Spectrophotometric kinetic study and analytical implications of the glucose oxidase-catalyzed reduction of [MIII(LL)2Cl2]+ complexes by d-glucose (M=Os and Ru, LL=2,2′-bipyridine and 1,10-phenanthroline type ligands)

 Glucose oxidase-catalyzed reduction of cis[M^III (LL)₂Cl₂]⁺ (M=Os and Ru) complexes to cis[M^II (LL)₂Cl₂] (LL=2,2′-bipyridine and 1,10-phenanthroline type ligands) by d-glucose is a first-order process in the complex and the enzyme in aqueous buffered solution. The reaction follows MichaelisMenten kinetics in d-glucose and the rate is independent of d-glucose concentration above 0.03 M. The reactivity decreases in the series [Ru(bpy)₂Cl₂]⁺ > [Os(phen)₂Cl₂]⁺ > [Os(4,4′-Me₂bpy)₂Cl₂]⁺ > [Os(4,7Me₂phen)₂Cl₂]⁺. The measured second-order rate constant for the oxidation of reduced glucose oxidase by [Os(phen)₂Cl₂]⁺ in air equals 1.2×10⁵ M^–1 s^–1 at pH 6.7, [d-glucose] 0.05 M, and 25  °C, which is ca. 20% less than that when the reaction solutions are purged with argon. In the case of [Ru(bpy)₂Cl₂]⁺ the rate constant equals 1.8×10⁵ M^–1 s^–1 under similar conditions in air, showing higher reactivity of Ru complexes compared with Os ones. The reduction is pH-dependent with a maximum around 7. Added for solubilization of poorly soluble metal complexes, surfactants decrease the rates of the enzymatic reaction. The retardation effect increases in the series: cetyltrimethylammonium bromide < Triton X-100 < sodium dodecyl sulfate, i.e. on going from positively charged to neutral and then to negatively charged surfactants. The behavior of the Os^III and Ru^III complexes toward reduced glucose oxidase contrasts to that of recently studied ferricenium cations. As opposed to the latter, the former do not show kinetically meaningful binding with the enzyme, and the Michaelis kinetics typical of the ferricenium case is not realized for the Os^III, and Ru^III species. The systems Os^III- or Ru^III-glucose oxidase are convenient for routine "one pot" spectrophotometric monitoring of the d-glucose content in samples, since the metal reduction to M^II is accompanied by a strong increase in absorbance in the visible spectral region. Received: 1 July 1998 / Accepted: 13 January 1999     

The state of the reproductive system of several fish species from water bodies polluted with radionuclides during the Chernobyl catastrophe

The state of the reproductive system in several fish species—offspring of individuals exposed to radiation as a result of the catastrophe at the Chernobyl Nuclear Power Plant (CNPP) was studied. Material was collected in water bodies of Ukraine polluted with radionuclides: water cooler of the CNPP (1992, 2002–2004), Lake Glubokoe (2003–2004), Kiev Reservoir, and Teterev River (1997, 1999–2005). It was shown that the total number and the degree of disturbances in gonads of the studied fish species were positively correlated with the levels of pollution of water bodies: in the cleanest water body, Teterev River, the proportion of fish with gonads without considerable deviations was about 78%; in the Kiev Reservoir, 67%; in the water cooler, 51%; and in Lake Glubokoe, 45%. By the number and pattern of gonad anomalies, species specificity in their response to the radiation background was revealed. A smaller degree of damage of sexual cells and gonads in unisexual (triploid) populations of goldfish Carassius auratus reproducing gynogenetically, as compared to bisexual (diploid) populations, was detected. Among postemergency generations of the studied fish species, in all water bodies the number and degree of gonad disturbances were in F_2–4, in Kiev Reservoir and Teterev River, this was most likely accounted for by the phenomenon of prolonged mutagenesis.     

Vertical distribution and composition of phytoplankton under the influence of an upper mixed layer

The vertical distribution of phytoplankton is of fundamental importance for the dynamics and structure of aquatic communities. Here, using an advection-reaction-diffusion model, we investigate the distribution and competition of phytoplankton species in a water column, in which inverse resource gradients of light and a nutrient can limit growth of the biomass. This problem poses a challenge for ecologists, as the location of a production layer is not fixed, but rather depends on many internal parameters and environmental factors. In particular, we study the influence of an upper mixed layer (UML) in this system and show that it leads to a variety of dynamic effects: (i) Our model predicts alternative density profiles with a maximum of biomass either within or below the UML, thereby the system may be bistable or the relaxation from an unstable state may require a long-lasting transition. (ii) Reduced mixing in the deep layer can induce oscillations of the biomass; we show that a UML can sustain these oscillations even if the diffusivity is less than the critical mixing for a sinking phytoplankton population. (iii) A UML can strongly modify the outcome of competition between different phytoplankton species, yielding bistability both in the spatial distribution and in the species composition. (iv) A light limited species can obtain a competitive advantage if the diffusivity in the deep layers is reduced below a critical value. This yields a subtle competitive exclusion effect, where the oscillatory states in the deep layers are displaced by steady solutions in the UML. Finally, we present a novel graphical approach for deducing the competition outcome and for the analysis of the role of a UML in aquatic systems.     

Cell-to-Cell, but not long-distance, spread of RNA silencing that is induced in individual epidermal cells

A Turnip crinkle virus (TCV)-based system was devised to discriminate cell-to-cell and systemic long-distance spread of RNA silencing in plants. Modified TCV-GFPDeltaCP, constructed by replacing the coat protein (CP) gene with the green fluorescent protein (GFP) gene, replicated in single epidermal cells but failed to move from cell to cell in Nicotiana benthamiana. Mechanical inoculation of TCV-GFPDeltaCP induced effective RNA silencing in single epidermal cells which spread from cell to cell to form silenced foci on inoculated leaves, but no long-distance systemic spread of RNA silencing occurred. Agroinfiltration of TCV-GFPDeltaCP was, however, able to induce both local and systemic RNA silencing. TCV coinfection arrested TCV-GFPDeltaCP-mediated local induction of RNA silencing. Possible mechanisms involved in cell-to-cell and long-distance spread of RNA silencing are discussed.     

The state of the reproductive system of the tench Tinca tinca (1999–2005) from water bodies polluted as a result of the catastrophe at the Chernobyl Nuclear Power Plant

The state of the reproductive system of Tinca tinca—descendants of individuals that were exposed to radiation as a result of the catastrophe at the Chernobyl Nuclear Power Plant in 1986 was studied. Material was collected in the postemergency period in radionuclide-polluted water bodies: in the Ukraine, in Kiev Reservoir, the Teterev River, and Lake Glubokoe (1999–2005) and in Belarus, in Lake Svyatoe (1998–1999). It is demonstrated that the total number and the extent of disturbances in the gonads of T. tinca are positively related to the levels of pollution in water bodies: in the cleanest water body, the Teterev River, the proportion of fish with gonads without considerable deviations was about 93%; in Kiev Reservoir, 79%, and in Lake Svyatoe, only 18%. Among the “postemergency” generations of T. tinca, the maximum number of disturbances in sexual cells and gonads was recorded in F_3–4, which is evidently caused by a phenomenon of the “prolonged mutagenesis”. A relatively high species resistance of the reproductive system of T. tinca to the radiation impact, in comparison with other cyprinids, was recorded.     

Characterization of beam patterns of bottlenose dolphin in the transverse plane

The characteristics of absolute auditory sensitivity of the bottlenose dolphin (Tursiops truncatus) in the transverse plane have been measured using short broadband stimuli simulating dolphin clicks (with energy maximum at frequencies 8, 16, 30, 50 and 100 kHz). Experiments were performed using the method of conditioned reflexes with food reinforcement. It is shown that, in the frequency range of 8–30 kHz, the absolute sensitivity of dolphin hearing in any ventral and lateral directions of the transverse plane is only 2–8 dB worse than in the rostral direction. Moreover, it is 25–30 dB better than at 50–100 kHz. At 8–30 kHz, pronounced dorsoventral asymmetry has been observed. In this frequency range, it reaches 15–18 dB whereas at 50–100 kHz this asymmetry decreases to 2–3 dB. In the dorsal direction, the auditory sensitivity is 18 dB worse than in the rostral one at ∼8 kHz, and the difference rises smoothly to 33 dB at ∼100 kHz. At 50–100 kHz, the acoustical thresholds in the transverse plane relative to those for the with rostral direction get worse almost uniformly in all directions by 25–33 dB. As a result, in the transverse plane the beam patterns are nearly circular, unlike those at 8–30 kHz. The results are discussed in terms of the model of sound perception through the left and right mental foramens. The biological relevance of such asymmetry is emphasized.     

A graphical theory of competition on spatial resource gradients

Resource competition is a fundamental interaction in natural communities. However, little remains known about competition in spatial environments where organisms are able to regulate resource distributions. Here, we analyse the competition of two consumers for two resources in a one-dimensional habitat in which the resources are supplied from opposite sides. We show that the success of an invading species crucially depends on the slope of the resource gradients shaped by the resident. Our analysis reveals that parameter combinations, which lead to coexistence in a uniform environment, may favour alternative stable states in a spatial system, and vice versa. Furthermore, differences in growth rate, mortality or dispersal abilities allow a consumer to coexist stationarily with - or even outcompete - a competitor with lower resource requirements. Applying our theory to a phytoplankton model, we explain shifts in the community structure that are induced by environmental changes.     

Imperfect prey selectivity of predators promotes biodiversity and irregularity in food webs

Ecological communities are often characterised by many species occupying the same trophic level and competing over a small number of vital resources. The mechanisms maintaining high biodiversity in such systems are still poorly understood. Here, we revisit the role of prey selectivity by generalist predators in promoting biodiversity. We consider a generic tri‐trophic food web, consisting of a single limiting resource, a large number of primary producers and a generalist predator. We suggest a framework to describe the predator functional response, combining food selectivity for distinctly different functional prey groups with proportion‐based consumption of similar prey species. Our simulations reveal that intermediate levels of prey selectivity can explain a high species richness, functional biodiversity, and variability among prey species. In contrast, perfect food selectivity or purely proportion‐based food consumption leads to a collapse of prey functional biodiversity. Our results are in agreement with empirical phytoplankton rank‐abundance curves in lakes.     

Low levels of taurine introgression in the current Brazilian Nelore and Gir indicine cattle populations

Background

Nelore and Gir are the two most important indicine cattle breeds for production of beef and milk in Brazil. Historical records state that these breeds were introduced in Brazil from the Indian subcontinent, crossed to local taurine cattle in order to quickly increase the population size, and then backcrossed to the original breeds to recover indicine adaptive and productive traits. Previous investigations based on sparse DNA markers detected taurine admixture in these breeds. High-density genome-wide analyses can provide high-resolution information on the genetic composition of current Nelore and Gir populations, estimate more precisely the levels and nature of taurine introgression, and shed light on their history and the strategies that were used to expand these breeds.

Results

We used the high-density Illumina BovineHD BeadChip with more than 777 K single nucleotide polymorphisms (SNPs) that were reduced to 697 115 after quality control filtering to investigate the structure of Nelore and Gir populations and seven other worldwide populations for comparison. Multidimensional scaling and model-based ancestry estimation clearly separated the indicine, European taurine and African taurine ancestries. The average level of taurine introgression in the autosomal genome of Nelore and Gir breeds was less than 1% but was 9% for the Brahman breed. Analyses based on the mitochondrial SNPs present in the Illumina BovineHD BeadChip did not clearly differentiate taurine and indicine haplotype groupings.

Conclusions

The low level of taurine ancestry observed for both Nelore and Gir breeds confirms the historical records of crossbreeding and supports a strong directional selection against taurine haplotypes via backcrossing. Random sampling in production herds across the country and subsequent genotyping would be useful for a more complete view of the admixture levels in the commercial Nelore and Gir populations.

Electronic supplementary material

The online version of this article (doi:10.1186/s12711-015-0109-5) contains supplementary material, which is available to authorized users.