A fuzzy coding approach for the analysis of long-term ecological data

• 1 We present an unconventional procedure (fuzzy coding) to structure biological and environmental information, which uses positive scores to describe the affinity of a species for different modalities (i.e. categories) of a given variable. Fuzzy coding is essential for the synthesis of long-term ecological data because it enables analysis of diverse kinds of biological information derived from a variety of sources (e.g. samples, literature).
• 2 A fuzzy coded table can be processed by correspondence analysis. An example using aquatic beetles illustrates the properties of such a fuzzy correspondence analysis. Fuzzy coded tables were used in all articles of this issue to examine relationships between spatial-temporal habitat variability and species traits, which were obtained from a long-term study of the Upper Rhône River, France.
• 3 Fuzzy correspondence analysis can be programmed with the equations given in this paper or can be performed using ADE (Environmental Data Analysis) software that has been adapted to analyse such long-term ecological data. On Macintosh Apple^TM computers, ADE performs simple linear ordination, more recently developed methods (e.g. principal component analysis with respect to instrumental variables, canonical correspondence analysis, co-inertia analysis, local and spatial analyses), and provides a graphical display of results of these and other types of analysis (e.g. biplot, mapping, modelling curves).
• 4 ADE consists of a program library that exploits the potential of the HyperCard^TM interface. ADE in an open system, which offers the user a variety of facilities to create a specific sequence of programs. The mathematical background of ADE is supported by the algebraic model known as ‘duality diagram’.

     

CO2 Assimilation and Partitioning of Carbon in Maize Plants Deprived of Orthophosphate

In order to study the effects of inorganic phosphate (P1) starvationon C₄plants, 3-week-old maize plants (Zea maysL cv. Brulouis)were grown in a growth chamber on a nutrient solution withoutP1 over 22 d During the first 2 weeks, Pi-starved plants grewas well as control plants The Pi concentration in the planttissue decreased rapidly with time, which suggests that normalbiomass production can be maintained at the expense of internalP1 In addition, photosynthetic CO2 assimilation measured 4-6h after dawn was not affected, but the concentration of glucose,sucrose, and starch in leaves was much higher than in the controls¹⁴CO₂ pulse-chase experiments earned out on the ninth day oftreatment showed that ¹⁴CO₂ assimilation was perturbed duringthis initial period, resulting in a larger flow of carbon toboth starch and sucrose At the beginning of the third week ofP1 starvation (15 d after treatment) ¹⁴C incorporation intosucrose stayed high relative to controls but this was not thecase for starch At the end of the third week of P1-deficiency,shoot growth was considerably reduced and fresh weight was onlyone-third of that of the control plants. The P1 concentrationof both the leaf and root tissues was less than 1.0 µmolg^–1 FW compared to 20-25µmol g¹ FW in the controls.Photosynthetic CO₂ assimilation was reduced and the leaf concentrationof sucrose and starch, which had begun to decrease after theend of the second week of P1 limitation, became lower than inthe controls. These results obtained on maize plants show thatphotosynthesis and carbon partitioning between sucrose and starchwere strongly affected by P1 deficiency, similar to C₃ species. Key words: CO₂ assimilation, corn, orthophosphate deficiency, starch, sucrose     

Mechanism of water‐stress induced cavitation in conifers: bordered pit structure and function support the hypothesis of seal capillary‐seeding

Resistance to water‐stress induced cavitation is an important indicator of drought tolerance in woody species and is known to be intimately linked to the anatomy of the xylem. However, the actual mechanical properties of the pit membrane are not well known and the exact mode of air‐seeding by which cavitation occurs is still uncertain. We examined the relationship between cavitation resistance and bordered pit structure and function in 40 coniferous species. Xylem pressure inducing 50% loss of hydraulic conductance (P₅₀, a proxy for cavitation resistance) varied widely among species, from ?2.9 to ?11.3 MPa. The valve effect of the pit membrane, measured as a function of margo flexibility and torus overlap, explained more variation in cavitation‐resistance than simple anatomical traits such as pit membrane, pit aperture or torus size. Highly cavitation resistant species exhibited both a high flexibility of the margo and a large overlap between the torus and the pit aperture, allowing the torus to tightly seal the pit aperture. Our results support the hypothesis of seal capillary‐seeding as the most likely mode of air‐seeding, and suggest that the adhesion of the torus to the pit border may be the main determinant of cavitation resistance in conifers.     

Taxonomic and biological trait differences of stream macroinvertebrate communities between mediterranean and temperate regions: implications for future climatic scenarios

Streams in mediterranean regions have highly seasonal discharge patterns, with predictable torrential floods and severe droughts. In contrast, discharge is less variable in temperate regions and intermittent flow conditions are uncommon. Hydroclimatic models predict that climate change would increase frequency and severity of floods and droughts across Europe, thus increasing the proportion of streams with mediterranean characteristics in actually temperate areas. Correspondingly, understanding actual ecological differences between mediterranean and temperate streams may help to anticipate large‐scale ecological impacts of climate change. Given that large‐scale factors determine local community composition, we hypothesized that climatic differences between mediterranean and temperate regions should affect the taxonomic and biological trait composition in streams. We assembled the abundance of stream macroinvertebrate genera of 265 sites each from the Mediterranean Basin and from temperate Europe and linked these abundances to published information on 61 categories of 11 biological traits reflecting the potential of resilience from and resistance to disturbances. Although regional taxonomic richness was higher in the mediterranean than in the temperate region, local taxonomic richness and diversity did not significantly differ between regions. Local trait richness and diversity were significantly higher in the mediterranean region. Both local taxonomic and trait‐community composition differed between regions, but the former varied much more than the latter, highlighting that climate change could produce large changes in the taxonomic but rather weak changes in the trait composition. The mediterranean region was characterized by macroinvertebrates with higher dispersion and colonization capabilities, suggesting that species loss in the temperate region, by extinction or northward emigration of taxa, would be compensated for by immigration of southern mediterranean taxa. Thus, climate change would likely have stronger implications for the local conservation of taxa than for the trait composition of stream macroinvertebrate communities.     

Experimental shading alters leaf litter breakdown in streams of contrasting riparian canopy cover

1. Headwater stream ecosystems are primarily heterotrophic, with allochthonous organic matter being the dominant energy. However, sunlight indirectly influences ecosystem structure and functioning, affecting microbial and invertebrate consumers and, ultimately, leaf litter breakdown. We tested the effects of artificial shading on litter breakdown rates in an open‐canopy stream (high ambient light) and a closed‐canopy stream (low ambient light). We further examined the responses of invertebrate shredders and aquatic hyphomycetes to shading to disentangle the underlying effects of light availability on litter breakdown. 2. Litter breakdown was substantially slower for both fast‐decomposing (alder, Alnus glutinosa) and slow‐decomposing (beech, Fagus sylvatica) leaf litters in artificially shaded stream reaches relative to control (no artificial shading) reaches, regardless of stream type (open or closed canopy). 3. Shredder densities were higher on A. glutinosa than on F. sylvatica litter, and shading had a greater effect on reducing shredder densities associated with A. glutinosa than those associated with F. sylvatica litter in both stream types. Fungal biomass was also negatively affected by shading. Results suggest that the effects of light availability on litter breakdown rates are mediated by resource quality and consumer density. 4. Results from feeding experiments, where A. glutinosa litter incubated under ambient light or artificial shade was offered to the shredder Gammarus fossarum, suggest that experimental shading and riparian canopy openness influenced litter palatability interactively. Rates of litter consumption by G. fossarum were decreased by experimental shading in the open‐canopy stream only. 5. The results suggest that even small variations in light availability in streams can mediate substantial within‐stream heterogeneity in litter breakdown. This study provides further evidence that changes in riparian vegetation, and thus light availability, influence organic matter processing in heterotrophic stream ecosystems through multiple trophic levels.     

Mites as biological tags of their hosts

Movements and spatial distribution of host populations are expected to shape the genetic structure of their parasite populations. Comparing the genetic patterns of both interacting species may improve our understanding of their evolutionary history. Moreover, genetic analyses of parasites with horizontal transmission may serve as indicators of historical events or current demographic processes that are not apparent in the genetic signature of their hosts. Here, we compared mitochondrial variation in populations of the ectoparasitic mite Spinturnix myoti with the genetic pattern of its host, the Maghrebian bat Myotis punicus in North Africa and in the islands of Corsica and Sardinia. Mite mitochondrial differentiation among populations was correlated with both host mitochondrial and nuclear differentiation, suggesting spatial co‐differentiation of the lineages of the two interacting species. Therefore our results suggest that parasite dispersal is exclusively mediated by host movements, with open water between landmasses as a main barrier for host and parasite dispersal. Surprisingly the unique presence of a continental European mite lineage in Corsica was inconsistent with host phylogeographical history and strongly suggests the former presence of European mouse‐eared bats on this island. Parasites may thus act as biological tags to reveal the presence of their now locally extinct host.     

Kin Competition, the Cost of Inbreeding and the Evolution of Dispersal

Dispersal is often presented as a mechanism to avoid competition among relatives and inbreeding depression. However, the formal analysis of the effects of both these factors on the evolution of dispersal has only been conducted in few studies with strong restrictive assumptions. In this paper, I first derive the evolutionary stable dispersal rate as a function of three parameters: (1) the cost of dispersal, c, (2) the coefficient of relatedness among randomly chosen offspring, R, and (3) the cost of inbreeding, δ. In a second step, relatedness is used as a dynamical variable for the derivation of the evolutionarily stable dispersal rate. Finally, in a third step, relatedness and the cost of inbreeding are assumed to be dynamical variables. This allows to analyse the more realistic situation where dispersal, relatedness and the cost of inbreeding are coevolving simultaneously. Several subcases are considered depending on the genetic determinism (haploid or diploid), the control of the dispersal strategy (parent or offspring control of dispersal) and the plasticity of dispersal with sexes (with or without sex-specific dispersal rates). This analysis clarifies the role of the cost of inbreeding and kin competition on the evolution of dispersal (in particular on the evolution of sex-biased dispersal rates) and leads to quantitative and testable predictions.     

Are patterns in the taxonomic,biological and ecological traits of water beetles congruent in Mediterranean ecosystems?

1. Coleoptera species show considerable diversity in life histories and ecological strategies, which makes possible their wide distribution in freshwater habitats, including highly stressed ones such as saline or temporary waterbodies. Explaining how particular combinations of traits allow species to occupy distinctive habitats is a central question in ecology. 2. A total of 212 sites, sampled over a wide range of inland aquatic habitats in the south‐eastern Iberian Peninsula, yielded 272 species belonging to 68 genera and 11 families. The affinities of genera for 11 biological and 11 ecological traits, gathered from literature and the authors’ own expertise, were used to assess the degree of congruence between taxonomic, biological and ecological traits. 3. Taxonomic richness was significantly related to the number of both biological and ecological trait categories, with the richest families also showing the highest functional and ecological diversity. A fuzzy correspondence analysis performed on the abundance‐weighed array of biological traits separated genera according to categories of diet, feeding habits, respiration, reproduction and locomotion. A similar analysis of ecological traits revealed that preferences related to longitudinal distribution (headwater to mouth), local habitat and current velocity best discriminated genera. At the family level, there was a distinctive functional grouping of genera based on biological traits. Only Elmidae showed noticeable homogeneity across genera for both biological and ecological traits. 4. Co‐inertia analysis demonstrated a significant match between biological and ecological traits (Rv‐correlation = 0.35, P < 0.001). Elmidae genera displayed the highest concordance, whereas Hydraenidae demonstrated the lowest. 5. These results indicate that the predominance of habitat filtering processes in headwater streams yields biological trait conservatism (as shown by Elmidae genera), as well as trait convergence for some specific traits (for instance, respiration) among certain Dytiscidae genera and other typical rheophilic taxa, whereas other biotic factors, such as competition among species, appear more prominent in less stressed habitats. Further knowledge of traits, especially regarding physiological capabilities, is needed to better understand water beetle life history strategies.