Effects of cytoprotective antioxidants on lymphocytes from representative mitochondrial neurodegenerative diseases

Two new aza analogues of the neuroprotective agent idebenone have been synthesized and characterized. Their antioxidant activity, and ability to augment ATP levels have been evaluated in several different cell lines having suboptimal mitochondrial function. Both compounds were found to be good ROS scavengers, and to protect the cells from oxidative stress induced by glutathione depletion. The compounds were more effective than idebenone in neurodegenerative disease cells. These novel pyrimidinol derivatives were also shown to augment ATP levels in coenzyme Q₁₀-deficient human lymphocytes. The more lipophilic side chains attached to the pyrimidinol redox core in these compounds resulted in less inhibition of the electron transport chain and improved antioxidant activity.     

Computer-Aided Resolution of an Experimental Paradox in Bacterial Chemotaxis

Escherichia coli responds to its environment by means of a network of intracellular reactions which process signals from membrane-bound receptors and relay them to the flagellar motors. Although characterization of the reactions in the chemotaxis signaling pathway is sufficiently complete to construct computer simulations that predict the phenotypes of mutant strains with a high degree of accuracy, two previous experimental investigations of the activity remaining upon genetic deletion of multiple signaling components yielded several contradictory results (M. P. Conley, A. J. Wolfe, D. F. Blair, and H. C. Berg, J. Bacteriol. 171:5190–5193, 1989; J. D. Liu and J. S. Parkinson, Proc. Natl. Acad. Sci. USA 86:8703–8707, 1989). For example, “building up” the pathway by adding back CheA and CheY to a gutted strain lacking chemotaxis genes resulted in counterclockwise flagellar rotation whereas “breaking down” the pathway by deleting chemotaxis genes except cheA and cheY resulted in alternating episodes of clockwise and counterclockwise flagellar rotation. Our computer simulation predicts that trace amounts of CheZ expressed in the gutted strain could account for this difference. We tested this explanation experimentally by constructing a mutant containing a new deletion of the che genes that cannot express CheZ and verified that the behavior of strains built up from the new deletion does in fact conform to both the phenotypes observed for breakdown strains and computer-generated predictions. Our findings consolidate the present view of the chemotaxis signaling pathway and highlight the utility of molecularly based computer models in the analysis of complex biochemical networks.     

The origin and distribution of Senecio cambrensis rosser in Edinburgh

Background: Range expansion often results in colonisation bottlenecks that should both deplete genetic diversity and increase genetic differentiation towards the margins of a species' geographic distribution.

Aims: We tested whether genetic differentiation increased among populations of the annual plant Mercurialis annua after its colonisation of the Iberian Peninsula from Morocco. Previous work showed that this colonisation resulted in a decrease of phenotypic and genetic diversity from the core in North Africa towards the distribution margins of M. annua in north-eastern and north-western Spain.

Methods: Seeds were sampled from 20 populations located across the hexaploid range of M. annua. Patterns of phenotypic and genetic differentiation among experimentally grown populations were analysed and compared between the Iberian Peninsula and North Africa.

Results: The level of phenotypic and genetic differentiation among populations in the expanded range of the Iberian Peninsula was similar to that in the core range in North Africa.

Conclusions: Our findings imply that the observed effects of range expansion on genetic differentiation may be independent of the effects on genetic diversity. They point to the importance of taking both historic and contemporary processes of migration into account when predicting the results of range expansion.     

General Nearest Neighbor Preferences in G/C Oligomers Interrupted by A/T: Correlation with DNA Structure

Abstract

The frequencies of occurrence of the 5′ and 3′ nearest neighbor doublets of oligonucleotides containing (G/C) and (A/T) blocks show strong trends. Specifically, the following trends are observed. Given a (G/C)_n (A/T)_m oligomer (where G/C)_n indicates a sequence of length n composed solely of Gs and/or Cs and (A/T)_mis a sequence of length m composed solely of As and/or Ts, and n=3,2,1; m = 1,2,3) and a (G/C)₂ doublet, (G/C)_n (A/T)_m (G/C)_n > (G/C)_n+2 (A/T)_m- That is the (G/C)₂ doublet is preferentially located 3′ of the oligomer, enclosing the (A/T)_m stretch. The trends are strongest for n=3, m= 1 and gradually weaken as the size of the (G/C)_n block decreases (with a concomitant increase of (A/T)_m). (A/T)₂ nearest neighbor flank preferentially encloses the (G/C)_n block (to produce (A/T) ₂(G/C) _n (A/T)_m). The (A/T)₂ flank trends are weaker than the (G/C)₂ flank ones. The (A/T)₂ flank trends also decrease in strength as the size of the (G/C)_n block decreases. The statistical significance of these trends in eukaryotes is very high. A possible correlation with DNA structural parameters, in particular groove geometry, is discussed.     

Prenatal Diagnosis of Tay-Sachs Genotypes

Hexosaminidase activity was determined in cultured and uncultured amniotic fluid cells taken from seven pregnant women who had previously given birth to infants with Tay-Sachs disease. Complete deficiency of hexosaminidase A was found in one case, indicating a Tay-Sachs fetus. The diagnosis was confirmed on examination of various tissues after therapeutic abortion. Of the other six cases three were considered heterozygous and three homozygous normal. These diagnoses were confirmed postnatally on examination of cord blood leucocytes, peripheral leucocytes, and urine. The activity of hexosaminidase A is appreciably decreased in dead cells and hence in uncultured amniotic fluid cells. Hence reliable identification in utero of the three genotypes may be achieved only by examining the cultured living amniotic cells.     

Epithelial expression of TLR4 is modulated in COPD and by steroids,salmeterol and cigarette smoke

The toll-like receptors (TLRs) are a key component of host defense in the respiratory epithelium. Cigarette smoking is associated with increased susceptibility to infection, while COPD is characterised by bacterial colonisation and infective exacerbations. We found reduced TLR4 gene expression in the nasal epithelium of smokers compared with non-smoking controls, while TLR2 expression was unchanged. Severe COPD was associated with reduced TLR4 expression compared to less severe disease, with good correlation between nasal and tracheal expression. We went on to examine the effect of potential modulators of TLR4 expression in respiratory epithelium pertinent to airways disease. Using an airway epithelial cell line, we found a dose-dependent downregulation in TLR4 mRNA and protein expression by stimulation with cigarette smoke extracts. Treatment with the corticosteroids fluticasone and dexamethasone resulted in a dose-dependent reduction in TLR4 mRNA and protein. The functional significance of this effect was demonstrated by impaired IL-8 and HBD2 induction in response to LPS. Stimulation with salmeterol (10^-6 M) caused upregulation of TLR4 membrane protein presentation with no upregulation of mRNA, suggesting a post-translational effect. The effect of dexamethasone and salmeterol in combination was additive, with downregulation of TLR4 gene expression, and no change in membrane receptor expression. Modulation of TLR4 in respiratory epithelium may have important implications for airway inflammation and infection in response to inhaled pathogens.