Effects of prenatal exposure to diclofenac sodium and saline on the optic nerve of 4- and 20-week-old male rats: a stereological and histological study

We investigated the effects of diclofenac sodium (DS) on development of the optic nerve in utero. Pregnant female rats were separated into three groups: control, saline treated and DS treated. Offspring of these animals were divided into 4-week-old and 20-week-old groups. At the end of the 4th and 20th weeks of postnatal life, the animals were sacrificed, and right optic nerves were excised and sectioned for ultrastructural and stereological analyses. We demonstrated that both DS and saline produced structural and morphometric changes in the total axon number and density of axons, but decreased the myelin sheath thickness in male optic nerves. All ultrastructural and morphometric features were well developed in 20-week-old rats. We showed that development of the optic nerve continues during the early postnatal period and that some compensation for exposure to deleterious agents in utero may occur during early postnatal life.     

Network analysis of temporal functionalities of the gut induced by perturbations in new-born piglets

Background

Evidence is accumulating that perturbation of early life microbial colonization of the gut induces long-lasting adverse health effects in individuals. Understanding the mechanisms behind these effects will facilitate modulation of intestinal health. The objective of this study was to identify biological processes involved in these long lasting effects and the (molecular) factors that regulate them. We used an antibiotic and the same antibiotic in combination with stress on piglets as an early life perturbation. Then we used host gene expression data from the gut (jejunum) tissue and community-scale analysis of gut microbiota from the same location of the gut, at three different time-points to gauge the reaction to the perturbation. We analysed the data by a new combination of existing tools. First, we analysed the data in two dimensions, treatment and time, with quadratic regression analysis. Then we applied network-based data integration approaches to find correlations between host gene expression and the resident microbial species.

Results

The use of a new combination of data analysis tools allowed us to identify significant long-lasting differences in jejunal gene expression patterns resulting from the early life perturbations. In addition, we were able to identify potential key gene regulators (hubs) for these long-lasting effects. Furthermore, data integration also showed that there are a handful of bacterial groups that were associated with temporal changes in gene expression.

Conclusion

The applied systems-biology approach allowed us to take the first steps in unravelling biological processes involved in long lasting effects in the gut due to early life perturbations. The observed data are consistent with the hypothesis that these long lasting effects are due to differences in the programming of the gut immune system as induced by the temporary early life changes in the composition and/or diversity of microbiota in the gut.

Electronic supplementary material

The online version of this article (doi:10.1186/s12864-015-1733-8) contains supplementary material, which is available to authorized users.     

The selection for early and late pupariation in the flesh-fly, Sarcophaga argyrostoma, and its effect on the incidence of pupal diapause

ABSTRACT. Artificial selection from the first and last larvae of Sarcophaga argyrostoma (Robineau-Desvoidy) to form puparia gives rise to two strains, 'fast' (F) and 'slow' (S), 'fast' pupariating about 3 days earlier than 'slow' in continuous light, 25°C. The two strains differ only in the time from larval wandering to pupariation; other aspects of development are identical. In light-dark cycles (1°C) the distributions of pupariation times in 'fast' are unimodal and nearly normal, whereas those for 'slow' are multimodal and with a marked skew, especially in short daylengths. Pupariation times in 'fast'×'slow' hybrids, an F₂ generation, and a backcross [(F×S)×S] are intermediate between 'fast' and 'slow' but incline towards 'fast'. It is concluded that control of pupariation time is polygenic, and that 'slow' contain considerable residual variation. When compared with the unselected stock, 'fast' and 'slow' both produce a reduced incidence of pupal diapause in short daylengths, and 'fast' show a shorter critical daylength. These effects are interpreted in terms of a modified version of Gibbs' (1975) photoperiodic 'counter' hypothesis.     

1,000 structures and more from the MCSG

Background  

The Midwest Center for Structural Genomics (MCSG) is one of the large-scale centres of the Protein Structure Initiative (PSI). During the first two phases of the PSI the MCSG has solved over a thousand protein structures. A criticism of structural genomics is that target selection strategies mean that some structures are solved without having a known function and thus are of little biomedical significance. Structures of unknown function have stimulated the development of methods for function prediction from structure.     

Uric acid deposits in symbiotic marine algae

The symbiosis between cnidarians and dinoflagellate algae is not understood at the cell or molecular level, yet this relationship is responsible for the formation of thousands of square kilometres of coral reefs. We have investigated the nature of crystalline material prominent within marine algal symbionts of Aiptasia sp. anemones. This material, which has historically been considered to be calcium oxalate, is shown to be uric acid. We demonstrate that these abundant uric acid stores can be mobilized rapidly, thereby allowing the algal symbionts to flourish in an otherwise N-poor environment. This is the first report of uric acid accumulation by symbiotic marine algae. These data provide new insight and considerations for understanding the physiological basis of algal symbioses, and represent a new and previously unconsidered aspect of N metabolism in cnidarian, and a variety of other, marine symbioses.     

Grazing management influences the subsidy of terrestrial prey to trout in central Rocky Mountain streams (USA)

1. Research in forest and grassland ecosystems indicates that terrestrial invertebrates that fall into streams can be an important prey resource for fish, providing about 50% of their annual energy and having strong effects on growth and abundance. However, the indirect effects of land uses like cattle grazing on this important prey subsidy for stream salmonids are unclear. 2. During summer 2007, we compared the effects of three commonly used grazing systems on terrestrial invertebrate inputs to streams in northern Colorado and their use by trout. Cattle graze individual pastures for about 120 days under traditional season‐long grazing (SLG), about 35–45 days under simple rotational grazing and 10–20 days under intensive rotational grazing in this region. We also compared these effects to a fourth group of sites grazed only by wildlife (i.e. no livestock use). 3. Overall, rotational grazing management (either simple or intensive), resulted in more riparian vegetation, greater inputs of terrestrial invertebrates, greater biomass of terrestrial invertebrate prey in trout diets, a higher input compared to trout metabolic demand and more trout biomass than SLG. However, these differences were frequently not statistically significant owing to high variability, especially for trout diets and biomass. 4. Despite the inherent variability, riparian vegetation and terrestrial invertebrates entering streams and in trout diets at sites managed for rotational grazing were similar to sites managed for wildlife grazing only. 5. These results indicate that rotational grazing systems can be effective for maintaining levels of terrestrial invertebrate subsidies to streams necessary to support robust trout populations. However, factors influencing the effect of riparian grazing on stream subsidies are both spatially variable and complex, owing to differences in microclimate, invertebrate and plant populations and the efforts of ranchers to tailor grazing systems to specific riparian pastures.     

Evolving DNA motifs to predict GeneChip probe performance

Background  

Affymetrix High Density Oligonuclotide Arrays (HDONA) simultaneously measure expression of thousands of genes using millions of probes. We use correlations between measurements for the same gene across 6685 human tissue samples from NCBI's GEO database to indicated the quality of individual HG-U133A probes. Low correlation indicates a poor probe.