good, revealing the activity to be due to cyclophosphamide. However, the air samples were found mutagenic without metabolic activation also in the beginning of the process; this is obviously due to CP II particles in the ambient air, since no CP was detected chemically. The personal protection of workers in the plant collaborating in the study is efficient and the production unit is equipped with the best available techniques to protect both the personnel and the quality of the drug. Both the urine mutagenicity analyses using strain TA1535 of Salmonella typhimurium as indicator and the cytogenetic analyses of peripheral blood lymphocytes using sister-chromatid exchanges or structural chromosomal aberrations as endpoints were negative. However, a statistically nonsignificant trend in increased number of micronuclei was observed in binucleated lymphocytes of the worker groups as compared with controls. The studies on the hospital use of CP were performed in 3 oncological units and 1 pharmacy unit.(ABSTRACT TRUNCATED AT 400 WORDS)     

Temporal variation in reproductive allocation in a shield bug Elasmostethus interstinctus

We investigated changes in the reproductive output and the effect of female phenotype on reproductive parameters in a shield bug Elasmostethus interstinctus (L.) (Heteroptera: Acanthosomatidae) over the whole reproductive period. At the beginning and the middle of the reproductive period eggs were smaller than at the end of the period. Clutch mass and number of eggs per clutch decreased in laying sequence, first clutches being much larger than any of the later ones. Lifetime fecundity correlated positively with female size: large females produced more eggs and lived longer than small ones. Egg size did not vary with female size. Offspring survival until adulthood increased with egg weight. Individuals overwinter before reproduction, and because the nymphs from later-laid eggs have the least time to gather resources before overwintering, it may be important for later-laid eggs to be of high quality. Reproductive allocation varies during the reproductive period; females allocate resources relatively more to offspring number at the beginning of the reproductive period and more to offspring quality at the end of their life.