Stable isotope analysis indicates microalgae as the predominant food source of fauna in a coastal forest stream,south‐east Brazil

Abstract: Stable isotope studies of food webs in floodplains, large rivers, mangroves, and seagrasses have shown that, although a large proportion of the biomass may come from higher plants, microalgae provide a disproportionate amount of carbon assimilated by metazoan consumers. Evidence is building that this may also be the case for streams, especially those in the tropics. At the level of individual consumer species we also see that the apparent diet may not be reflected in the carbon assimilated. Tropical streams commonly have omnivore‐detritivore species that potentially show this phenomenon. We tested these concepts in four moderately shaded sites in a stream in well‐preserved Atlantic rainforest at Ilha Grande, Rio de Janeiro. We sampled aquatic insects, shrimps and fish as well as potential terrestrial and aquatic primary food sources. Carbon stocks from terrestrial sources predominated over carbon of algal origin (>99% of total). The primary sources of carbon showed distinctly different isotopic signatures: terrestrial sources had δ¹³C values close to ?30‰, microalgae were ?20‰ and macroalgae were ?25‰. All fauna had δ¹³C values consistent with a carbon source derived from microalgae. Baetid mayflies and atyid shrimps exert a strong grazing pressure on periphyton and organic sediments but appear to assimilate predominantly microalgae. The palaemonid shrimp Macrobrachium olfersi also ingests large amounts of detritus of terrestrial origin, but apparently assimilates animal prey with algal δ¹³C signatures. These results support the growing view that tropical stream food chains are primarily algal based.     

Volunteer surveys as a means of inferring trends in garden mammal populations

• 1 Habitats associated with humans, and gardens in particular, may prove to be important for populations of certain mammal species. However, means for measuring change in these populations are lacking.
• 2 This paper uses power analyses to examine the potential for mammal observation data, gathered through an extensive volunteer‐based survey of garden birds, to provide measures of population change within garden habitats at both national and regional levels.
• 3 Analyses show that this survey protocol has sufficient power to detect a decline in presence of between 5% and 40% at the national level for 20 of the 24 species included in this study. These results demonstrate that data from volunteer surveys allow the annual monitoring of garden use by a range of mammal species within Britain, and highlight the wider potential of such schemes worldwide.

     

A scolopocryptopid centipede (Chilopoda: Scolopendromorpha) from Mexican amber: synchrotron microtomography and phylogenetic placement using a combined morphological and molecular data set

The first scolopocryptopid centipede known from the fossil record is a specimen of the subfamily Scolopocryptopinae in Miocene amber from Chiapas, southern Mexico. It is described here as Scolopocryptops simojovelensis sp. nov. , displaying a distinct combination of morphological characters compared to extant congeners. Anatomical details of the fossil specimen were acquired by non‐invasive 3D synchrotron microtomography using X‐ray phase contrast. The phylogenetic position of the new species is inferred based on a combination of morphological data with sequences for six genes (nuclear 18S and 28S rRNA, nuclear protein‐coding histone H3, and mitochondrial 12S rRNA, 16S rRNA, and protein‐coding cytochrome c oxidase subunit I) for extant Scolopendromorpha. The data set includes eight extant species of Scolopocryptops and Dinocryptops from North America, east Asia, and the Pacific, rooted with novel sequence data for other blind scolopendromorphs. The molecular and combined data sets, analysed in a parsimony/direct optimization framework, identified a stable pattern of two main clades within Scolopocryptopinae. North American and Asian species of Scolopocryptops are united as a clade supported by both morphological and molecular characters. Its sister group is a Neotropical clade in which the type species of Dinocryptops is nested within a paraphyletic assemblage of Scolopocryptops species; Dinocryptops is placed in synonymy with Scolopocryptops. The strength of support for the relationships of extant taxa from the molecular data allow the Chiapas fossil to be assigned with precision, despite ambiguity in the morphological data; the fossil is resolved as sister species to the extant Laurasian clade. © 2012 The Linnean Society of London, Zoological Journal of the Linnean Society, 2012, 166 , 768–786.     

Bird community composition across an Andean tree‐line ecotone

Few studies have found strong evidence to suggest that ecotones promote species richness and diversity. In this study we examine the responses of a high‐Andean bird community to changes in vegetation and topographical characteristics across an Andean tree‐line ecotone and adjacent cloud forest and puna grassland vegetation in southern Peru. Over a 6‐month period, birds and vegetation were surveyed using a 100 m fixed‐width Distance Sampling point count method. Vegetation analyses revealed that the tree‐line ecotone represented a distinctive high‐Andean vegetation community that was easily differentiated from the adjacent cloud forest and puna grassland based on changes in tree‐size characteristics and vegetation cover. Bird community composition was strongly seasonal and influenced by a pool of bird species from a wider elevational gradient. There were also clear differences in bird community measures between tree‐line vegetation, cloud forest and puna grassland with species turnover (β‐diversity) most pronounced at the tree‐line. Canonical Correspondence Analysis revealed that the majority of the 81 bird species were associated with tree‐line vegetation. Categorizing patterns of relative abundance of the 42 most common species revealed that the tree‐line ecotone was composed primarily of cloud forest specialists and habitat generalists, with very few species from the puna grassland. Only two species, Thlypopsis ruficeps and Anairetes parulus, both widespread Andean species more typical of montane woodland vegetation edges, were categorized as ecotone specialists. However, our findings were influenced by significant differences in species detectability between all three vegetation communities. Our study highlights the importance of examining ecotones at an appropriate spatial and temporal scale. Selecting a suitable distance between sampling points based on the detection probabilities of the target bird species is essential to obtain an unbiased picture of how ecotones influence avian richness and diversity.     

Spatio-temporal population genetics of the Danish pine marten (Martes martes)

A spatio-temporal study of genetic variation in the Danish pine marten ( Martes martes ) populations from the Jutland peninsula and from the island of Sealand was performed using 11 microsatellite markers. Samples obtained from 1892 to 2003 were subdivided into historical (prior to 1970) and recent (from 1970) groups. As compared with the historical samples, there was a significant loss of genetic variation in the recent Jutland population, but not in Sealand. Effective population sizes were estimated using Bayesian-based software (TMVP). Historical effective population sizes were 5897 (90% highest probability density, HPD, limits: 1502–6849) in Jutland and 1300 (90% HPD limits: 224–5929) in Sealand, whereas recent effective population sizes were 14.7 (90% HPD limits: 10.9–23.5) in Jutland and 802 (90% HPD limits: 51.8–5510) in Sealand. Significant genetic differentiation ( F _ST) was found between the two historical samples, between the two recent samples, and between the historical and the recent sample in Jutland; whereas the F _ST value between the historical and the recent sample in Sealand was not significant. The significant genetic differentiation between the historical and the recent samples indicates changes in the genetic compositions over time, and the higher F _ST values between the two recent samples, as compared with the two historical samples, indicates that the populations in Sealand and Jutland have drifted apart within a short time span. No deviation from Hardy–Weinberg equilibrium was found within populations, indicating no further substructuring.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 457–464.     

Historical DNA from museum type specimens clarifies diversity of Asian leaf turtles (Cyclemys)

Species boundaries in Asian leaf turtles of the genus Cyclemys are difficult to define on the basis of morphology, primarily because many populations exhibit considerable ontogenetic variation in shell and head coloration. Two recent molecular phylogenetic hypotheses of Cyclemys species relationships, based largely on market and pet-trade samples of uncertain provenance, were highly incongruent. We used historical DNA methods to sequence fragments of the mitochondrial cytochrome  b gene from eight type specimens of Cyclemys (including one collected by Alfred Russel Wallace), and phylogenetically placed these type sequences into the context of published cytochrome  b variation. Our phylogenetic hypothesis supports the recognition of four named species ( Cyclemys atripons , Cyclemys dentata , Cyclemys oldhamii , and C. pulchristriata ), as well as a fifth species of unknown geographical provenance obtained from the Hong Kong pet trade. The type sequences show that previous molecular phylogenetic studies were hampered by misidentifications, supporting the notion that Cyclemys of unknown provenance are not reliably identified to species solely on the basis of morphology.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 94 , 131–141.     

Correlates of extinction risk of birds from two Indonesian islands

Size of distributional range, position in the range, body size and diet are some of the ecological traits that may correlate with local abundance. Evolutionary phenomena such as taxon cycles, acting over much greater time periods, may also influence abundance and promote species extinction. This paper assesses which of a wide range of ecological and historic traits best predict the variation in abundance of tropical forest birds on Sumba and Buru islands in Wallacea (Indonesia). In addition we seek to determine which traits predict species' ability to adapt to secondary or logged forest. The most important correlates of both abundance and ability to transfer were those related to the evolutionary history of the species within the Wallacean Archipelago and not the traits that were more directly related to species ecology. These relationships are maintained when allowance is made for phylogenetic relationships. Our interpretation of the results is that recent colonists to an island are initially rare in the indigenous forest habitat but concomitant with an adaptation to local conditions they gradually become more abundant and taxonomically distinct from other populations of the same species. These results apparently contradict the taxon cycle hypothesis but this may be a result of our focus on indigenous forest habitats rather than on a wider range dominated by anthropogenic ones.