Simple three‐pool model accurately describes patterns of long‐term litter decomposition in diverse climates

As atmospheric CO₂ increases, ecosystem carbon sequestration will largely depend on how global changes in climate will alter the balance between net primary production and decomposition. The response of primary production to climatic change has been examined using well‐validated mechanistic models, but the same is not true for decomposition, a primary source of atmospheric CO₂. We used the Long‐term Intersite Decomposition Experiment Team (LIDET) dataset and model‐selection techniques to choose and parameterize a model that describes global patterns of litter decomposition. Mass loss was best represented by a three‐pool negative exponential model, with a rapidly decomposing labile pool, an intermediate pool representing cellulose, and a recalcitrant pool. The initial litter lignin/nitrogen ratio defined the size of labile and intermediate pools. Lignin content determined the size of the recalcitrant pool. The decomposition rate of all pools was modified by climate, but the intermediate pool's decomposition rate was also controlled by relative amounts of litter cellulose and lignin (indicative of lignin‐encrusted cellulose). The effect of climate on decomposition was best represented by a composite variable that multiplied a water‐stress function by the Lloyd and Taylor variable Q₁₀ temperature function. Although our model explained nearly 70% of the variation in LIDET data, we observed systematic deviations from model predictions. Below‐ and aboveground material decomposed at notably different rates, depending on the decomposition stage. Decomposition in certain ecosystem‐specific environmental conditions was not well represented by our model; this included roots in very wet and cold soils, and aboveground litter in N‐rich and arid sites. Despite these limitations, our model may still be extremely useful for global modeling efforts, because it accurately (R²=0.6804) described general patterns of long‐term global decomposition for a wide array of litter types, using relatively minimal climatic and litter quality data.     

Chronic exposure of diesel exhaust particles induces alveolar enlargement in mice

Background

Diesel exhaust particles (DEPs) are deposited into the respiratory tract and are thought to be a risk factor for the development of diseases of the respiratory system. In healthy individuals, the timing and mechanisms of respiratory tract injuries caused by chronic exposure to air pollution remain to be clarified.

Methods

We evaluated the effects of chronic exposure to DEP at doses below those found in a typical bus corridor in Sao Paulo (150 μg/m³). Male BALB/c mice were divided into mice receiving a nasal instillation: saline (saline; n = 30) and 30 μg/10 μL of DEP (DEP; n = 30). Nasal instillations were performed five days a week, over a period of 90 days. Bronchoalveolar lavage (BAL) was performed, and the concentrations of interleukin (IL)-4, IL-10, IL-13 and interferon-gamma (INF-γ) were determined by ELISA-immunoassay. Assessment of respiratory mechanics was performed. The gene expression of Muc5ac in lung was evaluated by RT-PCR. The presence of IL-13, MAC2+ macrophages, CD3+, CD4+, CD8+ T cells and CD20+ B cells in tissues was analysed by immunohistochemistry. Bronchial thickness and the collagen/elastic fibers density were evaluated by morphometry. We measured the mean linear intercept (Lm), a measure of alveolar distension, and the mean airspace diameter (D0) and statistical distribution (D2).

Results

DEP decreased IFN-γ levels in BAL (p = 0.03), but did not significantly alter IL-4, IL-10 and IL-13 levels. MAC2+ macrophage, CD4+ T cell and CD20+ B cell numbers were not altered; however, numbers of CD3+ T cells (p ≤ 0.001) and CD8+ T cells (p ≤ 0.001) increased in the parenchyma. Although IL-13 (p = 0.008) expression decreased in the bronchiolar epithelium, Muc5ac gene expression was not altered in the lung of DEP-exposed animals. Although respiratory mechanics, elastic and collagen density were not modified, the mean linear intercept (Lm) was increased in the DEP-exposed animals (p ≤ 0.001), and the index D2 was statistically different (p = 0.038) from the control animals.

Conclusion

Our data suggest that nasal instillation of low doses of DEP over a period of 90 days results in alveolar enlargement in the pulmonary parenchyma of healthy mice.

Electronic supplementary material

The online version of this article (doi:10.1186/s12931-015-0172-z) contains supplementary material, which is available to authorized users.     

The sensitivity of annual grassland carbon cycling to the quantity and timing of rainfall

Global climate models predict significant changes to the rainfall regimes of the grassland biome, where C cycling is particularly sensitive to the amount and timing of precipitation. We explored the effects of both natural interannual rainfall variability and experimental rainfall additions on net C storage and loss in annual grasslands. Soil respiration and net primary productivity (NPP) were measured in treatment and control plots over four growing seasons (water years, or WYs) that varied in wet‐season length and the quantity of rainfall. In treatment plots, we increased total rainfall by 50% above ambient levels and simulated one early‐ and one late‐season storm. The early‐ and late‐season rain events significantly increased soil respiration for 2–4 weeks after wetting, while augmentation of wet‐season rainfall had no significant effect. Interannual variability in precipitation had large and significant effects on C cycling. We observed a significant positive relationship between annual rainfall and aboveground NPP across the study (P=0.01, r²=0.69). Changes in the seasonal timing of rainfall significantly affected soil respiration. Abundant rainfall late in the wet season in WY 2004, a year with average total rainfall, led to greater net ecosystem C losses due to a ～50% increase in soil respiration relative to other years. Our results suggest that C cycling in annual grasslands will be less sensitive to changes in rainfall quantity and more affected by altered seasonal timing of rainfall, with a longer or later wet season resulting in significant C losses from annual grasslands.     

Isolation of Catenated Forms of R Factor DNA from Minicells

STUDIES^1–6 of the molecular nature of antibiotic resistance (R) factors in Escherichia coli have shown that several of them consist of covalently closed molecules of circular DNA. Use was made of this property in the separation of the R factor from chromosomal DNA of E. coli, which has a similar nucleotide-base composition. In selecting for covalently circular R factor DNA molecules, however, the procedures used in these earlier experiments-caesium chloride-ethidium bromide centrifuga-tion⁷ and bulk nitrocellulose adsorption²—necessarily selected against isolation of other (non-circular) forms of R factor DNA that might have been present.     

Disturbance and the community structure of stream invertebrates: patch-specific effects and the role of refugia

1. We have previously shown that the impact of spates on stream invertebrates may differ among patches separated by distances of metres or less. Here we analyse the species-specific flood responses of larval chironomids and adult and near mature copepods living in different patch types. Four patch types (with eight replicates of each) were compared: the sandy mid-channel, fine sediments around dams, coarse sediments around dams, and dam debris. Additionally, since some fine sediment patches had been shown previously to act as flow refugia while others did not, we also examined species-specific responses in refugium vs. non-refugium fine sediment patches. Detrended correspondence analysis was used to test for changes in assemblage structure (species composition and relative abundance). 2. Species richness was not altered in a predictable manner by floods; the least stable patch types (mid-channel and coarse patches) did not necessarily show reduced species richness during the spate. 3. As indicated by the spread of DCA ordination scores, there was generally a high degree of overlap in the species composition among the four patch types. Nevertheless, copepod species composition and relative abundance were more similar among patch types during the spate than pre-spate. Spates may induce a re-distribution of copepod species among the patch types. Chironomid species composition and relative abundance were no more similar among patch types during the spate than pre- or post-spate. 4. For both chironomids and copepods, species composition and relative abundance (as assessed by DCA ordination scores) in refugium patches changed more in response to the spate than in the non-refugium patches. An influx of individuals from just a few species for each group was responsible for the change in assemblage structure. Thus, despite the fact that our past work has shown that refugia may confer enhanced resistance and resilience of copepod and chironomid assemblages in terms of total faunal abundances, the present work suggests that resistance and resilience of the species composition of the community apparently are no greater in refugium patches than in non-refugium patches.     

Mediterranean anemia

There are two forms of Mediterranean anemia, one mild, the other severe. The major variety is characterized by pronounced anemia and systemic changes. In the minor form, usually there is no anemia or other clinical abnormality. The milder disease is relatively common in Italians, but both forms may occur in persons of non-Mediterranean ancestry, as well as in those who come from areas adjoining the Mediterranean Sea. Diagnosis of the disease is made on the basis of history, clinical observation, roentgen studies of the bones, and exceptionally painstaking laboratory tests. Periodic transfusions of whole blood are necessary for persons with the more severe form of the disease.