甜瓜果实糖含量相关性状QTL分析

以高糖栽培亲本自交系‘0246’为母本,低糖野生亲本自交系‘Y101’为父本,通过杂交得到了含135个单株的甜瓜远缘F2群体,分别测定甜瓜果实果糖、葡萄糖和蔗糖含量,将三者之和作为总糖含量,进行遗传连锁图谱构建及QTL分析。结果表明:(1)构建的甜瓜果实遗传图谱包含14个连锁群,覆盖基因组长度726.30cM,标记间平均距离为12.74cM。(2)检测到与总糖含量和果糖含量相关的QTL位点各1个,分别命名为Ts3.1和Fru4.1,贡献率分别为14.89%和13.02%,分布于第3、4连锁群,LOD值分别为3.60和3.10。2个QTL位点均为正向加性遗传,分别对增加总糖和果糖含量表现为增效累加效应。研究结果为开展甜瓜糖含量相关基因精细定位和克隆研究奠定了基础。     

大草蛉对草地贪夜蛾捕食潜能研究

草地贪夜蛾Spodoptera frugiperda JE Smith于2018年底至2019年初入侵我国后,迅速扩散,并在半年内对西南地区的玉米生产造成为害。田间调查和观测研究表明,田间虽然可见该害虫的天敌,但由于天敌种群数量低,无法形成有效控害的模式。为研究大草蛉对草地贪夜蛾的控害潜能,本研究进行了捕食功能反应试验。结果表明,大草蛉成虫对草地贪夜蛾卵以及大草蛉3龄幼虫对草地贪夜蛾1龄幼虫的捕食效应均能够很好的拟合HollingⅡ功能反应模型。其中,大草蛉成虫对贪夜蛾卵的理论日最大捕食量、瞬时攻击率和处理时间分别为1115.56头、1.004和0.0009 d。大草蛉幼虫对贪夜蛾低龄幼虫的理论日最大捕食量、瞬时攻击率和处理时间分别为358头、1.074和0.003 d。结果表明大草蛉具备对草地贪夜蛾卵和低龄幼虫进行有效控害的潜力,为应用天敌昆虫防治草地贪夜蛾提供了理论依据。     

对应分析和去趋势分析在有蹄类取食模式研究中的应用

本研究将2009年1月和2010年1月小兴安岭大沾河湿地自然保护区二可河林场内驼鹿冬季食性作为原始数据,分别以对应分析（CA）、去趋势分析（DCA）,并将数据以样本为单位进行标准化后,再进行去趋势分析（DCA_std）3种排序方法,对驼鹿冬季取食模式进行了研究,后通过普鲁克分析,比较了不同排序方法对大型有蹄类取食模式研究的效果。结果表明,3种排序法的1轴和2轴均能涵盖绝大多数信息量,CA涵盖79.27%,DCA涵盖66.65%,DCA_std涵盖68.22%;3种方法均能够在1轴上区分针叶树和落叶乔木类食物,在2轴上,3种方法主要能够达到针叶树种与除落叶乔木外的其他植物类别的区分。虽三者均能够展现有蹄类取食模式,但在图形可视化后,仅DCA_std无明显的弓形效应。普鲁克分析结果表明,DCA_std样本位移平方和与CA和DCA均有很大差异,即将数据先进行标准化再进行DCA分析能够有效去除弓形效应。因此,在由多度组成的食性数据在进行标准DCA分析前,应对数据进行前期处理会得到更好的效果。同时,以样本为单位的标准化将使排序分析结果生态学意义更明确。     

桦木酸对人胃癌SGC-7901细胞增殖的影响*

目的:利用不同浓度的桦木酸对人胃癌SGC-7901细胞增殖的影响。方法:桦木酸设4个不同浓度(0、10、20、30 μg/ml),并采用常规化疗药物5-Fu处理作为阳性对照,以探究其对细胞增殖的影响。采用台盼蓝拒染法和吉姆萨染色法分别检测桦木酸对人胃癌SGC-7901细胞生长抑制率及克隆形成率;EdU法检测SGC-7901的细胞增殖;利用流式细胞术检测细胞周期, 应用qRT-PCR和Western blot分别检测细胞周期蛋白cyclin D1,cyclin B1的mRNA和蛋白表达水平。结果:不同浓度的桦木酸处理人胃癌SGC-7901细胞48 h后,其细胞生长抑制率显著升高(P＜0.05),克隆形成率和细胞增殖率均明显降低(P＜0.01),且呈剂量和时间依赖性;人胃癌SGC-7901细胞被阻滞在G1/G0期,细胞周期蛋白cyclin D1和cyclin B1的mRNA和蛋白表达量也随桦木酸浓度升高而显著降低(P＜0.01)。且与5-Fu对照组相比,桦木酸浓度为20 μg/ml和30 μg/ml时,细胞增殖能力明显降低,细胞周期被抑制,细胞周期蛋白表达量均明显降低(P ＜0.05)。结论:桦木酸通过下调cyclin B1和cyclin D1基因表达,将人胃癌SGC-7901细胞阻滞在G1/G0期,从而抑制细胞增殖。     

肥沃耕层构建对东北黑土区旱地土壤肥力和玉米产量的影响

有机物料还田是提高土壤肥力、改善土壤结构和增加作物产量的重要农艺措施之一。本研究通过分析有机物料深混还田构建肥沃耕层后土壤的有机质、速效养分含量和玉米产量,明确了黑土区不同土壤类型旱地土壤肥力指标和玉米产量对肥沃耕层构建方式的响应特征,以期为实现东北黑土区旱地保护性利用和农业可持续发展提供科学依据。采用小区试验与大区示范相结合的方式,在黑龙江省、吉林省和辽宁省选取9个生态类型区作为试验点,土壤类型包括黑土(中厚黑土和薄层黑土)、草甸土、黑钙土、白浆土、棕壤、暗棕壤和褐土。每个试验点均设置了玉米秸秆深混构建肥沃耕层(CF_Ⅰ)、秸秆配合有机肥深混构建肥沃耕层(CF_Ⅱ)和无有机物料还田(CK)3个处理。其中,CF_Ⅰ、CF_Ⅱ处理的小区试验和大区示范的秸秆还田量分别为10000 kg·hm^-2和全量还田,CF_Ⅱ处理的有机肥施用量为30000 t·hm^-2;CF_Ⅰ和CF_Ⅱ处理中有机物料的还田深度均为0~35 cm。结果表明: 不同土壤类型旱地的土壤肥力差异较大,不同土层表现为亚耕层土壤肥力小于耕层土壤,其中暗棕壤和白浆土尤为突出;棕壤、褐土耕层和亚耕层的土壤肥力均偏低;黑土和草甸土的质地比较黏重和犁底层较厚。在试验时间为两年以上的5个试验点中,与CK相比,CF_Ⅰ和CF_Ⅱ处理耕层的土壤有机质、碱解氮、速效磷和速效钾含量平均增加1.85 g·kg^-1、20.16 mg·kg^-1、1.56 mg·kg^-1和17.2 mg·kg^-1,亚耕层较耕层增加了2.09 g·kg^-1、12.06 mg·kg^-1、2.18 mg·kg^-1和3.84 mg·kg^-1。与CK相比,CF_Ⅰ处理显著增加了耕作层和亚耕层土壤有机质和速效磷含量,CF_Ⅱ处理显著增加了耕作层和亚耕层的全部土壤肥力指标,说明肥沃耕层构建是提高土壤肥力的重要途径,其中玉米秸秆配施有机肥是快速提升土壤肥力的有效方法。受不同地区水热条件和土壤类型等的影响,不同试验区的玉米产量差异较大;不同处理间差异显著,表现为CF_Ⅱ>CF_Ⅰ>CK,说明肥沃耕层构建方式在不同生态类型区均能有效提高玉米产量。采用玉米秸秆或者玉米秸秆配合有机肥深混的肥沃耕层构建方式能够同步培肥耕层和亚耕层土壤,提高玉米产量。不同生态类型区应根据土壤类型、有机物料来源等采取相应的肥沃耕层构建方式,建议在有机肥源充足的区域,优先采用秸秆配合有机肥深混构建肥沃耕层。     

Formation of tight junctions and desmosomes protects MDCK cells against hyperthermic killing

Cell density is known to modify the survival of mammalian cells exposed to elevated temperatures. We have examined the role that cell–cell contact plays in this phenomenon. The formation of cell–cell contact is carried out by cells' junctional complex, i.e., tight junctions, desmosomes, and gap junctions. Lack of formation of tight junctions and desmosomes, or their opening, could interfere with the functions and structures of cell membrane. Membrane damage is at least partially responsible for cell death at elevated temperatures. MDCK cells with high density plated in low calcium medium form confluent monolayers devoid of the formation of tight junctions and desmosomes but quickly assemble them after Ca²⁺ restoration. We used MDCK cells and the calcium switch technique to investigate effects of cell–cell contact and, independently, of cell density on hyperthermic cell killing. We found that MDCK cells that formed tight junctions and desmosomes were more resistant to hyperthermic treatment than those that did not. Blocking the formation pathway of tight junctions made cells sensitive to heat. Cells growing at lowdensity showed almost the same survival as did cells at high density in the absence of the formation of tight junctions and desmosomes. The results suggest that the formation of tight junctions and desmosomes play a more important role in determining hyperthermic response than does density per se. The formation of tight junctions and desmosomes appears to protect cells modestly against hyperthermic killing. © 1994 Wiley-Liss, Inc.     

QC-Chain: Fast and Holistic Quality Control Method for Next-Generation Sequencing Data

Next-generation sequencing (NGS) technologies have been widely used in life sciences. However, several kinds of sequencing artifacts, including low-quality reads and contaminating reads, were found to be quite common in raw sequencing data, which compromise downstream analysis. Therefore, quality control (QC) is essential for raw NGS data. However, although a few NGS data quality control tools are publicly available, there are two limitations: First, the processing speed could not cope with the rapid increase of large data volume. Second, with respect to removing the contaminating reads, none of them could identify contaminating sources de novo, and they rely heavily on prior information of the contaminating species, which is usually not available in advance. Here we report QC-Chain, a fast, accurate and holistic NGS data quality-control method. The tool synergeticly comprised of user-friendly tools for (1) quality assessment and trimming of raw reads using Parallel-QC, a fast read processing tool; (2) identification, quantification and filtration of unknown contamination to get high-quality clean reads. It was optimized based on parallel computation, so the processing speed is significantly higher than other QC methods. Experiments on simulated and real NGS data have shown that reads with low sequencing quality could be identified and filtered. Possible contaminating sources could be identified and quantified de novo, accurately and quickly. Comparison between raw reads and processed reads also showed that subsequent analyses (genome assembly, gene prediction, gene annotation, etc.) results based on processed reads improved significantly in completeness and accuracy. As regard to processing speed, QC-Chain achieves 7–8 time speed-up based on parallel computation as compared to traditional methods. Therefore, QC-Chain is a fast and useful quality control tool for read quality process and de novo contamination filtration of NGS reads, which could significantly facilitate downstream analysis. QC-Chain is publicly available at: http://www.computationalbioenergy.org/qc-chain.html.     

MiRNA-181b suppresses IGF-1R and functions as a tumor suppressor gene in gliomas

MicroRNAs (miRNAs) are single-stranded, 18- to 23-nt RNA molecules that function as regulators of gene expression. Previous studies have shown that microRNAs play important roles in human cancers, including gliomas. Here, we found that expression levels of miR-181b were decreased in gliomas, and we identified IGF-1R as a novel direct target of miR-181b. MiR-181b overexpression inhibited cell proliferation, migration, invasion, and tumorigenesis by targeting IGF-1R and its downstream signaling pathways, PI3K/AKT and MAPK/ERK1/2. Overexpression of IGF-1R rescued the inhibitory effects of miR-181b. In clinical specimens, IGF-1R was overexpressed, and its protein levels were inversely correlated with miR-181b expression. Taken together, our results indicate that miR-181b functions in gliomas to suppress growth by targeting the IGF-1R oncogene and that miR-181b may serve as a novel therapeutic target for gliomas.