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Positive selection driving the evolution of a gene of male reproduction, Acp26Aa, of Drosophila: II. Divergence versus polymorphism 总被引:5,自引:1,他引:4
The evolution of the gene for a male ejaculatory protein, Acp26Aa, has been
shown to be driven by positive selection when nonsibling species in the
Drosophila melanogaster subgroup are compared. To know if selection has
been operating in the recent past and to understand the details of its
dynamics, we obtained DNA sequences of Acp26Aa and the nearby Acp26Ab gene
from 39 D. melanogaster chromosomes. Together with the 10 published
sequences, we analyzed 49 sequences from five populations in four
continents. The southern African population is somewhat differentiated from
all other populations, but its nucleotide diversity is lower at these two
loci. We find the following results for Acp26Aa: (1) The R: S (replacement
: silent changes) ratio is significantly higher in the between-species
comparisons than in the within-species data by the McDonald and Kreitman
test. Positive selection is probably responsible for the excess of amino
acid replacements between species. (2) However, within-species nucleotide
diversity is high. Neither the Tajima test nor the Fu and Li test indicates
a reduction in nucleotide diversity due to positive selection in the recent
past. (3) The newly derived nucleotides in D. melanogaster are at high
frequency significantly more often than predicted by the neutral
equilibrium. Since the nearby Acp26Ab gene does not show these patterns,
these observations cannot be attributed to the characteristics of this
chromosomal region. We suggest that positive selection is active, but may
be weak, for each amino acid change in the Acp26Aa gene.
相似文献
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B Krishnamachary MF Penet S Nimmagadda Y Mironchik V Raman M Solaiyappan GL Semenza MG Pomper ZM Bhujwalla 《PloS one》2012,7(8):e44078
Background
The CD44 transmembrane glycoproteins play multifaceted roles in tumor progression and metastasis. CD44 expression has also been associated with stem-like breast cancer cells. Hypoxia commonly occurs in tumors and is a major cause of radiation and chemo-resistance. Hypoxia is known to inhibit differentiation and facilitates invasion and metastasis. Here we have investigated the effect of hypoxia on CD44 and two of its isoforms in MDA-MB-231 and SUM-149 triple negative human breast cancer cells and MDA-MB-231 tumors using imaging and molecular characterization.Methods and Findings
The roles of hypoxia and hypoxia inducible factor (HIF) in regulating the expression of CD44 and its variant isoforms (CD44v6, CD44v7/8) were investigated in human breast cancer cells, by quantitative real-time polymerase chain reaction (qRT-PCR) to determine mRNA levels, and fluorescence associated cell sorting (FACS) to determine cell surface expression of CD44, under normoxic and hypoxic conditions. In vivo imaging studies with tumor xenografts derived from MDA-MD-231 cells engineered to express tdTomato red fluorescence protein under regulation of hypoxia response elements identified co-localization between hypoxic fluorescent regions and increased concentration of 125I-radiolabeled CD44 antibody.Conclusions
Our data identified HIF-1α as a regulator of CD44 that increased the number of CD44 molecules and the percentage of CD44 positive cells expressing variant exons v6 and v7/8 in breast cancer cells under hypoxic conditions. Data from these cell studies were further supported by in vivo observations that hypoxic tumor regions contained cells with a higher concentration of CD44 expression. 相似文献158.
Poongodi Geetha-Loganathan Suresh Nimmagadda Bodo Christ Ruijin Huang Martin Scaal 《BMC developmental biology》2010,10(1):32
Background
Pattern formation of the limb skeleton is regulated by a complex interplay of signaling centers located in the ectodermal sheath and mesenchymal core of the limb anlagen, which results, in the forelimb, in the coordinate array of humerus, radius, ulna, carpals, metacarpals and digits. Much less understood is why skeletal elements form only in the central mesenchyme of the limb, whereas muscle anlagen develop in the peripheral mesenchyme ensheathing the chondrogenic center. Classical studies have suggested a role of the limb ectoderm as a negative regulator of limb chondrogenesis. 相似文献159.
160.
The regulation of endogenous level of ascorbic acid in soybean (Glycine max L. Merrill) by cryptic red light signal (CRS) was studied. CRS is a cellular signal induced by red light pre-irradiation that amplifies the action of phytochrome, and is known to enhance anthocyanin synthesis in sorghum. A phytochrome-enhanced endogenous level of ascorbic acid in soybean seedlings was amplified by CRS. The lifetime of CRS was from 0 to 2h and the peak of enhancement was between 16 and 24h of dark incubation after the end of treatment. 相似文献