When have we looked hard enough? A novel method for setting minimum survey effort protocols for flora surveys

There is now a substantial body of literature documenting the detectability of plants and animals under standard survey conditions. Despite the evidence that many flora and fauna species have detection probabilities of less than one, it is still the default assumption of most environmental impact assessment processes that if a species is present, it will be detected. Here we briefly review a number of existing studies that have estimated the survey effort necessary to detect animal species, based on what is known about their detection rates in standard surveys. We then propose a novel method, based on failure‐time analysis, for quantifying the detectability of and determining appropriate survey effort for plant species during flora surveys. We provide computer code for implementing the method in the Bayesian freeware WinBUGS. Methods for estimating detectability can be used to inform minimum survey requirements and have important applications in environmental impact assessment and monitoring.     

Contamination on sandflats and the decoupling of linked ecological functions

Benthic macrofauna can influence inputs and transformations of energy and matter in estuaries, affecting both the stocks of vital materials (e.g. carbon, oxygen) and the rates of key processes (e.g. organic matter decomposition, nutrient uptake). Although a number of studies have identified shifts in functional groups or biological traits in relation to anthropogenic stressors, there have been few field‐based assessments of changes in functioning associated with stress gradients. We used a comparative experimental approach to investigate functioning on two sandflats with differing exposures to urban contaminants. Apart from significant differences in sediment contaminant concentrations (43.2 ± 1.8 mg kg^?1 Zn and 15.6 ± 0.9 mg kg^?1 Pb at the Pollen site; 17.7 ± 0.7 mg kg^?1 Zn and 7.9 ± 0.9 mg kg^?1 Pb at the Waiheke site), the two sandflats were readily comparable: both had similar sediment grain size distributions and were dominated by the same macrofaunal species; and both were in non‐eutrophic New Zealand marine reserves with low ambient sediment organic matter content. To better understand the effects of contaminants on biologically mediated transformations of organic matter into inorganic nutrients, we manipulated sediment organic matter content and macrofaunal abundance in standardized treatments at each site. Fluxes of oxygen and ammonium, which are linked to key sandflat processes such as organic matter decomposition and benthic photosynthesis, were measured as response variables 1 week after the experimental manipulations. We predicted more efficient organic matter processing on the uncontaminated flat and thus expected to see elevated ammonium efflux in response to organic enrichment treatments at this site. Higher rates of benthic photosynthesis were predicted for plots with higher ammonium efflux, as ammonium is a readily utilizable form of limiting inorganic nitrogen. We documented significant positive relationships between ammonium uptake and benthic primary production on the uncontaminated flat, but weaker/insignificant relationships at the contaminated site. Our data were consistent with theories of increased variability and a decoupling of system processes with increasing amounts of stress.     

Size variation facilitates population divergence but does not explain it all: an example study from a widespread African monkey

Subspecific variation is widespread in vertebrates. Within Africa, several mammals have extensive geographic distributions with attendant morphological, ecological, and behavioural variations, which are often used to demarcate subspecies. In the present study, we use a primate species, the vervet monkey, Cercopithecus aethiops, as a case study for intraspecific divergence in widespread mammals, assessed through hard tissue morphology. We examine intraspecific differences in size, shape, and non‐allometric shape from a taxonomic perspective, and discuss the macroevolutionary implications of findings from microevolutionary analyses of geographic variation. A geometric morphometric approach was used, employing 86 three‐dimensional landmarks of almost 300 provenanced crania. Many of the taxonomic differences in skull morphology between vervet populations appear to be related to geographic proximity, with subspecies at opposite extremes of a west‐to‐east axis showing greatest divergence, and populations from central and south Africa being somewhat intermediate. The classification rate from discriminant analyses was lower than that observed in other African primate radiations, including guenons as a whole and red colobus. Nonetheless, taxonomic differences in shape were significant and not simply related to either geography or size. Thus, although shifts in size may be an important first step in adaptation and diversification, with size responding more quickly than shape to environmental change, the six vervet taxa currently recognized (either as species or subspecies) are not simply allometrically scaled versions of one another and are probably best viewed as subspecies. Holding allometry constant when examining inter‐population differences in shape may thus help to reveal the early stages of evolutionary divergence. The vervet case study presented here hence has relevance for future studies examining intraspecific differentiation in other large mammals, particularly through the methods used to identify small but biologically meaningful divergence, with attendant implications for conservation planning. © 2010 The Linnean Society of London, Biological Journal of the Linnean Society, 2010, 101 , 823–843.     

Wintering site fidelity and movement patterns of Western Sandpipers Calidris mauri in the San Francisco Bay estuary

Western Sandpipers Calidris mauri are the most numerous shorebird species in the San Francisco Bay estuary during winter. A sample of 106 Western Sandpipers was captured in mist nets and radio-marked with 1-g transmitters to examine their wintering site fidelity and movements. Differences in distances moved, home range extent and core area size were examined by age, sex, season, site, time of day and tide. All birds remained in the south San Francisco Bay region during winter and exhibited strong site fidelity, with a mean home range of 22.0 km² or only 8% of the study area. First-year birds had larger home ranges (26.6 ± 3.6 km²) than adults (17.2 ± 2.5 km²) in winter, but home range sizes of males and females were not significantly different in any period. Home range sizes were similar between seasons, but core areas were smaller in spring (6.3 ± 1.2 km²) than in early (9.6 ± 4.0 km²) or late (11.6 ± 1.6 km²) winter. Movements and home range size were similar for radio-marked birds located during day and night. The high degree of regional and local site fidelity demonstrated that the mixture of natural mud fiats and artificial salt ponds in southern San Francisco Bay provided sufficient resources for large wintering populations of Western Sandpipers.     

Vegetative morphology and trait correlations in 54 species of Commelinaceae

The morphospace of 54 species of Commelinaceae from nine genera was examined with simultaneous attention to constraints, adaptive hypotheses and relatedness. Eleven morphological traits, including leaf length and width, angle between the leaves and internode distances, were measured for each species and analysed by principal components analysis and nested analysis of variance. The results revealed a significant signal of relatedness in vegetative morphology; genus explained 20–50% of the variance in a single trait. The relationships between some traits are consistent with adaptive explanations. The findings are consistent with the prediction that evolution for optimal phyllotaxis should be relaxed as self‐shading decreases, and that light availability governs leaf size and branching patterns. Constraints potentially explain some trait correlations, and support was found for the hypothesis that structural constraints govern leaf size and internode size correlations. © 2008 The Linnean Society of London, Botanical Journal of the Linnean Society, 2008, 158 , 257–268.     

Trophic level asynchrony in rates of phenological change for marine,freshwater and terrestrial environments

Recent changes in the seasonal timing (phenology) of familiar biological events have been one of the most conspicuous signs of climate change. However, the lack of a standardized approach to analysing change has hampered assessment of consistency in such changes among different taxa and trophic levels and across freshwater, terrestrial and marine environments. We present a standardized assessment of 25 532 rates of phenological change for 726 UK terrestrial, freshwater and marine taxa. The majority of spring and summer events have advanced, and more rapidly than previously documented. Such consistency is indicative of shared large scale drivers. Furthermore, average rates of change have accelerated in a way that is consistent with observed warming trends. Less coherent patterns in some groups of organisms point to the agency of more local scale processes and multiple drivers. For the first time we show a broad scale signal of differential phenological change among trophic levels; across environments advances in timing were slowest for secondary consumers, thus heightening the potential risk of temporal mismatch in key trophic interactions. If current patterns and rates of phenological change are indicative of future trends, future climate warming may exacerbate trophic mismatching, further disrupting the functioning, persistence and resilience of many ecosystems and having a major impact on ecosystem services.     

In vitro and in vivo discrepancy in inducing apoptosis by mesenchymal stromal cells delivering membrane-bound tumor necrosis factor–related apoptosis inducing ligand in osteosarcoma pre-clinical models

Background

Osteosarcoma (OS) is the most frequent pediatric malignant bone tumor. OS patients have not seen any major therapeutic progress in the last 30 years, in particular in the case of metastatic disease, which requires new therapeutic strategies. The pro-apoptotic cytokine Tumor necrosis factor (TNF)–Related Apoptosis Inducing Ligand (TRAIL) can selectively kill tumor cells while sparing normal cells, making it a promising therapeutic tool in several types of cancer. However, many OS cell lines appear resistant to recombinant human (rh)TRAIL-induced apoptosis. We, therefore, hypothesized that TRAIL presentation at the membrane level of carrier cells might overcome this resistance and trigger apoptosis.