Effect of stand age on greenhouse gas fluxes from a Sitka spruce [Picea sitchensis (Bong.) Carr.] chronosequence on a peaty gley soil

The influence of forest stand age in a Picea sitchensis plantation on (1) soil fluxes of three greenhouse gases (GHGs – CO₂, CH₄ and N₂O) and (2) overall net ecosystem global warming potential (GWP), was investigated in a 2‐year study. The objective was to isolate the effect of forest stand age on soil edaphic characteristics (temperature, water table and volumetric moisture) and the consequent influence of these characteristics on the GHG fluxes. Fluxes were measured in a chronosequence in Harwood, England, with sites comprising 30‐ and 20‐year‐old second rotation forest and a site clearfelled (CF) some 18 months before measurement. Adjoining unforested grassland (UN) acted as a control. Comparisons were made between flux data, soil temperature and moisture data and, at the 30‐year‐old and CF sites, eddy covariance data for net ecosystem carbon (C) exchange (NEE). The main findings were: firstly, integrated CO₂ efflux was the dominant influence on the GHG budget, contributing 93–94% of the total GHG flux across the chronosequence compared with 6–7% from CH₄ and N₂O combined. Secondly, there were clear links between the trends in edaphic factors as the forest matured, or after clearfelling, and the emission of GHGs. In the chronosequence sites, annual fluxes of CO₂ were lower at the 20‐year‐old (20y) site than at the 30‐year‐old (30y) and CF sites, with soil temperature the dominant control. CH₄ efflux was highest at the CF site, with peak flux 491±54.5 μg m⁻² h⁻¹ and maximum annual flux 18.0±1.1 kg CH₄ ha⁻¹ yr⁻¹. No consistent uptake of CH₄ was noted at any site. A linear relationship was found between log CH₄ flux and the closeness of the water table to the soil surface across all sites. N₂O efflux was highest in the 30y site, reaching 108±38.3 μg N₂O‐N m⁻² h⁻¹ (171 μg N₂O m⁻² h⁻¹) in midsummer and a maximum annual flux of 4.7±1.2 kg N₂O ha⁻¹ yr⁻¹ in 2001. Automatic chamber data showed a positive exponential relationship between N₂O flux and soil temperature at this site. The relationship between N₂O emission and soil volumetric moisture indicated an optimum moisture content for N₂O flux of 40–50% by volume. The relationship between C : N ratio data and integrated N₂O flux was consistent with a pattern previously noted across temperate and boreal forest soils.     

Plasticity of opsin gene expression in cichlids from Lake Malawi

Sensory systems play crucial roles in survival and reproduction. Therefore, sensory plasticity has important evolutionary implications. In this study, we examined retinal plasticity in five species of cichlid fish from Lake Malawi. We compared the cone opsin expression profiles of wild‐caught fish to lab‐reared F₁ that had been raised in a UV minus, reduced intensity light environment. All of the opsin genes that were expressed in wild‐caught fish were also expressed in lab‐reared individuals. However, we found statistically significant differences in relative opsin expression among all five species. The most consistent difference was in the SWS2B (violet) opsin, which was always expressed at higher levels in lab‐reared individuals. Estimates of visual pigment quantum catch suggest that this change in expression would increase retinal sensitivity in the light environment of the lab. We also found that the magnitude of plasticity varied across species. These findings have important implications for understanding the genetic regulation of opsin expression and raise many interesting questions about how the cichlid visual system develops. They also suggest that sensory plasticity may have facilitated the ecological diversification of cichlids in Lake Malawi.     

Losing the desire: selection can promote obligate asexuality

Whilst parthenogenesis has evolved multiple times from sexual invertebrate and vertebrate lineages, the drivers and consequences of the sex-asex transition remain mostly uncertain. A model by Stouthamer et al. recently published in BMC Evolutionary Biology shows a pathway by which obligate asexuality could be selected for following endosymbiont infection.     

Survival of Colonizing Wolves in the Northern Rocky Mountains of the United States, 1982–2004

Abstract: After roughly a 60-year absence, wolves (Canis lupus) immigrated (1979) and were reintroduced (1995-1996) into the northern Rocky Mountains (NRM), USA, where wolves are protected under the Endangered Species Act. The wolf recovery goal is to restore an equitably distributed metapopulation of ≥30 breeding pairs and 300 wolves in Montana, Idaho, and Wyoming, while minimizing damage to livestock; ultimately, the objective is to establish state-managed conservation programs for wolf populations in NRM. Previously, wolves were eradicated from the NRM because of excessive human killing. We used Andersen–Gill hazard models to assess biological, habitat, and anthropogenic factors contributing to current wolf mortality risk and whether federal protection was adequate to provide acceptably low hazards. We radiocollared 711 wolves in Idaho, Montana, and Wyoming (e.g., NRM region of the United States) from 1982 to 2004 and recorded 363 mortalities. Overall, annual survival rate of wolves in the recovery areas was 0.750 (95% CI = 0.728-0.772), which is generally considered adequate for wolf population sustainability and thereby allowed the NRM wolf population to increase. Contrary to our prediction, wolf mortality risk was higher in the northwest Montana (NWMT) recovery area, likely due to less abundant public land being secure wolf habitat compared to other recovery areas. In contrast, lower hazards in the Greater Yellowstone Area (GYA) and central Idaho (CID) likely were due to larger core areas that offered stronger wolf protection. We also found that wolves collared for damage management purposes (targeted sample) had substantially lower survival than those collared for monitoring purposes (representative sample) because most mortality was due to human factors (e.g., illegal take, control). This difference in survival underscores the importance of human-caused mortality in this recovering NRM population. Other factors contributing to increased mortality risk were pup and yearling age class, or dispersing status, which was related to younger age cohorts. When we included habitat variables in our analysis, we found that wolves having abundant agricultural and private land as well as livestock in their territory had higher mortality risk. Wolf survival was higher in areas with increased wolf density, implying that secure core habitat, particularly in GYA and CID, is important for wolf protection. We failed to detect changes in wolf hazards according to either gender or season. Maintaining wolves in NWMT will require greater attention to human harvest, conflict resolution, and illegal mortality than in either CID or GYA; however, if human access increases in the future in either of the latter 2 areas hazards to wolves also may increase. Indeed, because overall suitable habitat is more fragmented and the NRM has higher human access than many places where wolves roam freely and are subject to harvest (e.g., Canada and AK), monitoring of wolf vital rates, along with concomitant conservation and management strategies directed at wolves, their habitat, and humans, will be important for ensuring long-term viability of wolves in the region.     

Community Structure of Wetland Birds During Spring Migration Through the Rainwater Basin

Abstract: Staging areas and migratory stopovers of wetland birds have the potential to function as geographic bottlenecks; entire populations within a flyway may be affected by the quality and quantity of available wetland habitat at stopover sites. Although approximately 90% of playa wetlands in the Rainwater Basin (RWB) region of south-central Nebraska, USA, have been destroyed, the area still provides essential stopover habitat for >10 million waterfowl each spring. We evaluated community patterns and species associations to assess importance of assembly rules in structuring wetland bird communities during migration and to better facilitate multispecies conservation and management strategies. We surveyed 36–40 playas twice weekly in the RWB and observed approximately 2.6 million individual migratory wetland birds representing 72 species during 3 spring migrations 2002–2004. We evaluated spatial and temporal species co-occurrence patterns of geese, dabbling ducks, diving ducks, and shorebirds using null model analysis. Goose species co-occurrence scores did not differ from random in any year of the study, suggesting that goose species frequently use the same habitats during migration. Co-occurrence patterns among dabbling ducks were not different than expected by chance in any year; however, when we evaluated co-occurrence at a weekly scale, dabbling ducks co-occurred less often than expected during weeks of peak migration (high abundance), indicating that dabbling duck species spatially segregated at high densities. Diving duck co-occurrence patterns did not differ from random in any year, suggesting that diving duck species used the same habitats during migration. Shorebird species co-occurred less often than expected in 2002 and 2004, and during weeks of high shorebird abundance, indicating that shorebird communities were distinctly structured during those times. Most association values among lesser snow geese (Chen caerulescens) and dabbling duck species were positive, indicating dabbling ducks did not avoid wetlands with snow geese, a concern for waterfowl managers. However, we frequently observed snow geese and dabbling ducks using different microhabitats within a wetland, which indicate species associations and co-occurrence patterns may have occurred at a finer spatial scale than we measured. This approach of co-occurrence analysis will allow wildlife managers charged with multispecies management at migration stopover sites to make informed conservation and management decisions based on community structure rather than historic single-species approaches.     

Linkage disequilibrium and natural selection for mimicry in the Batesian mimic Hypolimnas misippus (L.) (Lepidoptera: Nymphalidae) in the Afrotropics

On two occasions, on opposite sides of the African continent (Cape Coast, Ghana, and Dar es Salaam, Tanzania), high adult population densities in the polymorphic butterfly Hypolimnas misippus (a presumed mimic of Danaus chrysippus) were followed by linkage disequilibrium in combinations of fore‐ and hindwing colour patterns. On both occasions, disequilibrium was caused by significant changes in morph frequencies favouring rarer and more mimetic forms. Recaptures were too few for analysis at Dar, although the changes there took place within a single generation and must have been the result of differential survival. Recapture rate data and survival rate estimates at Cape Coast support the hypothesis that selective predation was responsible, as does the observation of synchronous linkage disequilibrium at Dar in the model D. chrysippus, indicating parasitic mimicry. There was clear selection for the perfection of mimicry for forewings at Dar and for hindwings at Cape Coast. Disequilibrium is also reported for two other sites, Legon (Ghana) and Boksburg (South Africa) and, in all four sites, it was associated with an increase in the most mimetic forms. New chemical evidence is presented to support the contention that D. chrysippus is a defended model. Although all the evidence leads to the conclusion that H. misippus is a Batesian mimic of D. chrysippus, many questions remain, particularly with regard to the identity of predators, the episodic nature of selective predation events, and their apparent lack of lasting and significant impact on overall gene frequencies. We conclude that H. misippus presents both challenges and opportunities for studies on mimicry, and we suggest that linkage disequilibrium can be a useful generic indicator for Gestalt predation on polymorphic prey. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 100 , 180–194.     

Invalidation of Hyperamoeba by Transferring its Species to Other Genera of Myxogastria

ABSTRACT. The genus Hyperamoeba Alexeieff, 1923 was established to accommodate an aerobic amoeba exhibiting three life stages—amoeba, flagellate, and cyst. As more species/strains were isolated, it became increasingly evident from small subunit (SSU) gene phylogenies and ultrastructure that Hyperamoeba is polyphyletic and its species occupy different positions within the class Myxogastria. To pinpoint Hyperamoeba strains within other myxogastrid genera we aligned numerous myxogastrid sequences: whole small subunit ribosomal (SSU or 18S rRNA) gene for 50 dark‐spored (i.e. Stemonitida and Physarida) Myxogastria (including a new “Hyperamoeba”/Didymium sequence) and a ～400‐bp SSU fragment for 147 isolates assigned to 10 genera of the order Physarida. Phylogenetic analyses show unambiguously that the type species Hyperamoeba flagellata is a Physarum (Physarum flagellatum comb. nov.) as it nests among other Physarum species as robust sister to Physarum didermoides. Our trees also allow the following allocations: five Hyperamoeba strains to the genus Stemonitis; Hyperamoeba dachnaya, Pseudodidymium cryptomastigophorum, and three other Hyperamoeba strains to the genus Didymium; and two further Hyperamoeba strains to the family Physaridae. We therefore abandon the polyphyletic and redundant genus Hyperamoeba. We discuss the implications for the ecology and evolution of Myxogastria, whose amoeboflagellates are more widespread than previous inventories supposed, being now found in freshwater and even marine environments.     

The bee‐killing flies,genus Melaloncha Brues (Diptera: Phoridae): a combined molecular and morphological phylogeny

The phylogeny of the bee‐killing flies, genus Melaloncha Brues (Diptera: Phoridae) is analysed using six genes –cytochrome oxidase I, 16S ribosomal DNA, 12S ribosomal DNA, NADH1 dehydrogenase, 28S ribosomal DNA and CAD– plus 47 morphological characters. A total of 91 specimens, including eight out‐groups and 83 Melaloncha (representing 70 species) were included in the analyses. Parsimony analysis of the combined data set produced a single most parsimonious tree with varied Bremer and bootstrap support of interior nodes. Bayesian analysis of molecules only and of morphology + molecules produced trees largely in agreement with parsimony results, although with a few differences. Supported groups included subfamily Metopininae, genus Melaloncha, and subgenera Melaloncha s.s. and Melaloncha (Udamochiras) Enderlein. Within the subgenera, the previously recognized Melaloncha furcata, Melaloncha cingulata, Melaloncha ungulata and Melaloncha stylata groups were recovered, as well as some new groupings. The M. furcata group was placed as the sister group of other Melaloncha s.s., which is consistent with known host‐attacking behaviour.     

Herbivory patterns in mature sugar maple: variation with vertical canopy strata and tree ontogeny

1. Although leaf morphology and chemistry show profound changes as trees age, the consequences of such changes to herbivory have received little attention, particularly late in the ontogeny of canopy trees. 2. Using a mobile aerial lift for canopy access, patterns of leaf damage were evaluated in canopy‐dominant mature sugar maple (Acer saccharum Marsh) trees ranging from ～20 to 70 cm in diameter, corresponding to an age range of ～40–180 years. 3. Herbivore damage patterns varied in relation to both vertical canopy position (among upper‐, mid‐, and lower‐canopy positions) and with tree size. Damage types attributable to herbivores active on leaf surfaces, including leaf skeletonizers and leaf cutters (both principally Lepidoptera), and leaf stippling inducers (Hemiptera) showed decreases with tree size, and with increasing height in the canopy. In contrast, leaf damage from the most abundant gall‐forming arthropod in the system, the eriophyid mite Vasates aceriscrumena, increased markedly with tree size. 4. The results indicate that herbivory patterns vary with both canopy stratum and with tree size in sugar maple, and that the relative strength of vertical stratification and tree ontogeny effects are similar in magnitude. The predominant patterns are of a decrease in herbivory with increasing height in the canopy and with tree size, but certain galling arthropods exhibit the reverse trends.