Distribution of recombination crossovers and the origin of haplotype blocks: the interplay of population history,recombination, and mutation

Recent studies suggest that haplotypes are arranged into discrete blocklike structures throughout the human genome. Here, we present an alternative haplotype block definition that assumes no recombination within each block but allows for recombination between blocks, and we use it to study the combined effects of demographic history and various population genetic parameters on haplotype block characteristics. Through extensive coalescent simulations and analysis of published haplotype data on chromosome 21, we find that (1) the combined effects of population demographic history, recombination, and mutation dictate haplotype block characteristics and (2) haplotype blocks can arise in the absence of recombination hot spots. Finally, we provide practical guidelines for designing and interpreting studies investigating haplotype block structure.     

新疆副新蚤属一新种记述(蚤目:毛蚤科)

球副新蚤Paraneopsylla globa新种 鉴别特征 本新种与深窦副新蚤(P.ioffi Tiflov,1937)的形态比较相似,其主要区别是新种第9腹板后臂前缘近端处明显前凸,后缘虽微凹但未形成深窦,端部纯圆,未形成背角;阳茎钩突除端部膜状增宽外,基部尚赘生大的球形膜状物。新种♀第7腹板端缘上叶突出比较狭小。 形态记述 头部(图1)额瘤齿状,嵌于额缘近下1/4处。下唇须约达前足基节长的3/4—4/5。额宗列3—4支宗,均较细小。眼宗列3支宗,较粗长。后头宗3列,依次为1—2、2—3、5—6支,前两列除下位宗外均较细小。 胸部(图1):前胸栉两侧共有栉刺14支,栉前有一列宗4—6支。中胸背板有两列较完整的宗,其前尚有不少小宗,颈片每侧具假宗1—3支。 部分标本后胸背板后缘有1—2个端齿。前足基节外面有宗40—50支。后足基节内面有细宗25—40支,多位于近     

青藏高原东缘亚高山针叶林和采伐迹地中藓类生长速率及其影响因子

利用红油漆标记法,对青藏高原东缘地区壤塘林业局二林场亚高山采伐迹地和云杉(Picea)原始林中的6种藓类近一个生长季的生长速率进行了研究。结合原地同时进行的微气候观测,分析了气候因子和藓类生长速率之间的相关度。这6种藓类中,有5种在原始林和采伐迹地都出现,只有绢藓(Entodon conncinus)仅在采伐迹地出现。不同物种和不同生境条件下藓类的生长速率都不相同。塔藓(Hylocomium splendens)的茎生长速率最大,而阿萨姆曲尾藓(Dicranum assamicum)生长速率最小。生境对塔藓、阿萨姆曲尾藓和细叶羽藓(Thuidium lepidoziaceum)的生长速率影响很大,它们在林内比在采伐迹地生长快。锦丝藓(Actinothuidium hookeri)和垂枝藓(Rhytidiadelphus triquetrus)的生长速率中等并且对生境不敏感。据此可以将藓类分成生境敏感型和不敏感型。微气候5~7月分析显示林内比采伐迹地的辐射通量低,并且更为干燥。但是早上林内的蒸汽压亏缺(Vapor pressure deficit, VPD)一直比采伐迹地低。林内较低的蒸汽压亏缺和较低的辐射通量使其成为更有利于藓类的生长场所。对于那些生境类型不敏感的藓类,微地形的效应也许抵消了这种大生境的效应。藓类的生理生态特征如变水(Poikilohydry)特征等对其在严酷气候条件下的生存和生长起着重要的作用。如同积温一样,藓类的生长速率同样可以指示生境的适宜度, 因为其生长和蒸汽压亏缺紧密相关,是温度和湿度的函数,而这两个因素对于川西亚高山地区森林人工更新时幼苗的建植极为关键。因此藓类的生长状况可以作为指示适宜植树生境的指标。     

好氧反硝化细菌及其在微污染水源水修复中的应用研究进展

相比于氨氮,天然水体中的硝酸盐氮通常更稳定,导致更难将其从水中去除。由于好氧反硝化可以在有氧环境下进行反硝化作用去除硝酸盐氮,该过程对含有较高溶解氧的天然水体中硝酸盐氮处理有重要作用。本文综述了好氧反硝化菌的分离纯化现状、微生物代谢机制和环境影响因子,并介绍了功能菌群在微污染饮用水源水生物修复的应用研究进展。与一般的厌氧反硝化类似,好氧反硝化菌的种属分布较广,常见的如假单胞菌属(Pseudomoas)、产碱杆菌属(Alcaligenes)、副球菌属(Paracoccus)和芽孢杆菌属(Bacillus)等所属部分微生物均有好氧反硝化能力。大部分好氧反硝化菌株在最佳生长条件下(25–37℃、溶解氧浓度为3–5mg/L、pH为7–8、碳氮比为5–10)具有高效的脱氮效率。但目前好氧反硝化作用在微污染饮用水源水的生物修复方面的应用仍有着脱氮性能不稳定、菌剂流失等不足。此外,目前较少相关中试及实际工程应用的研究,需要进一步的深入探究。     

Plant-growth-promoting traits and antifungal potential of the Bacillus amyloliquefaciens YL-25

Biological control of plant soil-borne diseases has been shown as an attractive and an environment friendly alternative to chemical fungicides. Different microbial strains have been reported effective in controlling plant pathogens. Among those, Bacillus strains have their own importance. Bacillus amyloliquefaciens strain YL-25, isolated from the rhizosphere of healthy banana plant, was evaluated as bio-organic fertiliser (BIO) for its ability to promote plant growth and suppress Fusarium wilt of banana in pot experiment. The results showed that the application of the BIO containing strain YL-25 significantly promoted the growth of banana plants and decreased the incidence of Fusarium wilt compared to the organic fertiliser and chemical fertiliser (CF). In order to explore the beneficial mechanisms of strain YL-25, experiments were conducted in vitro. The phytohormones including indole-3-acetic acid and gibberellin A3 and stable antifungal compounds three homologous of iturin A were identified in the culture broth of strain YL-25. The strain YL-25 also showed the ability to degrade extracellular phytate in plate experiment. Owing to its innate multiple functional traits and biocontrol activity, the strain YL-25 may be used as plant-growth-promoting rhizobacterium and biocontrol agent against Fusarium wilt of banana.     

Ectopic expression of a cyanobacterial flavodoxin in creeping bentgrass impacts plant development and confers broad abiotic stress tolerance

Flavodoxin (Fld) plays a pivotal role in photosynthetic microorganisms as an alternative electron carrier flavoprotein under adverse environmental conditions. Cyanobacterial Fld has been demonstrated to be able to substitute ferredoxin of higher plants in most electron transfer processes under stressful conditions. We have explored the potential of Fld for use in improving plant stress response in creeping bentgrass (Agrostis stolonifera L.). Overexpression of Fld altered plant growth and development. Most significantly, transgenic plants exhibited drastically enhanced performance under oxidative, drought and heat stress as well as nitrogen (N) starvation, which was associated with higher water retention and cell membrane integrity than wild‐type controls, modified expression of heat‐shock protein genes, production of more reduced thioredoxin, elevated N accumulation and total chlorophyll content as well as up‐regulated expression of nitrite reductase and N transporter genes. Further analysis revealed that the expression of other stress‐related genes was also impacted in Fld‐expressing transgenics. Our data establish a key role of Fld in modulating plant growth and development and plant response to multiple sources of adverse environmental conditions in crop species. This demonstrates the feasibility of manipulating Fld in crop species for genetic engineering of plant stress tolerance.     

酶法转化DL-ATC合成L-半胱氨酸的酶促反应条件研究

目的:考察酶源保存方式、酶促反应时间、底物pH值、底物浓度、酶浓度、金属离子等因素对酶活力的影响。方法:以假单胞菌(Pseudomonassp.)TS1138为供试菌株,采用酸式茚三酮法测定L-半胱氨酸含量,研究了酶法转化DL-ATC合成L-半胱氨酸的酶促反应条件。结果:TS1138菌株中L-半胱氨酸脱巯基酶具有较高的活性,而且Mg2 、Mn2 、Fe2 、Zn2 、Cu2 等5种金属离子对DL-ATC水解酶酶系有不同程度的抑制,其中Cu2 对该酶系的抑制作用很大。结论:确定了TS1138菌株酶法转化DL-ATC合成L-半胱氨酸的最适酶促反应条件,为酶促反应动力学的研究奠定了基础。     

The interaction of folate-modified Bletilla striata polysaccharide-based micelle with bovine serum albumin

Glycoconjugate Journal - We fabricated an amphiphilic folate-modified Bletilla striata polysaccharide (FA-BSP-SA) copolymer that exhibited good biocompatibility and superior antitumor effects. This...     

基于野外调查和同质种植园实验的芦苇植物功能性状变异研究

研究表型可塑性和遗传变异在植物表型分化中的相对作用,有助于预测全球环境变化下的植物群落组成和生态系统功能的变化。芦苇（Phragmites australis）是全球性广布的草本植物,种内变异丰富,在我国西北和东部均存在多个分化稳定的生态型,但中国芦苇在更大尺度上的表型研究还非常匮乏。将位于黄河上游的宁夏平原和黄河下游的黄河三角洲作为研究区域,通过野外调查和同质种植园实验对芦苇自然种群的植物功能性状变异进行观测。结果表明,无论在野外还是同质种植园,黄河三角洲芦苇的基径、叶长和叶宽均显著大于宁夏平原芦苇,说明两个地区的芦苇种群之间存在着受遗传决定的表型分化,这可能与两个地区间的降水等气候差异有关。在野外,宁夏芦苇的株高和叶厚显著大于黄河三角洲芦苇,但在同质园中差异消失或相反,说明株高、叶厚受环境影响较大,表型可塑性也是芦苇适应环境变化的重要机制。在同质种植园中,宁夏平原芦苇的叶片氮磷含量较低,但株数却显著多于黄河三角洲芦苇,反映了不同地区芦苇之间存在不同的适应策略,宁夏平原芦苇更偏向于高扩散率的杂草策略,而黄河三角洲芦苇更偏向于竞争策略。此外,宁夏平原芦苇的株高、叶长两个性状以及基径-比叶面积相关性在野外和同质园两个环境中存在一致性,表明了性状变异和权衡策略的遗传稳定性。综上,位于黄河上下游的芦苇种群间存在着适应性分化,这是表型可塑性和遗传变异共同作用的结果,不同来源芦苇对全球变化下的多重环境因子的响应还需要进一步研究。