Ecohydrological impacts of woody-plant encroachment: seasonal patterns of water and carbon dioxide exchange within a semiarid riparian environment

Across many dryland regions, historically grass‐dominated ecosystems have been encroached upon by woody‐plant species. In this paper, we compare ecosystem water and carbon dioxide (CO₂) fluxes over a grassland, a grassland–shrubland mosaic, and a fully developed woodland to evaluate potential consequences of woody‐plant encroachment on important ecosystem processes. All three sites were located in the riparian corridor of a river in the southwest US. As such, plants in these ecosystems may have access to moisture at the capillary fringe of the near‐surface water table. Using fluxes measured by eddy covariance in 2003 we found that ecosystem evapotranspiration (ET) and net ecosystem exchange of carbon dioxide (NEE) increased with increasing woody‐plant dominance. Growing season ET totals were 407, 450, and 639 mm in the grassland, shrubland, and woodland, respectively, and in excess of precipitation by 227, 265, and 473 mm. This excess was derived from groundwater, especially during the extremely dry premonsoon period when this was the only source of moisture available to plants. Access to groundwater by the deep‐rooted woody plants apparently decouples ecosystem ET from gross ecosystem production (GEP) with respect to precipitation. Compared with grasses, the woody plants were better able to use the stable groundwater source and had an increased net CO₂ gain during the dry periods. This enhanced plant activity resulted in substantial accumulation of leaf litter on the soil surface that, during rainy periods, may lead to high microbial respiration rates that offset these photosynthetic fluxes. March–December (primary growing season) totals of NEE were ?63, ?212, and ?233 g C m^?2 in the grassland, shrubland, and woodland, respectively. Thus, there was a greater disparity between ecosystem water use and the strength of the CO₂ sink as woody plants increased across the encroachment gradient. Despite a higher density of woody plants and a greater plant productivity in the woodland than in the shrubland, the woodland produced a larger respiration response to rainfall that largely offset its higher photosynthetic potential. These data suggest that the capacity for woody plants to exploit water resources in riparian areas results in enhanced carbon sequestration at the expense of increased groundwater use under current climate conditions, but the potential does not scale specifically as a function of woody‐plant abundance. These results highlight the important roles of water sources and ecosystem structure on the control of water and carbon balances in dryland areas.     

Long‐term impacts of invasive species on a native top predator in a large lake system

1. Declining abundances of forage fish and the introduction and establishment of non‐indigenous species have the potential to substantially alter resource and habitat exploitation by top predators in large lakes. 2. We measured stable isotopes of carbon (δ¹³C) and nitrogen (δ¹⁵N) in field‐collected and archived samples of Lake Ontario lake trout (Salvelinus namaycush) and five species of prey fish and compared current trophic relationships of this top predator with historical samples. 3. Relationships between δ¹⁵N and lake trout age were temporally consistent throughout Lake Ontario and confirmed the role of lake trout as a top predator in this food web. However, δ¹³C values for age classes of lake trout collected in 2008 ranged from 1.0 to 3.9‰ higher than those reported for the population sampled in 1992. 4. Isotope mixing models predicted that these changes in resource assimilation were owing to the replacement of rainbow smelt (Osmerus mordax) by round goby (Neogobius melanostomus) in lake trout diet and increased reliance on carbon resources derived from nearshore production. This contrasts with the historical situation in Lake Ontario where δ¹³C values of the lake trout population were dominated by a reliance on offshore carbon production. 5. These results indicate a reduced capacity of the Lake Ontario offshore food web to support the energetic requirements of lake trout and that this top predator has become increasingly reliant on prey resources that are derived from nearshore carbon pathways.     

Tidal geomorphology affects phytoplankton at the transition from forested streams to tidal rivers

1. Coastal rivers can have long tidally influenced reaches that are affected by tides but do not contain saline water. These tidal freshwater reaches have steep geomorphic gradients where the river transitions from narrow, heavily shaded streams to wide, unshaded channels. The influence of these gradients on river ecosystem production is poorly understood. 2. We characterised gradients in irradiance, geomorphology, water clarity and chlorophyll a along 9‐ to 16‐km tidal freshwater reaches of the Newport and White Oak Rivers in North Carolina, USA, and examined the effect of nutrient enrichment on phytoplankton growth in the Newport River. Underwater irradiance was modelled at 2–4 week intervals along both rivers using measurements of the above‐canopy irradiance, canopy cover, water column light attenuation (K_d) and water depth. Suspended material (TSS), dissolved organic carbon (DOC) and chlorophyll a were sampled at 2‐week interval at five sites on the Newport River and on four dates at four sites on the White Oak River over the course of one year. 3. Phytoplankton nutrient limitation was assessed at three locations along the tidal gradient. River water was collected during March, April, June and October, and incubated in 10‐L plastic outdoor containers under ambient water temperature and sunlight. Additions of inorganic nitrogen and phosphorus served as treatments; growth rate during the 4 days of incubation was calculated from the change in chlorophyll a concentration over time. 4. Canopy cover decreased from more than 90% to <10% over the length of both tidal freshwater rivers. Water column irradiance and phytoplankton biomass increased as tree canopy cover decreased and channel width increased. Channel width exceeded predictions for non‐tidal rivers by threefold because of tidal influence. TSS and DOC decreased significantly along the length of the Newport River, but no significant gradients were observed in the White Oak River. K_d did not vary along the tidal gradient of either river. 5. Mesocosm experiments indicated that inorganic nitrogen and phosphorus enhanced the growth of phytoplankton advected from the non‐tidal river into the tidal freshwater river during spring and summer. Phytoplankton in the tidal freshwater reach were generally not nutrient limited. 6. Tidal hydrology (in the absence of saltwater) directly affected the morphology of the channel and indirectly affected biological growth and production. The significant increase in river width, irradiance and phytoplankton biomass distinguished these tidal freshwater ecosystems from their upstream (non‐tidal fluvial) counterparts, while the strong influence of riparian shading distinguished them from the saline estuaries downstream. Future development of ecosystem and biogeochemical models for tidal freshwater rivers will benefit from the linkages between geomorphology and biological processes identified here.     

Lipoteichoic acid is an important microbe-associated molecular pattern of Lactobacillus rhamnosus GG

Background

Receptors with a single transmembrane (TM) domain are essential for the signal transduction across the cell membrane. NMR spectroscopy is a powerful tool to study structure of the single TM domain. The expression and purification of a TM domain in Escherichia coli (E.coli) is challenging due to its small molecular weight. Although ketosteroid isomerase (KSI) is a commonly used affinity tag for expression and purification of short peptides, KSI tag needs to be removed with the toxic reagent cyanogen bromide (CNBr).

Result

The purification of the TM domain of p75 neurotrophin receptor using a KSI tag with the introduction of a thrombin cleavage site is described herein. The recombinant fusion protein was refolded into micelles and was cleaved with thrombin. Studies showed that purified protein could be used for structural study using NMR spectroscopy.

Conclusions

These results provide another strategy for obtaining a single TM domain for structural studies without using toxic chemical digestion or acid to remove the fusion tag. The purified TM domain of p75 neurotrophin receptor will be useful for structural studies.     

Effects of synthetic cohesin-containing scaffold protein architecture on binding dockerin-enzyme fusions on the surface of Lactococcus lactis

Background

In the last years, the biotechnological production of platform chemicals for fuel components has become a major focus of interest. Although ligno-cellulosic material is considered as suitable feedstock, the almost inevitable pretreatment of this recalcitrant material may interfere with the subsequent fermentation steps. In this study, the fungus Ustilago maydis was used to produce itaconic acid as platform chemical for the synthesis of potential biofuels such as 3-methyltetrahydrofuran. No studies, however, have investigated how pretreatment of ligno-cellulosic biomass precisely influences the subsequent fermentation by U. maydis. Thus, this current study aims to first characterize U. maydis in shake flasks and then to evaluate the influence of three exemplary pretreatment methods on the cultivation and itaconic acid production of this fungus. Cellulose enzymatically hydrolysed in seawater and salt-assisted organic-acid catalysed cellulose were investigated as substrates. Lastly, hydrolysed hemicellulose from fractionated beech wood was applied as substrate.

Results

U. maydis was characterized on shake flask level regarding its itaconic acid production on glucose. Nitrogen limitation was shown to be a crucial condition for the production of itaconic acid. For itaconic acid concentrations above 25 g/L, a significant product inhibition was observed. Performing experiments that simulated influences of possible pretreatment methods, U. maydis was only slightly affected by high osmolarities up to 3.5 osmol/L as well as of 0.1 M oxalic acid. The production of itaconic acid was achieved on pretreated cellulose in seawater and on the hydrolysed hemicellulosic fraction of pretreated beech wood.

Conclusion

The fungus U. maydis is a promising producer of itaconic acid, since it grows as single cells (yeast-like) in submerged cultivations and it is extremely robust in high osmotic media and real seawater. Moreover, U. maydis can grow on the hemicellulosic fraction of pretreated beech wood. Thereby, this fungus combines important advantages of yeasts and filamentous fungi. Nevertheless, the biomass pretreatment does indeed affect the subsequent itaconic acid production. Although U. maydis is insusceptible to most possible impurities from pretreatment, high amounts of salts or residues of organic acids can slow microbial growth and decrease the production. Consequently, the pretreatment step needs to fit the prerequisites defined by the actual microorganisms applied for fermentation.     

Clinical features and predictors for disease natural progression in adults with Pompe disease: a nationwide prospective observational study

Background

Due partly to physicians’ unawareness, many adults with Pompe disease are diagnosed with great delay. Besides, it is not well known which factors influence the rate of disease progression, and thus disease outcome. We delineated the specific clinical features of Pompe disease in adults, and mapped out the distribution and severity of muscle weakness, and the sequence of involvement of the individual muscle groups. Furthermore, we defined the natural disease course and identified prognostic factors for disease progression.

Methods

We conducted a single-center, prospective, observational study. Muscle strength (manual muscle testing, and hand-held dynamometry), muscle function (quick motor function test), and pulmonary function (forced vital capacity in sitting and supine positions) were assessed every 3–6 months and analyzed using repeated-measures ANOVA.

Results

Between October 2004 and August 2009, 94 patients aged between 25 and 75 years were included in the study. Although skeletal muscle weakness was typically distributed in a limb-girdle pattern, many patients had unfamiliar features such as ptosis (23%), bulbar weakness (28%), and scapular winging (33%). During follow-up (average 1.6 years, range 0.5-4.2 years), skeletal muscle strength deteriorated significantly (mean declines of ?1.3% point/year for manual muscle testing and of ?2.6% points/year for hand-held dynamometry; both p<0.001). Longer disease duration (>15 years) and pulmonary involvement (forced vital capacity in sitting position <80%) at study entry predicted faster decline. On average, forced vital capacity in supine position deteriorated by 1.3% points per year (p=0.02). Decline in pulmonary function was consistent across subgroups. Ten percent of patients declined unexpectedly fast.

Conclusions

Recognizing patterns of common and less familiar characteristics in adults with Pompe disease facilitates timely diagnosis. Longer disease duration and reduced pulmonary function stand out as predictors of rapid disease progression, and aid in deciding whether to initiate enzyme replacement therapy, or when.

     

Registered Pesticides and Citrus Terpenes as Blackbird Repellents for Rice

Abstract: Nonlethal management alternatives are needed to minimize bird depredation of agricultural crops. We conducted 8 caged feeding tests and 2 field studies to evaluate 2 registered fungicides (GWN-4770, Gowan Company, Yuma, AZ; Quadris®, Syngenta Crop Protection, Greensboro, NC), a neem oil insecticide (Aza-Direct®, Gowan Company), and a novel terpene formulation (Gander Gone, Natural Earth Products, Winter Springs, FL) as avian repellents. For all candidate repellents, red-winged blackbirds (Agelaius phoeniceus) discriminated between untreated and treated rice during preference-testing in captivity. We observed a positive concentration-response relationship among birds offered rice treated with 2,500 ppm, 5,000 ppm, 7,500 ppm, 11,000 ppm, or 22,000 ppm GWN-4770. Relative to pretreatment, blackbirds consumed 34% and 77% less rice treated with 11,000 ppm and 22,000 ppm GWN-4770, respectively, during the concentration-response test. Maximum repellency among other tested compounds was <40% during the concentration-response test. Blackbirds consumed 28% of rice seeds treated with 20,000 ppm GWN-4770 and 68% of untreated seeds broadcast within rice fields in southwestern Louisiana, USA. We observed 50% fewer unprotected seedlings than those treated with 10,000 ppm GWN-4770 within a drill-seeded rice field in southeastern Missouri, USA. The manufacturer subsequently applied for a United States patent for the active ingredient of GWN-4770 as an avian repellent. Although additional registration criteria and formulation optimization must be satisfied to enable the commercial availability of GWN-4770 as an avian repellent, additional efficacy studies of GWN-4770 and other promising repellents under extended field conditions are warranted for protection of newly planted and ripening rice.