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71.
72.
Yi‐Zhe Zhang Juncheng Lin Zhizhong Ren Chun‐Xiang Chen Daisuke Miki Si‐Si Xie Jian Zhang Ya‐Nan Chang Jing Jiang Jun Yan Qingshun Q. Li Jian‐Kang Zhu Cheng‐Guo Duan 《植物学报(英文版)》2021,63(4):707-722
Heterochromatin is widespread in eukaryotic genomes and has diverse impacts depending on its genomic context. Previous studies have shown that a protein complex, the ASI1‐AIPP1‐EDM2 (AAE) complex, participates in polyadenylation regulation of several intronic heterochromatin‐containing genes. However, the genome‐wide functions of AAE are still unknown. Here, we show that the ASI1 and EDM2 mostly target the common genomic regions on a genome‐wide level and preferentially interacts with genetic heterochromatin. Polyadenylation (poly(A) sequencing reveals that AAE complex has a substantial influence on poly(A) site usage of heterochromatin‐containing genes, including not only intronic heterochromatin‐containing genes but also the genes showing overlap with heterochromatin. Intriguingly, AAE is also involved in the alternative splicing regulation of a number of heterochromatin‐overlapping genes, such as the disease resistance gene RPP4. We provided evidence that genic heterochromatin is indispensable for the recruitment of AAE in polyadenylation and splicing regulation. In addition to conferring RNA processing regulation at genic heterochromatin‐containing genes, AAE also targets some transposable elements (TEs) outside of genes (including TEs sandwiched by genes and island TEs) for epigenetic silencing. Our results reveal new functions of AAE in RNA processing and epigenetic silencing, and thus represent important advances in epigenetic regulation. 相似文献
73.
三种回归分析方法在Hyperion影像LAI反演中的比较 总被引:2,自引:0,他引:2
借助GPS进行地面精确定位,利用LAI-2000冠层分析仅在攸县黄丰桥林场开展130个样地(60m×60m)的叶面积指数(Leaf Area Index,LAI)测量.采用FLAASH模块对Hyperion数据进行大气校正并与地面同步冠层观测数据进行拟合,通过研究地面实测LAI与Hyperion影像波段及其衍生的系列植被指数(NDVI、RVI等)的相关性,筛选出估算叶面积指数的植被指数因子.应用曲线估计、逐步回归及偏最小二乘三种回归分析技术分别建立叶面积指数的最优估算模型.结果表明:参与建模的因子中,比值植被指数(RVI)与LAI的相关性最大,敏感性最高,其次是SARVI0.1,NDVI705,NDVI,SARVI0.1,SARVI0.25;曲线估计、逐步回归分析和偏最小二乘回归三种分析方法所建的6个回归模型中,偏最小二乘回归的拟合效果最好,预测值与实测值的决定系数R2为0.84、曲线估计的拟合效果最低,预测值与实测值的决定系数R2为0.64;建模精度分析表明,选用5-6个自变量因子进行LAI建模是可靠的,以6个植被因子建立的偏最小二乘回归模型预测精度最高. 相似文献
74.
从海洋真菌Xylaria sp.SOF11的液体发酵提取物中分离到3个化合物,通过1H及13C NMR,2D NMR等方法,分别鉴定为19,20-epoxycytochalasin Q(1)、18-deoxy-19,20-epoxycytochalasin Q(2)和19,20-epoxycytochala-sin C(3)。化合物1~3对两株肿瘤细胞MCF-7和NCI-H460显示较弱的细胞毒活性。 相似文献
75.
Kathy Darragh Gabriela Montejo‐Kovacevich Krzysztof M. Kozak Colin R. Morrison Clarisse M. E. Figueiredo Jonathan S. Ready Camilo Salazar Mauricio Linares Kelsey J. R. P. Byers Richard M. Merrill W. Owen McMillan Stefan Schulz Chris D. Jiggins 《Ecology and evolution》2020,10(9):3895-3918
In many animals, mate choice is important for the maintenance of reproductive isolation between species. Traits important for mate choice and behavioral isolation are predicted to be under strong stabilizing selection within species; however, such traits can also exhibit variation at the population level driven by neutral and adaptive evolutionary processes. Here, we describe patterns of divergence among androconial and genital chemical profiles at inter‐ and intraspecific levels in mimetic Heliconius butterflies. Most variation in chemical bouquets was found between species, but there were also quantitative differences at the population level. We found a strong correlation between interspecific chemical and genetic divergence, but this correlation varied in intraspecific comparisons. We identified “indicator” compounds characteristic of particular species that included compounds already known to elicit a behavioral response, suggesting an approach for identification of candidate compounds for future behavioral studies in novel systems. Overall, the strong signal of species identity suggests a role for these compounds in species recognition, but with additional potentially neutral variation at the population level. 相似文献
76.
Improving the phenotype predictions of a yeast genome‐scale metabolic model by incorporating enzymatic constraints 下载免费PDF全文
Avlant Nilsson Petri‐Jaan Lahtvee Eduard J Kerkhoven Jens Nielsen 《Molecular systems biology》2017,13(8)
Genome‐scale metabolic models (GEMs) are widely used to calculate metabolic phenotypes. They rely on defining a set of constraints, the most common of which is that the production of metabolites and/or growth are limited by the carbon source uptake rate. However, enzyme abundances and kinetics, which act as limitations on metabolic fluxes, are not taken into account. Here, we present GECKO, a method that enhances a GEM to account for enzymes as part of reactions, thereby ensuring that each metabolic flux does not exceed its maximum capacity, equal to the product of the enzyme's abundance and turnover number. We applied GECKO to a Saccharomyces cerevisiae GEM and demonstrated that the new model could correctly describe phenotypes that the previous model could not, particularly under high enzymatic pressure conditions, such as yeast growing on different carbon sources in excess, coping with stress, or overexpressing a specific pathway. GECKO also allows to directly integrate quantitative proteomics data; by doing so, we significantly reduced flux variability of the model, in over 60% of metabolic reactions. Additionally, the model gives insight into the distribution of enzyme usage between and within metabolic pathways. The developed method and model are expected to increase the use of model‐based design in metabolic engineering. 相似文献
77.
Developmental programming: State‐of‐the‐science and future directions–Summary from a Pennington Biomedical symposium 下载免费PDF全文
78.
Mark R. Condina Johan O. R. Gustafsson Manuela Klingler‐Hoffmann Christopher J. Bagley Shaun R. McColl Peter Hoffmann 《Proteomics》2010,10(13):2516-2530
The quality of MALDI‐TOF mass spectrometric analysis is highly dependent on the matrix and its deposition strategy. Although different matrix‐deposition methods have specific advantages, one major problem in the field of proteomics, particularly with respect to quantitation, is reproducibility between users or laboratories. Compounding this is the varying crystal homogeneity of matrices depending on the deposition strategy used. Here, we describe a novel optimised matrix‐deposition strategy for LC‐MALDI‐TOF/TOF MS using an automated instrument that produces a nebulised matrix “mist” under controlled atmospheric conditions. Comparisons of this with previously reported strategies showed the method to be advantageous for the atypical matrix, 2,5‐DHB, and improved phosphopeptide ionisation when compared with deposition strategies for CHCA. This optimised DHB matrix‐deposition strategy with LC‐MALDI‐TOF/TOF MS, termed EZYprep LC, was subsequently optimised for phosphoproteome analysis and compared to LC‐ESI‐IT‐MS and a previously reported approach for phosphotyrosine identification and characterisation. These methods were used to map phosphorylation on epidermal growth factor‐stimulated epidermal growth factor receptor to gauge the sensitivity of the proposed method. EZYprep DHB LC‐MALDI‐TOF/TOF MS was able to identify more phosphopeptides and characterise more phosphorylation sites than the other two proteomic strategies, thus proving to be a sensitive approach for phosphoproteome analysis. 相似文献
79.
The type of competition modulates the ecophysiological response of grassland species to elevated CO2 and drought 下载免费PDF全文
J. Miranda‐Apodaca U. Pérez‐López M. Lacuesta A. Mena‐Petite A. Muñoz‐Rueda 《Plant biology (Stuttgart, Germany)》2015,17(2):298-310
The effects of elevated CO2 and drought on ecophysiological parameters in grassland species have been examined, but few studies have investigated the effect of competition on those parameters under climate change conditions. The objective of this study was to determine the effect of elevated CO2 and drought on the response of plant water relations, gas exchange, chlorophyll a fluorescence and aboveground biomass in four grassland species, as well as to assess whether the type of competition modulates that response. Elevated CO2 in well‐watered conditions increased aboveground biomass by augmenting CO2 assimilation. Drought reduced biomass by reducing CO2 assimilation rate via stomatal limitation and, when drought was more severe, also non‐stomatal limitation. When plants were grown under the combined conditions of elevated CO2 and drought, drought limitation observed under ambient CO2 was reduced, permitting higher CO2 assimilation and consequently reducing the observed decrease in aboveground biomass. The response to climate change was species‐specific and dependent on the type of competition. Thus, the response to elevated CO2 in well‐watered grasses was higher in monoculture than in mixture, while it was higher in mixture compared to monoculture for forbs. On the other hand, forbs were more affected than grasses by drought in monoculture, while in mixture the negative effect of drought was higher in grasses than in forbs, due to a lower capacity to acquire water and mineral nutrients. These differences in species‐level growth responses to CO2 and drought may lead to changes in the composition and biodiversity of the grassland plant community in future climate conditions. 相似文献
80.
Responses of two semiarid conifer tree species to reduced precipitation and warming reveal new perspectives for stomatal regulation 下载免费PDF全文
NúRIA Garcia‐Forner Henry D. Adams Sanna Sevanto Adam D. Collins Lee T. Dickman Patrick J. Hudson Melanie J.B. Zeppel Michael W. Jenkins Heath Powers Jordi Martínez‐Vilalta Nate G. Mcdowell 《Plant, cell & environment》2016,39(1):38-49
Relatively anisohydric species are predicted to be more predisposed to hydraulic failure than relatively isohydric species, as they operate with narrower hydraulic safety margins. We subjected co‐occurring anisohydric Juniperus monosperma and isohydric Pinus edulis trees to warming, reduced precipitation, or both, and measured their gas exchange and hydraulic responses. We found that reductions in stomatal conductance and assimilation by heat and drought were more frequent during relatively moist periods, but these effects were not exacerbated in the combined heat and drought treatment. Counter to expectations, both species exhibited similar gs temporal dynamics in response to drought. Further, whereas P. edulis exhibited chronic embolism, J. monosperma showed very little embolism due to its conservative stomatal regulation and maintenance of xylem water potential above the embolism entry point. This tight stomatal control and low levels of embolism experienced by juniper refuted the notion that very low water potentials during drought are associated with loose stomatal control and with the hypothesis that anisohydric species are more prone to hydraulic failure than isohydric species. Because direct association of stomatal behaviour with embolism resistance can be misleading, we advocate consideration of stomatal behaviour relative to embolism resistance for classifying species drought response strategies. 相似文献