Phylogeography and population structure of European sea bass in the north‐east Atlantic

The European sea bass Dicentrarchus labrax represents a historically and commercially valuable species in the north‐east Atlantic, although the demographic history and the patterns of geographical structure of the species in the north‐east Atlantic remain poorly understood. The present study investigates the population genetic structure of sea bass in north‐western European waters, employing different genetic markers [a portion of the mitochondrial (mt)DNA control region and 13 nuclear microsatellites] aiming to unravel demographic history and population connectivity. The results obtained show a previously unrecognized pattern of population divergence at mtDNA, with three strikingly different lineages identified. Extant sea bass populations, including the Mediterranean lineage, derive from an Atlantic ancestor. A much increased number of nuclear microsatellite loci (comparatively to previous studies) still fail to detect biologically meaningful patterns of spatial genetic structuring in the North Atlantic. Past Pleistocene glacial and interglacial events and some degree of female philopatry might be at the basis of the current geographical separation of the Atlantic lineages that has been identified. Signatures of sudden demographic expansions are more evident in the most recent mitochondrial lineages, and their slight, yet significant, geographical segregation leads to the hypothesis that present‐day spawning grounds for European sea bass may still to some extent be linked to their most recent glacial refugia. © 2011 The Linnean Society of London, Biological Journal of the Linnean Society, 2011, 104 , 364–377.     

Functional morphology of vermetid feeding-tubes

Vermetidae are a small family of warm-water sessile gastropods capable of building upright tubes (feeding-tubes) to take advantage of the water flow. Laboratory and field experiments carried out on some Mediterranean species ( Vermetus triquetrus, Vermetus granulatus and Serpulorbis arenaria ) suggest that these structures function as exploratory tubes built not only to receive a better water flow, but mainly to avoid obstacles. In fact, vermetids experimentally exposed in situ to different hydrodynamic conditions do not produce them, but do so in the presence of an obstacle, such as thalli during the massive spring algal growth. This strategy allows them to compete for a virtual space, not directly occupied by the vermetid itself but necessary to spread its mucous net. This interpretation may improve the inference of paleo-environmental events from shell morphology. When building a feeding-tube, vermetids first cut off a portion of the shell on the side towards which they prepare to turn, using their radula, and then produce a new tube formed by short segments, at different angles, till they have reached the desired direction. This process is confirmed by the presence of scars on the shell, composed by a succession of lamellae. The regular distribution of these scars on fossil Petaloconchus intortus , which lived in soft substrates, may be interpreted as a response to periodical anoxic crises or an increase in the sedimentation rates. Their great morphological plasticity makes vermetids close to colonial or modular animals. Thanks to their capability of expressing more than one growth-form, and of re-moulding their shell, they successfully compete for substrate space and are key-stone species in fringe habitats.     

Foraminifer communities and environmental change in marginal marine sequences (Pliocene,Tuscany, Italy)

Fossil abundance data on foraminifer communities were collected in marginal marine sediments of the Pliocene Valdelsa succession, in Tuscany, Italy. This succession is organized in a hierarchy of elementary and composite depositional sequences. Multivariate techniques allowed to analyse the dataset and reconstruct gradients in species distributions. Species‐level data available on modern environmental distributions were used to reconstruct Pliocene environmental gradients and to infer absolute palaeodepths and palaeosalinities. Estimates were then compared with the sequence‐stratigraphic interpretation to check for consistency. The high‐resolution stratigraphic framework allowed us to test the stability of foraminifer communities against ecological variations related to high‐frequency glacio‐eustatic cycles. The results confirm that fossil distributions of foraminifer species can be used as a fine tool to detect environmental change and that multivariate techniques allow their interpretation in terms of absolute variations of controlling parameters. Salinity is the main contributor to the sum of depth‐related factors that regulate foraminifer distributions in coastal facies. In the same setting, nutrient levels and the presence of a sea grass cover are responsible for secondary changes in shallow‐water distributions. Below the wave base, however, depth‐related parameters other than salinity explain the largest variations. This study indicates that foraminifer communities are random associations of species that respond individualistically to environmental change.     

pH-, temperature- and ion-dependent oligomerization of Sulfolobus solfataricus recombinant amidase: a study with site-specific mutants

Recombinant amidase from Sulfolobus solfataricus occurred as a dimer of 110 kDa comprising identical subunits. Only dimers were present at pHs above 7.0, but with decreasing pH, dimers associated into octamers, with complete oligomerization occurring at pH 3.0. Oligomerization showed reversible temperature-dependence, with octamer formation increasing with temperature from 36 °C to between 70 and 80° C. Increasing salt concentrations, favored dissociation of the octamers. Among the three investigated factors affecting the dimer–octamer equilibrium, the most important was pH. Among four mutants obtained by site-specific mutagenesis and selection for pH and temperature sensitivity, the T319I and D487N mutant amidases, like that of the native Sulfolobus solfataricus, responded to changes in pH and temperature with a conformational change affecting the dimer–octamer equilibrium. The Y41C and L34P mutant amidases were unaffected by pH and temperature, remaining always in the dimeric state. The differences among mutants in protein conformation must be related to the position of the introduced mutation. Although the L34P and Y41C mutations are located in the helical region 33–48 (LLKLQLESYERLDSLP), which is close to the amino-terminal segment of the protein, the T319I mutation is located in a strand on the surface of the protein, which is far from, and opposite to, the amino-terminal segment. The D487N mutation is located in the center of the protein, far distant from the 33–48 segment. These observations suggest that the segment of the protein closest to the amino-terminus plays a key role in the association of dimers into octamers.     

Analysis of Pneumocystis carinii Cyst Wall. II. Sugar Composition

ABSTRACT. Pneumocystis carinii cysts are capable of resisting host defenses and antimicrobial drugs and are therefore thought to be responsible for relapses of P. carinii pneumonia in AIDS and other immunocompromised patients. The interaction of P. carinii with its host, and other P. carinii , might be mediated by molecules which form the outer surfaces of this organism. Carbohydrates are known to play many roles in cell-cell adhesion, and have been detected on the surface of P. carinii by lectin labeling experiments. In this study P. carinii cyst wall material was obtained from Zymolyase treatment. Alditol acetate derivatives of neutral and amino sugars or trimethylsilyl derivatives of methyl glycosides were prepared from the monosaccharides released from the sample by acid hydrolysis. Analyses were done by a combination of gas chromatography and mass spectrometry. Glucose was found to be the major sugar constituent. Mannose and galactose were present in equal ratios. A lesser amount of N-acetyl-D-glucosamine, and trace amounts of ribose and sialic acid were present in the cyst wall samples analyzed. These sugars may mediate P. carinii -host interaction and play an important protective role by creating a permeability barrier around the cyst.     

Survival in the Rockies of an endangered hybrid swarm from diverged caribou (Rangifer tarandus) lineages

In North America, caribou ( Rangifer tarandus ) experienced diversification in separate refugia before the last glacial maximum. Geographical isolation produced the barren-ground caribou ( Rangifer tarandus groenlandicus ) with its distinctive migratory habits, and the woodland caribou ( Rangifer tarandus caribou ), which has sedentary behaviour and is now in danger of extinction. Herein we report on the phylogenetics, population structure, and migratory habits of caribou in the Canadian Rockies, utilizing molecular and spatial data for 223 individuals. Mitochondrial DNA analyses show the occurrence of two highly diverged lineages; the Beringian–Eurasian and North American lineages, while microsatellite data reveal that present-day Rockies' caribou populations have resulted from interbreeding between these diverged lineages. An ice-free corridor at the end of the last glaciation likely allowed, for the first time, for barren-ground caribou to migrate from the North and overlap with woodland caribou expanding from the South. The lack of correlation between nuclear and mitochondrial data may indicate that different environmental forces, which might also include human-caused habitat loss and fragmentation, are currently reshaping the population structure of this postglacial hybrid swarm. Furthermore, spatial ecological data show evidence of pronounced migratory behaviour within the study area, and suggest that the probability of being migratory may be higher in individual caribou carrying a Beringian–Eurasian haplotype which is mainly associated with the barren-ground subspecies. Overall, our analyses reveal an intriguing example of postglacial mixing of diverged lineages. In a landscape that is changing due to climatic and human-mediated factors, an understanding of these dynamics, both past and present, is essential for management and conservation of these populations.     

MINERAL COMPOSITION OF NUDIBRANCH SPICULES

Doridacean opisthobranchs have calcium carbonate spicules intheir mantle, foot, gills and rhinophores, which are generallyfusiform or spheroid in shape. There is surprising little knowledgeof their structure, and little information is available on theirmineral composition, generally considered to be calcite. Inorder to study their compositional variability and the possiblerole of environmental temperature in their calcification, thespicules of several doridaceans, collected at different latitudes,were analysed using a diffractometer (XRD) and a SEM microscopeequippedwith an EDS spectrometer. The study yielded the followingresults, concerning the minero-chemical composition of the spicules: 1) the fusiform spicules are mainly composed of calcite (CaCO₃)and brucite (Mg(OH)₂), with a small percentage of fluorite (CaF₂).The smaller spherules are almost pure calcite; 2) the mineral composition of fusiform spicules of species collectedat different latitudes showed inter-and intra-individual differences,but the Ca/Mg ratio does not seem to vary according to the environmentaltemperature. In fact, this ratio reflects the volume percentof calcite and brucite in a crystalline aggregate, and consequently,temperature has a poor influence on spicule composition. Onthe other hand, differences between foot and mantle, not onlywithin the same species but also in the same specimen, suggestthat the animal itself can influence the ratio ofcalcite andbrucite nucleation. In this case, the different pH in mantleand foot tissue could induce a different up-take and use ofcalcium and magnesium; 3) the presence of pure calcite spherules suggests that theycould be related to variations of the ion concentration in theskin caused by pH variations due to the dermal gland activityor, more simply, could be considered as a calcium reservoirand source for the production of the slender spicules. (Received 25 August 1994; accepted 28 December 1994)     

Pleurotomaria DeFrance, 1826 (Gastropoda,Mollusca) from the Lower Bajocian (Middle Jurassic) sediments of Luxembourg,with considerations on its systematics,evolution and palaeobiogeographical history

Abstract: Pleurotomaria species from lower Bajocian (Middle Jurassic) sediments of south‐western Luxembourg housed in the National Natural History Museum of Luxembourg are described. Seven species are recognized, one of which is new, Pleurotomaria faberi sp. nov. A more detailed definition of the diagnostic characters of the genus is proposed and the morphological continuity between Talantodiscus and Pleurotomaria is demonstrated, suggesting that the former cannot be considered as a distinct taxon. The palaeoecology, evolution and palaeobiogeographical history of Pleurotomaria are outlined. Pleurotomaria presumably first appeared in late Middle Triassic of New Zealand where it underwent a relative diversification up to the Hettangian (Early Jurassic). From early Hettangian, most of its evolutionary history took place in Europe and western Tethys. In the European epicontinental seas, Pleurotomaria experienced two important radiations. The first occurred in the Early Jurassic, with a peak in the late Pliensbachian, and was marked by an expansion of the distribution to the central part of western Tethys. After a collapse in species diversity, probably related to the early Toarcian anoxic event, a second radiation occurred. This culminated in the early Bajocian and was mainly confined in a region encompassing southern England, Paris Basin and southern Germany. Low‐spired species, formerly attributed to Talantodiscus, probably originated independently and iteratively during the history of Pleurotomaria. The facies and associated benthic faunas suggest that Pleurotomaria probably lived on shallow soft bottoms composed of mixed calcareous–siliciclastic sediments. The two main Early Jurassic and early Middle Jurassic radiations of the genus took place in these environments. Records of the genus in Jurassic carbonate platform deposits are very few and concern mainly post‐Bajocian species.