Evidence suggesting preadaptation to domestication throughout the small Felidae

One obstacle in the development of a coherent theoretical framework for the process of animal domestication is the rarity of domestication events in human history. It is unclear whether: (1) many species are suitable for domestication, the limiting factor being the requirement of people for new domestic animals; or (2) very few species are preadapted for domestication. Comparisons between 16 species and subspecies of small cats (Felidae) kept in zoos indicated that affiliative behaviour towards people, an important preadaptation to domestication, is widely, if patchily, distributed throughout this taxon, and is not concentrated in species closely related to the domestic cat, Felis silvestris catus . The highest proportion of individuals showing affiliative behaviour was found in the ocelot lineage, which is estimated to have diverged from the rest of the Felidae between 5 and 13 Mya. The domestication of F. silvestris alone among felids is therefore likely to have been the result of a specific set of human cultural events and requirements in the Egyptian New Kingdom, rather than the consequence of a unique tendency to tame-ness in this subspecies.© 2002 The Linnean Society of London, Biological Journal of the Linnean Society , 75 , 2002, 361–366.     

Pollination biology of the sclerophyllous shrub Pultenaea villosa Willd. (Fabaceae) in southeast Queensland, Australia

The pollination biology of the common shrub Pultenaea villosa Willd. was examined in a subtropical dry sclerophyll forest in eastern Australia. We determined floral phenology and morphology, the timing of stigma receptivity and anther dehiscence, nectar availability, the plant breeding system, and flower visitors. The shrub's flowers are typical zygomorphic pea flowers with hidden floral rewards and reproductive structures. These flowers require special manipulation for insect access. A range of insects visited the flowers, although bees are predicted to be the principle pollinators based on their frequency on the flowers and their exclusive ability to operate the wing and keel petals to access the reproductive structures. Nectar and pollen are offered as rewards and were actively collected by bees. Nectar is offered to visitors in minute amounts at the base of the corolla. In Toohey Forest, P. villosa flowers in spring and is the most abundant floral resource in the understory of the forest at this time. The breeding system experiment revealed that P. villosa requires outcrossing for high levels of seed set and that the overlap of stigma receptivity and pollen dehiscence within the flower suggests the potential for self-incompatibility.     

Phenotypic correlates of Clock gene variation in a wild blue tit population: evidence for a role in seasonal timing of reproduction

The timing of reproduction in birds varies considerably within populations and is often under strong natural selection. Individual timing within years is dependent on a range of environmental factors in addition to having an additive genetic basis. In vertebrates, an increasing amount is known about the molecular basis for variation in biological timing. The Clock gene includes a variable poly-glutamine (poly-Q) repeat influencing behaviour and physiology. Recent work in birds, fish and insects has demonstrated associations between Clock genotype and latitude across populations, which match latitudinal variation in breeding time. In this study, we investigated the phenotypic correlates of variation in Clock genotype within a single blue tit Cyanistes caeruleus population over two successive breeding seasons. In females, but not in males, we observed a general trend for birds with fewer poly-Q repeats to breed earlier in the season. Incubation duration was shorter in both females and males with fewer repeats at the polymorphic Clock locus. Poly-Q Clock allele-frequency was homogenously distributed within the study population and did not exhibit any consistent environment-related variation. We further tested for effects of Clock genotype on reproductive success and survival, and found that females with fewer poly-Q repeats produced a higher number of fledged offspring. Our results therefore suggest that (i) selection in females, but not in males, for fewer poly-Q repeats may be operating, (ii) the across–population associations in timing of breeding involving this locus could be linked to variation within populations, and (iii) the Clock gene might be involved in local adaptation to seasonal environments.     

Female philopatry in coastal basins and male dispersion across the North Atlantic in a highly mobile marine species, the sperm whale (Physeter macrocephalus)

The mechanisms that determine population structure in highly mobile marine species are poorly understood, but useful towards understanding the evolution of diversity, and essential for effective conservation and management. In this study, we compare putative sperm whale populations located in the Gulf of Mexico, western North Atlantic, Mediterranean Sea and North Sea using mtDNA control region sequence data and 16 polymorphic microsatellite loci. The Gulf of Mexico, western North Atlantic and North Sea populations each possessed similar low levels of haplotype and nucleotide diversity at the mtDNA locus, while the Mediterranean Sea population showed no detectable mtDNA diversity. Mitochondrial DNA results showed significant differentiation between all populations, while microsatellites showed significant differentiation only for comparisons with the Mediterranean Sea, and at a much lower level than seen for mtDNA. Samples from either side of the North Atlantic in coastal waters showed no differentiation for mtDNA, while North Atlantic samples from just outside the Gulf of Mexico (the western North Atlantic sample) were highly differentiated from samples within the Gulf at this locus. Our analyses indicate a previously unknown fidelity of females to coastal basins either side of the North Atlantic, and suggest the movement of males among these populations for breeding.     

Geographical variation in genetic structure of an Atlantic Coastal Forest frog reveals regional differences in habitat stability

Climatic oscillations throughout the Pleistocene combined with geological and topographic complexity resulted in extreme habitat heterogeneity along the Atlantic coast of Brazil. Inferring how these historic landscape patterns have structured the current diversity of the region's biota is important both for our understanding of the factors promoting diversification, as well as the conservation of this biodiversity hotspot. Here we evaluate potential historical scenarios of diversification in the Atlantic Coastal Forest of Brazil by investigating the population genetic structure of a frog endemic to the region. Using mitochondrial and nuclear sequences, we generated a Bayesian population-level phylogeny of the Thoropa miliaris species complex. We found deep genetic divergences among five geographically distinct clades. Southern clades were monophyletic and nested within paraphyletic northern clades. Analyses of historical demographic patterns suggest an overall north to south population expansion, likely associated with regional differences in habitat stability during the Pliocene and early Pleistocene. However, genetic structure among southern populations is less pronounced and likely represents more recent vicariant events resulting from Holocenic sea-level oscillations. Our analyses corroborate that the Atlantic Coastal Forest has been a biogeographically dynamic landscape and suggest that the high diversity of its fauna and flora resulted from a combination of climatic and geologic events from the Pliocene to the present.     

Changes in soil organic carbon under biofuel crops

One potentially significant impact of growing biofuel crops will be the sequestration or release of carbon (C) in soil. Soil organic carbon (SOC) represents an important C sink in the lifecycle C balances of biofuels and strongly influences soil quality. We assembled and analyzed published estimates of SOC change following conversion of natural or agricultural land to biofuel crops of corn with residue harvest, sugarcane, Miscanthus x giganteus , switchgrass, or restored prairie. We estimated SOC losses associated with land conversion and rates of change in SOC over time by regressing net change in SOC relative to a control against age since establishment year. Conversion of uncultivated land to biofuel agriculture resulted in significant SOC losses – an effect that was most pronounced when native land was converted to sugarcane agriculture. Corn residue harvest (at 25–100% removal) consistently resulted in SOC losses averaging 3–8 Mg ha⁻¹ in the top 30 cm, whereas SOC accumulated under all four perennial grasses, with SOC accumulation rates averaging <1 Mg ha⁻¹ yr⁻¹ in the top 30 cm. More intensive harvests led to decreased C gains or increased C losses – an effect that was particularly clear for residue harvest in corn. Direct or indirect conversion of previously uncultivated land for biofuel agriculture will result in SOC losses that counteract the benefits of fossil fuel displacement. Additionally, SOC losses under corn residue harvest imply that its potential to offset C emissions may be overestimated, whereas SOC sequestration under perennial grasses represents an additional benefit that has rarely been accounted for in life cycle analyses of biofuels.     

Experimental evidence for female choice and energetic costs of male tail elongation in red-collared widowbirds

The black nuptial plumage of the highly polygynous male red‐collared widowbird (Euplectes ardens) comprises a red carotenoid‐based collar patch and a long graduated tail (c. 22 cm). Tail length was the strongest predictor of male mating success in a previous selection analysis, motivating this experimental test of the relative importance of tail plumes in male contest competition and female choice. Males were assigned to either a short (12.5 cm) or control (20 cm) tail manipulation prior to territory establishment. Male contest competition was unaffected by the tail treatments as the shortened‐ and control‐tailed males were equally successful in acquiring territories of similar size and quality. In contrast, however, although the longer‐tailed control males spent less time in flight and courtship displays, they attracted significantly more prospecting and nearly three times as many nesting females to their territories compared to the short‐tailed males. In further support of tail length as the primary mate choice cue, none of the other measured and potential female cues (e.g. body size, collar colorimetrics, territorial behaviours or territory quality) influenced male reproductive success. In addition to potentially increasing detectability (‘signal efficacy’), the long tail is also a likely indicator of male quality (‘signal content’). Despite the higher activities of short‐tailed males, control‐tailed males showed a steeper decline in condition (relative body mass) during the breeding season. Furthermore, both short‐ and control‐tailed residents lost more condition than did the short‐ and control‐treated floaters (males not establishing territories), suggesting an interaction between tail length and the costs of territory acquisition, defence and courtship displays. These results confirm the role of mate choice and honest quality advertising as the main selection pressures behind elongated tails in widowbirds. © 2005 The Linnean Society of London, Biological Journal of the Linnean Society, 2005, 86 , 35–43.     

Phosphorus Sequestration in Lake Sediment with Iron Mine Tailings

Internal phosphorus loading can lead to eutrophication in lakes when anoxic sediments release bioavailable phosphorus into the water column. In laboratory experiments, iron mine tailings helped to sequester phosphorus in sediment from a eutrophic lake. Phosphorus release from the sediments after extraction with distilled water or 0.02 N H ₂ SO ₄ was significantly reduced when mine tailings were added (1:1 w/w), even when the system was anaerobic (～ 1 mg O ₂ /L). The degree of sequestration was enhanced when glucose (1% w/w) was added to stimulate the growth of microorganisms, suggesting that the process was microbially mediated. We suggest that oxidized iron in the mine tailings served as an electron sink for microbial respiration via dissimilatory Fe³⁺ reduction. The reduced iron released into solution sequestered phosphorus, either as it re-oxidized and formed hydrous ferric oxide complexes containing phosphorus (HFO-P), or through precipitation. Since mine tailings are inexpensive, they may prove useful for preventing phosphorus from entering surface waters, as well as reducing internal phosphorus loading.     

Relationship between starch degradation and carbon demand for maintenance and growth in Arabidopsis thaliana in different irradiance and temperature regimes

Experiments were designed to compare the relationship between starch degradation and the use of carbon for maintenance and growth in Arabidopsis in source‐limited and sink‐limited conditions. It is known that starch degradation is regulated by the clock in source‐limited plants, which degrade their starch in a linear manner such that it is almost but not completely exhausted at dawn. We asked whether this response is maintained under an extreme carbon deficit. Arabidopsis was subjected to a sudden combination of a day of low irradiance, to decrease starch at dusk, and a warm night. Starch was degraded in a linear manner through the night, even though the plants became acutely carbon starved. We conclude that starch degradation is not increased to meet demand in carbon‐limited plants. This network property will allow stringent control of starch turnover in a fluctuating environment. In contrast, in sink‐limited plants, which do not completely mobilize their starch during the night, starch degradation was accelerated in warm nights to meet the increased demand for maintenance and growth. Across all conditions, the rate of growth at night depends on the rate of starch degradation, whereas the rate of maintenance respiration decreases only when starch degradation is very slow.