The shredding activity of gammarids facilitates the processing of organic matter by the subterranean amphipod Niphargus rhenorhodanensis

1. The functional feeding group approach has been widely used to describe the community structure of benthic invertebrates in relation to organic matter resources. Based on this functional framework, positive interactions between feeding groups (especially shredders and collector‐gatherers) were postulated in the River Continuum Concept. However, relationships with organic matter have been poorly documented for invertebrates living in the hyporheic zone. 2. We hypothesised that the common subterranean amphipod Niphargus rhenorhodanensis would feed on fine particulate organic matter (FPOM), which is more abundant than coarse particulate organic matter (CPOM) in hyporheic habitats, and should be favoured by the occurrence of shredders that produce FPOM from CPOM. 3. We used laboratory experiments to quantify leaf litter processing by N. rhenorhodanensis and a common shredder, the surface amphipod Gammarus roeselii. We estimated rates of feeding and assimilation (using nitrogen stable isotopes) of the two species separately and together to reveal any potential shredder–collector facilitation between them. 4. Measured leaf litter mass loss showed that N. rhenorhodanensis did not act as a shredder, unlike G. roeselii. Organic matter dynamics and ¹⁵N/¹⁴N ratios in tissues of niphargids indicated that N. rhenorhodanensis was a collector‐gatherer feeding preferentially on FPOM. We also found a positive influence of the gammarid shredders on the assimilation rate of N. rhenorhodanensis, which fed on FPOM produced by the shredders, supporting the hypothesis of a positive interaction between surface shredders and hyporheic collector‐gatherers.     

Direct and indirect effects of nitrogen deposition on species composition change in calcareous grasslands

Atmospheric nitrogen (N) deposition has been identified as a major threat to biodiversity, but field surveys of its effects have rarely focussed on sites which are actively managed to maintain characteristic species. We analysed permanent quadrat data from 106 plots in nature reserves on calcareous grassland sites in the United Kingdom collected during a survey between 1990 and 1993 and compared the data with the results from resurvey of 48 of these plots between 2006 and 2009. N deposition showed no significant spatial association with species richness, species diversity, or the frequency of species adapted to low nutrient conditions in the 1990–1993 dataset. However, temporal analysis showed that N deposition was significantly associated with changes in Shannon diversity and evenness. In plots with high rates of N deposition, there was a decrease in species diversity and evenness, a decline in the frequency of characteristic calcareous grassland species, and a lower number of rare and scarce species. As all sites had active management to maintain a high diversity and characteristic species, our results imply that even focussed management on nature conservation objectives cannot prevent adverse effects of high rates of N deposition. Structural equation modelling was used to compare different causal mechanisms to explain the observed effects. For change in Shannon diversity, direct effects of N deposition were the dominant mechanism and there was an independent effect of change in grazing intensity. In contrast, for change in herb species number, indirect effects on soil acidity, linked to both N and S deposition, were more important than direct effects of N deposition.     

Very-broad-scale assessment of human impacts on river condition

1. Management of whole rivers and river catchments requires a comprehensive set of information about river condition and use, both existing and historical, and the links between them at regional, state or national scales. This paper outlines a new approach to the assessment of river condition, using a small team was able to assess 210 000 km of rivers across more than 3 million km² of Australia in little more than a year. 2. The approach was driven by a hierarchical model of river function, which assumed that broad‐scale catchment characteristics affect local hydrology, habitat features, water quality and, ultimately, aquatic biota. The model provided the basis for selecting important ecologically relevant features that indices should represent. For each reach of each river we derived a biological index and an environmental index based on measures quantifying catchment and hydrological condition, and habitat and water quality condition. Data came from existing state and national databases, satellite images, site measurements and process models. 3. All indices were calculated as deviation from a reference condition, were range‐standardised and were divided into equivalent bands of condition. Amalgamation of index components and of sub‐indices was determined by consideration of their ecological effects; for example, general degradation might be additive, but toxic effects of one component would override all others. 4. Several internal and external validation methods were employed, with the all‐important validation of the final assessments undertaken by comparison with a similar index based on locally measured data. 5. The environmental assessment classified 14% of reaches as largely unmodified, 67% as moderately modified and 19% as substantially modified by human impacts. The biological assessment based on site assessments and modelled data using invertebrates indicated that 70% of reaches were equivalent to reference condition and that 30% were significantly impaired. Catchment disturbance, elevated sediment and nutrient loads, and habitat degradation all contributed to these results. These impacts have all occurred during the last 200 years (post‐European settlement). 6. Partly as a result of the assessments of this study the Australian Government has begun to adopt a more environmentally sustainable approach to broad‐scale water management.     

Assessing the implications of the loss of set‐aside for farmland birds

Between 1988 and 2007, set‐aside, a European Commission production control measure, took an average of 10% of arable farmland in the EU out of production each year. In 2007, the set‐aside rate was set to 0% and the scheme was later abandoned altogether. By assessing associations of farmland birds with set‐aside and quantifying the extent of set‐aside loss, this study aims to assess the implications of set‐aside loss for farmland bird conservation. During the lifespan of set‐aside, a large number of studies assessed the biodiversity value of set‐aside and other agricultural crops and habitats. Where possible we considered measurable benefits of set‐aside. However, some studies did not specify the type of set‐aside and in some cases set‐aside fields were grouped with cereal stubble fields. In these cases, we took the pragmatic approach of assessing the value of generic stubble fields as a conservative minimum estimate of the value of set‐aside fields. A re‐analysis of data from 30 intensive studies demonstrates that farmland bird densities tended to be higher on set‐aside than on either cereal or oilseed rape crops. Without mitigation, these are the two crops likely to replace most set‐aside fields. We estimate that 26–52% of the farmland populations of key granivorous passerines were present on stubble fields, giving an indication of the proportion of birds likely to be present on set‐aside fields within this broader category. An extensive survey of lowland farmland during winters 1999/2000, 2000/2001 and 2002/2003, repeated in February 2008, showed a doubling of the number of 1‐km squares with no stubble and a halving of the number of squares with more than 10 ha of stubble. After set‐aside abandonment, 72% of squares had no stubble in the important late winter period, confirming that many of the former stubble fields were retained as set‐aside. A simple correlative model suggests that this could cause a small increase in the rate of decline of Skylark Alauda arvensis and Yellowhammer Emberiza citrinella populations, assuming causal links between stubble area and demography. However, even if this assumption cannot be supported, these results clearly indicate that a significant proportion of some farmland bird populations will need to find alternative breeding and foraging habitats.     

Global assessment of coral bleaching and required rates of adaptation under climate change

Elevated ocean temperatures can cause coral bleaching, the loss of colour from reef‐building corals because of a breakdown of the symbiosis with the dinoflagellate Symbiodinium. Recent studies have warned that global climate change could increase the frequency of coral bleaching and threaten the long‐term viability of coral reefs. These assertions are based on projecting the coarse output from atmosphere–ocean general circulation models (GCMs) to the local conditions around representative coral reefs. Here, we conduct the first comprehensive global assessment of coral bleaching under climate change by adapting the NOAA Coral Reef Watch bleaching prediction method to the output of a low‐ and high‐climate sensitivity GCM. First, we develop and test algorithms for predicting mass coral bleaching with GCM‐resolution sea surface temperatures for thousands of coral reefs, using a global coral reef map and 1985–2002 bleaching prediction data. We then use the algorithms to determine the frequency of coral bleaching and required thermal adaptation by corals and their endosymbionts under two different emissions scenarios. The results indicate that bleaching could become an annual or biannual event for the vast majority of the world's coral reefs in the next 30–50 years without an increase in thermal tolerance of 0.2–1.0°C per decade. The geographic variability in required thermal adaptation found in each model and emissions scenario suggests that coral reefs in some regions, like Micronesia and western Polynesia, may be particularly vulnerable to climate change. Advances in modelling and monitoring will refine the forecast for individual reefs, but this assessment concludes that the global prognosis is unlikely to change without an accelerated effort to stabilize atmospheric greenhouse gas concentrations.     

Drought and Oxidative Load in the Leaves of C3 Plants: a Predominant Role for Photorespiration?

Although active oxygen species are produced at high rates inboth the chloroplasts and peroxisomes of the leaves of C₃ plants,most attention has focused on the potentially damaging consequencesof enhanced chloroplastic production in stress conditions suchas drought. This article attempts to provide quantitative estimatesof the relative contributions of the chloroplast electron transportchain and the glycolate oxidase reaction to the oxidative loadplaced on the photosynthetic leaf cell. Rates of photorespiratoryH₂O₂ production were obtained from photosynthetic and photorespiratoryflux rates, derived from steady-state leaf gas exchange measurementsat varying irradiance and ambient CO₂. Assuming a 10 % allocationof photosynthetic electron flow to the Mehler reaction, photorespiratoryH₂O₂ production would account for about 70 % of total H₂O₂ formedat all irradiances measured. When chloroplastic CO₂ concentrationrates are decreased, photorespiration becomes even more predominantin H₂O₂ generation. At the increased flux through photorespirationobserved at lower ambient CO₂, the Mehler reaction would haveto account for more than 35 % of the total photosynthetic electronflow in order to match the rate of peroxisomal H₂O₂ production.The potential signalling role of H₂O₂ produced in the peroxisomesis emphasized, and it is demonstrated that photorespiratoryH₂O₂ can perturb the redox states of leaf antioxidant pools.We discuss the interactions between oxidants, antioxidants andredox changes leading to modified gene expression, particularlyin relation to drought, and call attention to the potentialsignificance of photorespiratory H₂O₂ in signalling and acclimation.     

Sink-Regulation of Photosynthesis in Relation to Temperature in Sunflower and Rape

Stimulation of the rate of photosynthesis at 2·0 kPaO₂ in comparison with 21 kPa O₂ and carbohydrate accumulationover 4h were measured during exposure of sunflower (Helianthusannuus L.) and rape (Brassica napus L.), grown at 30 °Cand 13 °C, to temperatures between 7 °C and 35 °C.The effect of reducing source: sink ratio by shading on theresponse of photosynthetic rate to temperature was also determined.Stimulation of photosynthesis by 2·0 kPa O₂ in comparisonwith 21 kPa O₂ decreased over 4 h at cool temperatures in sunflowerplants grown at 30 °C but not in rape grown at 30 °C.Stimulation did not decrease over 4 h in plants grown at 13CC. Sucrose was the main carbohydrate accumulated over 4 h;its accumulation increased with decreasing temperature. Starchaccumulation either decreased or remained the same with decreasingtemperature. In plants grown at 30 °C more carbohydrateaccumulated between 8 °C and 21 °C in sunflower thanin rape, but more carbohydrate accumulated at 30 °C in rapethan in sunflower. In plants grown at 13 °C much less carbohydrateaccumulated between 13 °C and 23 °C than in plants grownat 30 °C. Photosynthetic rate in plants grown at 30 °Cexposed to between 20 °C and 35 °C over 32 h (14 h light-10h dark-8 h light), declined over 32 h at 20 °C and 25 °Cin sunflower and at 20 °C in rape. This fall over 32 h,especially at 20 °C in sunflower, was significantly reducedby shading the rest of the plant. Shading had little effecton photosynthetic rate above 25 °C. The work confirms thatlow temperature imposes a sink-limitation on photosynthesiswhich occurs at higher temperatures in sunflower than in rape.This limitation may be relieved by decreasing the source:sinkratio. Key words: Sunflower, rape, photosynthesis, carbohydrates, sink demand, temperature     

Contamination on sandflats and the decoupling of linked ecological functions

Benthic macrofauna can influence inputs and transformations of energy and matter in estuaries, affecting both the stocks of vital materials (e.g. carbon, oxygen) and the rates of key processes (e.g. organic matter decomposition, nutrient uptake). Although a number of studies have identified shifts in functional groups or biological traits in relation to anthropogenic stressors, there have been few field‐based assessments of changes in functioning associated with stress gradients. We used a comparative experimental approach to investigate functioning on two sandflats with differing exposures to urban contaminants. Apart from significant differences in sediment contaminant concentrations (43.2 ± 1.8 mg kg^?1 Zn and 15.6 ± 0.9 mg kg^?1 Pb at the Pollen site; 17.7 ± 0.7 mg kg^?1 Zn and 7.9 ± 0.9 mg kg^?1 Pb at the Waiheke site), the two sandflats were readily comparable: both had similar sediment grain size distributions and were dominated by the same macrofaunal species; and both were in non‐eutrophic New Zealand marine reserves with low ambient sediment organic matter content. To better understand the effects of contaminants on biologically mediated transformations of organic matter into inorganic nutrients, we manipulated sediment organic matter content and macrofaunal abundance in standardized treatments at each site. Fluxes of oxygen and ammonium, which are linked to key sandflat processes such as organic matter decomposition and benthic photosynthesis, were measured as response variables 1 week after the experimental manipulations. We predicted more efficient organic matter processing on the uncontaminated flat and thus expected to see elevated ammonium efflux in response to organic enrichment treatments at this site. Higher rates of benthic photosynthesis were predicted for plots with higher ammonium efflux, as ammonium is a readily utilizable form of limiting inorganic nitrogen. We documented significant positive relationships between ammonium uptake and benthic primary production on the uncontaminated flat, but weaker/insignificant relationships at the contaminated site. Our data were consistent with theories of increased variability and a decoupling of system processes with increasing amounts of stress.