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181.
DNA-based techniques have proven useful for defining trophic links in a variety of ecosystems and recently developed sequencing technologies provide new opportunities for dietary studies. We investigated the diet of Australian fur seals ( Arctocephalus pusillus doriferus ) by pyrosequencing prey DNA from faeces collected at three breeding colonies across the seals' range. DNA from 270 faecal samples was amplified with four polymerase chain reaction primer sets and a blocking primer was used to limit amplification of fur seal DNA. Pooled amplicons from each colony were sequenced using the Roche GS-FLX platform, generating > 20 000 sequences. Software was developed to sort and group similar sequences. A total of 54 bony fish, 4 cartilaginous fish and 4 cephalopods were identified based on the most taxonomically informative amplicons sequenced (mitochondrial 16S). The prevalence of sequences from redbait ( Emmelichthys nitidus ) and jack mackerel ( Trachurus declivis ) confirm the importance of these species in the seals' diet. A third fish species, blue mackerel ( Scomber australasicus ), may be a more important prey species than previously recognised. There were major differences in the proportions of prey DNA recovered in faeces from different colonies, probably reflecting differences in prey availability. Parallel hard-part analysis identified largely the same main prey species as did the DNA-based technique, but with lower species diversity and no remains from cartilaginous prey. The pyrosequencing approach presented significantly expands the capabilities of DNA-based methods of dietary analysis and is suitable for large-scale diet investigations on a broad range of animals. 相似文献
182.
BENOÎT SIMON‐BOUHET CLAIRE DAGUIN PASCALE GARCIA‐MEUNIER FRDRIQUE VIARD 《Molecular ecology resources》2005,5(1):121-123
Both human‐mediated introductions and climatic changes may promote the settlement of species in new areas outside of their natural geographical range. To investigate the settlement of recently established populations of the neogastropod Cyclope neritea, we developed eight microsatellite markers. Their usefulness was studied in two native populations previously found to be monomorphic with mitochondrial markers. The eight loci were found to be polymorphic in both populations, with two to 18 alleles per locus. This result shows promise for these loci in studies of recently founded populations of C. neritea. 相似文献
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ILYA M. D. MACLEAN GRAHAM E. AUSTIN MARK M. REHFISCH JAN BLEW OLIVIA CROWE SIMON DELANY KOEN DEVOS BERNARD DECEUNINCK KLAUS GÜNTHER KARSTEN LAURSEN MARC VAN ROOMEN JOHANNES WAHL 《Global Change Biology》2008,14(11):2489-2500
Detecting coherent signals of climate change is best achieved by conducting expansive, long‐term studies. Here, using counts of waders (Charadrii) collected from ca. 3500 sites over 30 years and covering a major portion of western Europe, we present the largest‐scale study to show that faunal abundance is influenced by climate in winter. We demonstrate that the ‘weighted centroids’ of populations of seven species of wader occurring in internationally important numbers have undergone substantial shifts of up to 115 km, generally in a northeasterly direction. To our knowledge, this shift is greater than that recorded in any other study, but closer to what would be expected as a result of the spatial distribution of ecological zones. We establish that year‐to‐year changes in site abundance have been positively correlated with concurrent changes in temperature, but that this relationship is most marked towards the colder extremities of the birds' range, suggesting that shifts have occurred as a result of range expansion and that responses to climate change are temperature dependent. Many attempts to model the future impacts of climate change on the distribution of organisms, assume uniform responses or shifts throughout a species' range or with temperature, but our results suggest that this may not be a valid approach. We propose that, with warming temperatures, hitherto unsuitable sites in northeastern Europe will host increasingly important wader numbers, but that this may not be matched by declines elsewhere within the study area. The need to establish that such changes are occurring is accentuated by the statutory importance of this taxon in the designation of protected areas. 相似文献
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