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101.
Ab initio molecular dynamics study of proton transfer in a polyglycine analog of the ion channel gramicidin A. 下载免费PDF全文
Proton transfer in biological systems is thought to often proceed through hydrogen-bonded chains of water molecules. The ion channel, gramicidin A (gA), houses within its helical structure just such a chain. Using the density functional theory based ab initio molecular dynamics Car-Parrinello method, the structure and dynamics of proton diffusion through a polyglycine analog of the gA ion channel has been investigated. In the channel, a proton, which is initially present as hydronium (H3O+), rapidly forms a strong hydrogen bond with a nearest neighbor water, yielding a transient H5O2+ complex. As in bulk water, strong hydrogen bonding of this complex to a second neighbor solvation shell is required for proton transfer to occur. Within gA, this second neighbor shell included not only a channel water molecule but also a carbonyl of the channel backbone. The present calculations suggest a transport mechanism in which a priori carbonyl solvation is a requirement for proton transfer. 相似文献
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C S Buer K T Gahagan GA Swartzlander Jr P J Weathers 《Journal of industrial microbiology & biotechnology》1998,21(4-5):233-236
Comparison of the optical trapping efficiency of Agrobacterium rhizogenes and A. tumefaciens strains indicates the A. rhizogenes strain, ATCC 11325, is significantly less efficiently trapped than A. rhizogenes A4, ATCC 15834, and the A. tumefaciens strain LBA4404. Differences were also found in capsule generation, growth media viscosity, and transmission electron microscopy
negative staining. These observations imply a difference in surface structure exists. Calcofluor fluorescence suggests the
difference involves an exopolysaccharide.
Received 1 July 1998/ Accepted in revised form 5 October 1998 相似文献
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SUNG MIN BOO HAN SOON KIM WOONGGHI SHIN GA HUN BOO SUNG MI CHO BOK YEON JO JEE‐HWAN KIM JIN HEE KIM EUN CHAN YANG PETER A. SIVER ALEXANDER P. WOLFE DEBASHISH BHATTACHARYA ROBERT A. ANDERSEN HWAN SU YOON 《Molecular ecology》2010,19(19):4328-4338
The global distribution, abundance, and diversity of microscopic freshwater algae demonstrate an ability to overcome significant barriers such as dry land and oceans by exploiting a range of biotic and abiotic colonization vectors. If these vectors are considered unlimited and colonization occurs in proportion to population size, then globally ubiquitous distributions are predicted to arise. This model contrasts with observations that many freshwater microalgal taxa possess true biogeographies. Here, using a concatenated multigene data set, we study the phylogeography of the freshwater heterokont alga Synura petersenii sensu lato. Our results suggest that this Synura morphotaxon contains both cosmopolitan and regionally endemic cryptic species, co‐occurring in some cases, and masked by a common ultrastructural morphology. Phylogenies based on both proteins (seven protein‐coding plastid and mitochondrial genes) and DNA (nine genes including ITS and 18S rDNA) reveal pronounced biogeographic delineations within phylotypes of this cryptic species complex while retaining one clade that is globally distributed. Relaxed molecular clock calculations, constrained by fossil records, suggest that the genus Synura is considerably older than currently proposed. The availability of tectonically relevant geological time (107–108 years) has enabled the development of the observed, complex biogeographic patterns. Our comprehensive analysis of freshwater algal biogeography suggests that neither ubiquity nor endemism wholly explains global patterns of microbial eukaryote distribution and that processes of dispersal remain poorly understood. 相似文献
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植被状况对乔木幼苗物种多样性的影响 总被引:3,自引:0,他引:3
运用灰色关联度分析亚热带常绿阔叶林植被状况对乔木幼苗物种多样性的影响。结果表明,所选取的植被状况参数对乔木幼苗物种多样性有不同的影响,对乔木幼苗物种多样性影响较大的是草本层的Simpson指数、灌木层Simpson指数和灌木层盖度,影响较小的为草本层盖度和灌木层Shannon-Wiener指数。乔木幼苗4个物种多样性指数受植被状况影响的顺序为:Pielou均匀性指数>Shannon-Wiener指数>物种丰富度指数>Simpson指数。草本层、灌木层和乔木层对乔木幼苗的物种多样性有不同的影响,其影响方式也不一样。 相似文献
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Production of laccase activity by nine strains of Chalara paradoxa isolated from olive mill wastewater disposal ponds were studied. Enzyme extracts obtained from cultured broths by adsorption on hydroxyapatite showed a single band of laccase activity on ABTS after polyacrylamide gel electrophoresis (PAGE). They showed small mobility differences, with molecular masses of 67 to 68 kDa. Enzymes from the different strains oxidized a variety of phenolic and non-phenolic substances, and they could be divided into two groups according to their relative activities on substrates. All laccases showed a dual pH dependence of activity, with a maximum in the range of pH 3.0 to 4.5 for ABTS, o-dianisidine and 2,6-dimethoxyphenol, and pH 6.0 (Group 1) or pH 6.5 (Group 2) for syringaldazine and other substrates. Optimal temperatures were in the range of 10 to 28 degrees C for two strains (maximum at 10 degrees C) and 10 to 37 degrees C for the rest. The different enzymes were partially inactivated by heating at 60 degrees C and totally inactivated at 70 degrees C. Laccases were stable in a pH range of 3.0 to 9.0 (except for strain 36A, which was partially inactivated at pH 3.0), but became inactivated at pH 2.0. Altogether these data suggest that Ch. paradoxa strains produce different laccase isoenzymes. 相似文献