Lineage divergence and speciation in the Web‐toed Salamanders (Plethodontidae: Hydromantes) of the Sierra Nevada,California

Peripatric speciation and the importance of founder effects have long been controversial, and multilocus sequence data and coalescent methods now allow hypotheses of peripatric speciation to be tested in a rigorous manner. Using a multilocus phylogeographical data set for two species of salamanders (genus Hydromantes) from the Sierra Nevada of California, hypotheses of recent divergence by peripatric speciation and older, allopatric divergence were tested. Phylogeographical analysis revealed two divergent lineages within Hydromantes platycephalus, which were estimated to have diverged in the Pliocene. By contrast, a low‐elevation species, Hydromantes brunus, diverged from within the northern lineage of H. platycephalus much more recently (mid‐Pleistocene), during a time of major climatic change in the Sierra Nevada. Multilocus species tree estimation and coalescent estimates of divergence time, migration rate, and growth rate reject a scenario of ancient speciation of H. brunus with subsequent gene flow and introgression from H. platycephalus, instead supporting a more recent divergence with population expansion. Although the small, peripheral distribution of H. brunus suggests the possibility of peripatric speciation, the estimated founding population size of the species was too large to have allowed founder effects to be important in its divergence. These results provide evidence for both recent speciation, most likely tied to the climatic changes of the Pleistocene, and older lineage divergence, possibly due to geological events, and add to evidence that Pleistocene glacial cycles were an important driver of diversification in the Sierra Nevada.     

DNA barcodes show cryptic diversity and a potential physiological basis for host specificity among Diplostomoidea (Platyhelminthes: Digenea) parasitizing freshwater fishes in the St. Lawrence River,Canada

Diplostomoid metacercariae parasitize freshwater fishes worldwide and cannot be identified to species based on morphology. In this study, sequences of the barcode region of cytochrome c oxidase subunit 1 (CO1) were used to discriminate species in 1088 diplostomoids, most of which were metacercariae from fish collected in the St. Lawrence River, Canada. Forty‐seven diplostomoid species were detected, representing a large increase in known diversity. Most species suggested by CO1 sequences were supported by sequences of internal transcribed spacer (ITS) of rDNA and host and tissue specificity. Three lines of evidence indicate that physiological incompatibility between host and parasite is a more important determinant of host specificity than ecological separation of hosts and parasites in this important group of freshwater fish pathogens. First, nearly all diplostomoid species residing outside the lens of the eyes of fish are highly host specific, while all species that occur inside the lens are generalists. This can be plausibly explained by a physiological mechanism, namely the lack of an effective immune response in the lens. Second, the distribution of diplostomoid species among fish taxa reflected the phylogenetic relationships of host species rather than their ecological similarities. Third, the same patterns of host specificity were observed in separate, ecologically distinctive fish communities.     

Climate-related, decadal-scale assemblage changes of seagrass-associated fishes in the northern Gulf of Mexico

Global temperatures are rising, and are expected to produce a poleward shift in the distribution of many organisms. We quantified changes in fish assemblages within seagrass meadows of the northern Gulf of Mexico (GOM) between the 1970s and 2006–2007, and observed changes consistent with this forecast. During 2006–2007 we sampled seagrass meadows using the same gears and methods previously employed by R. J. Livingston in coastal waters of northwest Florida throughout the 1970s. Comparisons between datasets revealed numerous additions to the fish fauna during 2006–2007 that were completely absent in the 1970s, including: Lutjanus synagris (lane snapper), Epinephelus morio (red grouper), Chaetodon ocellatus (spotfin butterflyfish), Mycteroperca sp (grouper, non gag), Centropristis philadelphica (rock sea bass), Fistularia tabacaria (bluespotted cornetfish), Ocyurus chrysurus (yellowtail snapper), Thalassoma bifasciatum (bluehead wrasse), Abudefduf saxatilis (sergeant major), Acanthuridae spp. (surgeonfishes) and Sparisoma viride (stoplight parrotfish). Several other species showed large increases in abundance during the interval between 1979 and 2006, including Mycteroperca microlepis (gag grouper, up ∼200 ×), Lutjanus griseus (gray snapper, up ∼105 ×), and Nicholsina usta (emerald parrotfish, up ∼22 ×). All of these are tropical or subtropical species that now make up a greater percentage of seagrass-associated fish assemblages in the northern GOM than in the past. Additionally, we observed regional increases in air and sea surface temperatures (> 3 °C) during the ∼30 years that separate Livingston's samples and ours that correlate with northern shifts in the distribution of warm-water fishes. Documenting these range shifts is a critical first step in investigating the consequences of global warming for endemic marine communities and fishery production in the northern GOM.     

Out on a Limb Parallels in Vertebrate and Invertebrate Limb Patterning and the Origin of Appendages

Recent discoveries of similarities in the developmental geneticsunderlying the formation of insect and vertebrate eyes, hearts,segments, and other structures have fueled new speculation anddebate about the origins of these features and the morphologicalcomplexity of early bilaterians. The pivotal issue concerningthese developmental similarities is whether they represent convergenceof pattern-forming mechanisms or reveal developmental regulatorymechanisms or even physical characteristics derived from a commonancestor. Here, we set forth an explicit hierarchical set ofcriteria for assessing developmental genetic similarities amonganimals. We suggest that interpretations of convergence versusdescent from common ancestors should be weighed by the number,type, and phylogenetic distribution of genetic regulatory similarities.We then apply these criteria to the analysis of appendage evolution.We conclude that there has been no continuity of any structurefrom which the insect and vertebrate appendages could be derived,i.e., they are not homologous structures. However, there isabundant evidence for continuity in the genetic informationfor building body wall outgrowths and/or appendages in severalphyla which must date at least to the common, potential appendage-bearingpre-Cambrian ancestor of most protostomes and deuterostomes.In order to further trace the origin of this genetic informationand of appendages, it will be essential to analyze more primitivetaxa such as the Cnidaria and to obtain a much better fossilrecord of pre-Cambrian animals.     

Predation of late Marjuman (Cambrian) linguliformean brachiopods from the Deadwood Formation of South Dakota, USA

One hundred and twenty-five linguliformean brachiopods of late Marjuman (Cambrian) age with shell perforations, presumably caused by predation, were recovered from shallow-water limestones at two localities of the Deadwood Formation in the Black Hills of South Dakota, USA. Three-quarters of the perforated valves belonged to taxa in the order Acrotretida, while one-quarter of the specimens belonged to those of the order Lingulida. This is the first report of predation of fossil lingulids. In both orders there was a marked selection for valve type. Ninety-five per cent of all perforations of acrotretids were in the ventral valve, while 87% of all perforations of lingulids were in the dorsal valve. The highest rate of predation of collected acrotretids, at any stratigraphic horizon, was 22%, while the rate of predation of collected lingulids, at any given stratigraphic horizon, was as high as 9%. Half of the perforated valves had round holes with a sharp, non-beveled exterior edge, and half had irregularly shaped holes with chipped interior edges. The former type is attributed to either boring or a swift, piercing percussive strike, while the latter is attributed to a smashing percussive strike with a blunt appendage. A third type of perforation consisting of minute, roughly circular holes is thought to be too small to be the work of predators, and is assumed to be the result of an encrusting organism or parasite. The different types of perforation seen in the brachiopod valves indicate that there was more than one type of predator attacking them, including possibly one of the earliest durophages. Various hypothetical predators are suggested as potential candidates for causing the shell perforations. The criteria for their selection as possible linguliformean predators include possessing the ability to produce one of the two types of shell perforation, and being small enough to warrant preying on small (< 2 mm) brachiopods.     

The Elongation Response of Watermelon Hypocotyls to Indole-3-Acetic Acid: A Comparative Study of Excised Segments and Intact Plants

Carrington, C. M. S. and Esnard, J. 1988. The elongation responseof watermelon hypocotyls to indole-3-acetic acid: a comparativestudy of excised segments and intact plants.—J. exp. Bot39: 441–450. The auxin-growth response along the hypocotyl of Citrullus lanatus(Thumb.) Mansf. seedlings was studied. In excised segments,promotion of elongation was seen in all zones at the concentrationsof IAA used (10–4–10–2 mol m-3). In intactplants, only the most basal zone showed unequivocal IAA-extensionwhile in the most apical zone elongation was inhibited by auxin.This difference between segments and intact plants for apicalzones suggests a modifying effect of the apex and cotyledonson the growth response. Indeed, removal of the apex and colyledonsonly affected elongation in the zones adjacent to the excisionbut only in buffer-treated plants, not auxin-treated plants.Auxin supplied apically to the intact plant only resulted ina short-lived promotion of elongation whereas basally suppliedauxin gave a longer-lasting effect Zonal differences betweenauxin-promoted growth of excised segments suggests that sensitivityto auxin varies in the hypocotyl. The response of intact plantsto auxin was shown to be more complex than in segments. Thus,responses given by segments are poor indicators of auxin activityin intact plants. Key words: IAA, Citrullus lanatus, growth, plant hormone sensitivity     

Advancing breeding phenology in response to environmental change in a wild red deer population

Most evidence for advances in phenology of in response to recent climate warming in wild vertebrate populations has come from long‐term studies of birds. Few studies have either documented phenological advances or tested their climatic causes and demographic consequences in wild mammal systems. Using a long‐term study of red deer on the Isle of Rum, Scotland, we present evidence of significant temporal trends in six phenological traits: oestrus date and parturition date in females, and antler cast date, antler clean date, rut start date and rut end date in males. These traits advanced by between 5 and 12 days across a 28‐year study period. Local climate measures associated with plant growth in spring and summer (growing degree days) increased significantly over time and explained a significant amount of variation in all six phenological traits, largely accounting for temporal advances observed in some of the traits. However, there was no evidence for temporal changes in key female reproductive performance traits (offspring birth weight and offspring survival) in this population, despite significant relationships between these traits and female phenology. In males, average antler weights increased over time presumably as a result of improved resource availability and physiological condition through spring and summer. There was no evidence for any temporal change in average male annual breeding success, as might be expected if the timing of male rutting behaviour was failing to track advances in the timing of oestrus in females. Our results provide rare evidence linking phenological advances to climate warming in a wild mammal and highlight the potential complexity of relationships between climate warming, phenology and demography in wild vertebrates.     

Motion Analysis in the Assessment of Surgical Skill

Abstract

Manual skill is now widely recognised as an important aspect of training in surgery. However, measurement of the skill of a surgeon has in the past been rather subjective in nature, relying on the judgement of experts in the analysis of videotapes. Objective measurements can be made by analysing the velocities of a surgeon's hands during a procedure. In particular, we have found that the number of movements made during a typical procedure will decrease as the surgeon's skill increases. Velocity traces display purposeful movements corrupted by uncorrelated noise from sources such as hand tremor and measurement artefacts. However, we have found that it is possible to filter the noise effectively. Furthermore, we have shown that the skill measurement obtained by counting movements is highly robust to over or under filtering.     

Integrating genetic information into plant breeding programmes: how will we produce varieties from molecular variation,using bioinformatics?

The development of new varieties of crop plants is ongoing for plant breeders and progress since the Green Revolution has been steady, if not dramatic. With the recent sequencing of Arabidopsis thaliana and of rice the development of both physical and informational resources has entered a new phase. This paper examines the state of plant bioinformatics as it is now and as it is likely to develop in the future. It also looks rather further forward to what crop scientists might want from bioinformatics, before examining the likely physiological targets for sustainability traits and the prospects for their improvement in wheat. Wheat is taken as the focus crop because it is potentially one of the most dif. Cult to work with in molecular terms, both because of its large hexaploid genome size and because of its considerable genetic distance from the most information rich plant species, Arabidopsis. Finally, we examine how these tools might be used to track down the underlying genes controlling sustainability traits and how these may then be exploited in plant breeding programmes using marker‐ assisted selection.     

First pairing in Snow Geese Anser caerulescens: at what age and at what time of year does it occur?

In migratory birds, the place and time of pair formation are important parameters for population structure and dynamics. Geese are not only migratory but also exhibit long-term monogamy, and therefore the first pairing event in a bird's lifetime is of particular importance. Through behavioural observations of young, known-age, marked birds conducted on the wintering grounds during three winter seasons we investigated two aspects of the timing of first pair formation in the Wrangel Island population of Snow Geese Anser caerulescens : (1) the age at which birds first form pair bonds, and (2) the seasonal pattern of first pair formation. Wrangel Island Snow Geese paired considerably later in life than Snow Geese from a low-Arctic population: almost none of the birds formed pairs in their second winter, and many were still in sibling groups for at least part of that season. The proportion of birds in pairs continued to increase until at least 5 years of age. Most pairing took place during the observation periods, and in general the proportion of birds in pair bonds increased gradually throughout the winter season. The amount of pairing during spring migration or summer varied annually and among cohorts, indicating that even very young birds may be able to form pair bonds quickly if conditions on the breeding grounds are unusually favourable. Pairing later and remaining in family groups longer may be a response to breeding conditions in this high-Arctic colony. Here, productivity is typically low due to harsh weather and predation, whereas Snow Geese breeding in the low Arctic are less restricted and form pairs and start to breed when younger. The fact that most, but not all, pairing takes place on the wintering grounds helps explain why a previous study found a certain amount of gene flow between the two Wrangel Island subpopulations with separate wintering grounds.