Genome‐wide distribution and functions of the AAE complex in epigenetic regulation in Arabidopsis

Heterochromatin is widespread in eukaryotic genomes and has diverse impacts depending on its genomic context. Previous studies have shown that a protein complex, the ASI1‐AIPP1‐EDM2 (AAE) complex, participates in polyadenylation regulation of several intronic heterochromatin‐containing genes. However, the genome‐wide functions of AAE are still unknown. Here, we show that the ASI1 and EDM2 mostly target the common genomic regions on a genome‐wide level and preferentially interacts with genetic heterochromatin. Polyadenylation (poly(A) sequencing reveals that AAE complex has a substantial influence on poly(A) site usage of heterochromatin‐containing genes, including not only intronic heterochromatin‐containing genes but also the genes showing overlap with heterochromatin. Intriguingly, AAE is also involved in the alternative splicing regulation of a number of heterochromatin‐overlapping genes, such as the disease resistance gene RPP4. We provided evidence that genic heterochromatin is indispensable for the recruitment of AAE in polyadenylation and splicing regulation. In addition to conferring RNA processing regulation at genic heterochromatin‐containing genes, AAE also targets some transposable elements (TEs) outside of genes (including TEs sandwiched by genes and island TEs) for epigenetic silencing. Our results reveal new functions of AAE in RNA processing and epigenetic silencing, and thus represent important advances in epigenetic regulation.     

The Crystal Structure of L-Leucine Dehydrogenase from Pseudomonas aeruginosa

Leucine dehydrogenase (LDH, EC 1.4.1.9) catalyzes the reversible deamination of branched-chain L-amino acids to their corresponding keto acids using NAD⁺ as a cofactor. LDH generally adopts an octameric structure with D4 symmetry, generating a molecular mass of approximately 400 kDa. Here, the crystal structure of the LDH from Pseudomonas aeruginosa (Pa-LDH) was determined at 2.5 _Å resolution. Interestingly, the crystal structure shows that the enzyme exists as a dimer with C2 symmetry in a crystal lattice. The dimeric structure was also observed in solution using multiangle light scattering coupled with size-exclusion chromatography. The enzyme assay revealed that the specific activity was maximal at 60°C and pH 8.5. The kinetic parameters for three different amino acid and the cofactor (NAD⁺) were determined. The crystal structure represents that the subunit has more compact structure than homologs’ structure. In addition, the crystal structure along with sequence alignments indicates a set of non-conserved arginine residues which are important in stability. Subsequent mutation analysis for those residues revealed that the enzyme activity reduced to one third of the wild type. These results provide structural and biochemical insights for its future studies on its application for industrial purposes.     

Pericyte-derived extracellular vesicle-mimetic nanovesicles ameliorate erectile dysfunction via lipocalin 2 in diabetic mice

Diabetes mellitus is one of the main causes of erectile dysfunction (ED). Men with diabetic ED do not respond well to oral phosphodiesterase-5 inhibitors owing to neurovascular dysfunction. Pericyte-derived extracellular vesicle-mimetic nanovesicles (PC-NVs) are known to promote nerve regeneration in a mouse model of cavernous nerve injury. Here, we report that administration of PC-NVs effectively promoted penile angiogenesis and neural regeneration under diabetic conditions, thereby improving erectile function. Specifically, PC-NVs induced endothelial proliferation and migration and reduced cell apoptosis under diabetic conditions. In addition, PC-NVs induced neural regeneration in STZ-induced diabetic mice in dorsal root ganglion and major pelvic ganglion explants in vivo and ex vivo under high-glucose conditions. We found that lipocalin 2 (Lcn2) is a new target of PC-NVs in this process, demonstrating that PC-NVs exert their angiogenic and nerve-regeneration effects by activating MAP kinase and PI3K/Akt and suppressing P53 signaling pathway in an Lcn2-dependent manner. Our findings provide new conclusive evidence that PC-NVs can promote neurovascular regeneration and recovery of erectile function under diabetic conditions via an Lcn2-dependent mechanism. Thus, local administration of PC-NVs may be a promising treatment strategy for the treatment of diabetic ED.     

邻苯二甲酸对萝卜种子萌发、幼苗叶片膜脂过氧化及渗透调节物质的影响

华北地区是我国玉米的主产区,玉米秸秆还田不仅可有效改善土壤理化性状、提高土壤生物有效性,还会在腐解过程中释放出目前公认的化感物质——酚酸类物质,邻苯二甲酸是玉米秸秆腐解液中的主要酚酸类物质。从玉米秸秆还田过程中主要腐解产物(邻苯二甲酸)对蔬菜作物的化感效应角度进行了研究,为量化秸秆还田量及构建粮-菜轮作制度探寻化感效应依据。试验以萝卜为蔬菜材料,通过配置4个浓度(0.05、0.5、1.0、2.0 mmol/L)的邻苯二甲酸溶液,模拟玉米秸秆还田条件,以清水为对照,研究主要腐解产物邻苯二甲酸对萝卜种子萌发、幼苗生长、膜脂过氧化作用及渗透调节物质的影响。结果表明:(1)萝卜不同生育期对邻苯二甲酸化感效应的响应程度不同。在0.05-1 mmol/L浓度范围内,邻苯二甲酸处理促进了萝卜种子萌发,但随着处理浓度的增大,促进作用减弱;浓度达到2 mmol/L时对萝卜种子萌发具有抑制效果。(2)邻苯二甲酸0.05mmol/L处理,促进了萝卜幼苗干鲜物质积累,幼苗根系生长,其中根系长度和根系表面积分别比对照提高42.03%、38.36%,显著高于清水对照;植株体内超氧化物歧化酶(Superoxide dismutase, SOD)活性增大,过氧化物酶(Peroxidase, POD)、过氧化氢酶(Catalase, CAT)活性降低,膜脂过氧化产物丙二醛(Malonaldehyde, MDA)含量与对照无显著差异。(3)当邻苯二甲酸浓度超过0.5 mmol/L时,萝卜幼苗脂质过氧化伤害加剧,体内MDA含量急剧增加,代谢与生理功能出现紊乱,正常生长及干鲜物质积累受到显著抑制。邻苯二甲酸浓度达到2 mmol/L时,叶片数较对照降低了36.51%;根系长度、根系表面积及根尖数降幅分别为64.46%、40.20%、41.28%。(4)对于渗透调节物质的影响,邻苯二甲酸处理促进了萝卜幼苗叶片可溶性糖含量的增加,但随着处理浓度的升高其促进作用逐渐减弱;可溶性蛋白含量随着邻苯二甲酸处理浓度的升高表现出逐渐减少的趋势,分别较对照降低了12.82%、14.88%、21.58%、24.73%。因此,华北地区实施玉米-萝卜轮作模式,从化感效应角度研究玉米秸秆量化还田,应将土壤中邻苯二甲酸浓度控制在0.5 mmol/L范围以内,以防止邻苯二甲酸浓度过高对萝卜幼苗生长的抑制作用。     

烯效唑干拌种对小麦氮素积累和运转及籽粒蛋白质品质的影响

通过田间试验,研究了不同烯效唑干拌种剂量对3个不同筋力小麦品种植株氮素积累、运转和籽粒蛋白质品质的影响,结果表明,基因型、环境及烯效唑处理对小麦品质的影响效应依次减小,且均达到了极显著水平,但三者的互作效应较小。烯效唑处理后提高了不同生态点下不同小麦品种籽粒蛋白质含量和产量,处理后的面筋含量和沉淀值增加,面团形成时间和稳定时间延长;干拌种增加了开花期各营养器官中的氮素含量和单株氮素积累量,花后氮素总转移量、总转移率及其对籽粒氮的贡献率极显著提高,且处理后旗叶中可溶性蛋白质含量在花后15 d内均显著高于对照;对籽粒中氮含量而言,烯效唑处理后提高了灌浆初期籽粒中的非蛋白氮含量,花后5—20 d内均高于对照,灌浆期间籽粒蛋白氮含量均高于对照,因而处理后的粗蛋白质含量变化动态特点为谷底高、回升快。研究认为,烯效唑处理如同基因、环境一样独立影响小麦籽粒品质,而烯效唑处理后提高了开花初期旗叶中的可溶性蛋白质含量和花前营养器官中氮素含量及花后氮素转运量,可能是其提高籽粒非蛋白氮含量、促进籽粒蛋白质含量增加和蛋白质质量提高的重要原因之一,烯效唑干拌种对小麦籽粒蛋白质品质的改善具有广适性。     

根癌农杆菌介导的定点敲除技术在红色红曲菌中的应用

红曲菌(Monascus spp.)是一种重要的丝状真菌, 广泛应用于食品和医药领域中。目前, 由于对红曲菌遗传背景了解的很少, 因而对其重要功能基因的研究报道很少。本研究采用根癌农杆菌介导的转化技术对红色红曲菌(Monascus ruber)中推断的G-蛋白信号调节子mrfA基因的RGS功能域进行定点缺失研究, 探讨基于同源重组为基础的基因定点缺失技术在红曲菌基因功能鉴定中的可行性。构建的敲除载体pC805S左右同源臂长度分别为958 bp和824 bp, 将其转入受体菌M. ruber 中, 得到的138株转化子中, 有26株转化子发生了同源重组, 重组率达到18.8%。实验结果表明该技术作为红曲菌基因功能鉴定的方法是可行的。     

CXCL12-CXCR4生物学轴与干细胞

干细胞的生长、诱导、分化、迁移、归巢等过程中常伴随着趋化因子CXCL12及其受体CXCR4的变化,因而推测CXCL12-CXCR4生物学轴和干细胞之间存在着某种联系.干细胞是否分泌趋化因子？CXCL12-CXCR4生物学轴在干细胞生长、迁移、分化等过程中究竟有何影响？这些日益引起人们极大的兴趣.阐明CXCL12-CXCR4生物学轴和干细胞之间的关系,可能有助于寻找干细胞移植、组织重建和肿瘤治疗的新途径.     

Comparing Protein Expression in Erwinia amylovora Strain TS3128 Cultured under Three Sets of Environmental Conditions

Erwinia amylovora, the causal agent of fire-blight disease in apple and pear trees, was first isolated in South Korea in 2015. Although numerous studies, including omics analyses, have been conducted on other strains of E. amylovora, studies on South Korean isolates remain limited. In this study, we conducted a comparative proteomic analysis of the strain TS3128, cultured in three media representing different growth conditions. Proteins related to virulence, type III secretion system, and amylovoran production, were more abundant under minimal conditions than in rich conditions. Additionally, various proteins associated with energy production, carbohydrate metabolism, cell wall/membrane/envelope biogenesis, and ion uptake were identified under minimal conditions. The strain TS3128 expresses these proteins to survive in harsh environments. These findings contribute to understanding the cellular mechanisms driving its adaptations to different environmental conditions and provide proteome profiles as reference for future studies on the virulence and adaptation mechanisms of South Korean strains.     

野生鸡油菌子实体可培养微生物多样性及其功能分析

采用多种培养基对采自贵州省贵阳市3个样地的鸡油菌Cantharellus cibarius子实体内细菌和真菌进行分离、培养、鉴定和多样性分析.利用FAPROTAX和FUNGuild数据库分别对其功能类群进行注释,从而探究微生物群对鸡油菌生长发育的影响.结果 表明,鸡油菌子实体内共分离获得细菌49株,分属于2门、4纲、6...