AQUASPLATCHE: a program to simulate genetic diversity in populations living in linear habitats

Classical models of structured populations do not apply well to species leaving in semilinear habitats such as freshwater fishes, since these habitats are intermediate between one‐dimensional and two‐dimensional stepping‐stone models. In order to investigate the genetic diversity of such populations, we have developed a new simulation program called aquasplatche . It starts by dividing a user‐defined vectorized network into segments of arbitrary length, each segment hosting a single deme. The program then proceeds by simulating the colonization of the environment from an arbitrary source, recording the evolution of the deme densities and the migration events between adjacent demes over time. This demographic history is then used to generate genetic data of population samples located in various segments of the network, using a backward coalescent framework. Different versions of aquasplatche are freely available on http://cmpg.unibe.ch/software/aquasplatche .     

Differentiation in populations of Hordeum spontaneum along a gradient of environmental productivity and predictability: life history and local adaptation

Reciprocal introduction of seeds and seedlings of wild barley, Hordeum spontaneum , originating in four different environments of Israel was used to: (1) test for local adaptation, (2) make inferences about environmental effects on life‐history and reproductive traits, and (3) identify trait combinations with recognizable ‘strategies’. The four populations examined represented the following environments: (1) desert ? low productivity and predictability, drought stress; (2) semi‐steppe batha ? moderate productivity and predictability; (3) grassland ? high productivity and predictability; and (4) mountain ? high productivity and predictability but with severe frost stress. Significant genotype‐by‐environment interactions were observed for yield and reproductive biomass, seedling biomass and percentage germinated and survived seeds, suggesting local ecotype adaptation. Increasing productivity and predictability of environment in respect to rainfall, without concomitant frost stress, was found to select for high reproductive biomass and large seeds, a high fraction of germinating seeds and high vigour of seedlings. The optimal strategy changes with increasing productivity and predictability and involves a trade‐off between seed size and number, with reduced yield but increased seed mass, consistent with competition selection (or K‐selection sensu MacArthur & Wilson (1967 )) type. No specific life‐history adaptations to predictable frost stress were detected for the mountain ecotype, but there was higher survival of seedlings in their indigenous (mountain) environment compared with other ecotypes. The latter appears to be a physiological adaptation to frost, which is consistent with selection for stress tolerance (or S‐selection sensu Grime (1977 )) type. The other stress factor, drought, which is very unpredictable in deserts, was associated with high seed dormancy, small seed size and low vigour of seedlings, but relatively high yield, which is consistent with a stress‐escape bet‐hedging strategy. © 2002 The Linnean Society of London, Biological Journal of the Linnean Society , 2002, 77 , 479–490.     

Long-term natal site-fidelity by immature lemon sharks (Negaprion brevirostris) at a subtropical island

Although many sharks begin their life confined in nursery habitats, it is unknown how rapidly they disperse away from their natal area once they leave the nursery. We examine this issue in immature lemon sharks ( Negaprion brevirostris ) from the time they leave the nursery (∼ age 3) at a subtropical island (Bimini, Bahamas), through to the onset of sexual maturity (∼ age 12). From 1995 to 2007 we tagged and genotyped a large fraction of the nursery-bound sharks at this location (0–3 years of age, N  = 1776 individuals). From 2003 to 2007 we sampled immature sharks aged from 3 to 11 years ( N  = 150) living around the island and used physical/genetic tag recaptures coupled with kinship analysis to determine whether or not each of these 'large immature sharks' was locally born. We show that many island-born lemon sharks remain close to their natal area for long periods (years) after leaving the nursery; more than half of the sampled sharks up to 135 cm total length (∼6 years old) were locally born. The fraction of locally born sharks gradually declined with increasing shark size, indicating that dispersal is relatively slow and does not primarily occur after sharks reach a threshold size. Local conservation measures (e.g. localized fishery closures, marine protected areas) can therefore help protect island-born lemon sharks even after they leave the nursery habitat.     

Differential nutrient extraction in the funnel web spider Agelena labyrinthica

Abstract. Agelena labyrinthica Clerck spiders were raised in the laboratory at three diet levels. Growth, reproduction and the pattern of nutrient extraction of each spider were monitored. The extraction of proteins, carbohydrates and lipids by each spider was analysed on three occasions, covering the immature and mature stages. More nutrients were extracted the less well-fed the spider, and females extracted more nutrients than did males. Nutrients were extracted most completely during early growth and, especially protein, by females in the reproductive phase. Protein was extracted more completely than lipids or carbohydrates. The relative amounts of the three nutrients extracted changed significantly with time, indicating that spiders are able to adjust their detailed feeding behaviour to their immediate needs. Field collections over the season showed that most spiders in the field grew approximately as those on the medium laboratory ration for most of the time.