杨盘二孢菌诱导的杨树差异表达基因的功能分析和染色体定位

利用cDNA芯片技术从含有2,952个克隆的杨树芯片中筛选出1,160个受杨盘二孢菌诱导的基因。功能分析表明,该1,160个基因分别属于11个功能类别,除了功能未知基因外,参与新陈代谢、防御反应、信号传导及转录调控的基因最多,这4大类基因约占基因总数的42%。1,160个差异表达基因中有926个基因被定位于19条染色体上,其中被定位于第Ⅱ条染色体上的差异基因最多,共102个(11.0%),其次是第Ⅰ条染色体,共93个(10%),被定位到第ⅩⅦ条染色体上的差异基因最少,仅有11个,基因在染色体上的分布则表现为在部分染色体的末端区域存在大量的聚集,在中间区段则相对较少和排列稀疏,基因的这种分布情况与植物抗病的关系有待进一步研究。     

Repeated integration of antibody genes into a pre-selected chromosomal locus of CHO cells using an accumulative site-specific gene integration system

We previously reported an accumulative site-specific gene integration system using Cre recombinase and mutated loxP sites, where a recombinase-mediated cassette exchange (RMCE) reaction is repeatable. This gene integration system was applied for antibody production using recombinant Chinese hamster ovary (CHO) cells. We introduced an exchange cassette flanked by wild-type and mutated loxP sites into the chromosome of CHO cells for the establishment of recipient founder cells. Then, the donor plasmids including an expression cassette for an antibody gene flanked by a compatible pair of loxP sites were prepared. The donor plasmid and a Cre expression vector were co-transfected into the founder CHO cells to give rise to RMCE in the CHO genome, resulting in site-specific integration of the antibody gene. The RMCE procedure was repeated to increase the copy numbers of the integrated gene. Southern blot and genomic PCR analyses for the established cells revealed that the transgenes were integrated into the target site. Antibody production determined by ELISA and western blotting was increased corresponding to the number of transgenes. These results indicate that the accumulative site-specific gene integration system could provide a useful tool for increasing the productivity of recombinant proteins.     

Quantitative determination of helicid in rat biosamples by liquid chromatography electrospray ionization mass spectrometry

A simple liquid chromatography electrospray ionization mass spectrometry (LC–ESI–MS) method with highly improved sensitivities for the determination of helicid in rat bile, urine, feces and most tissues was developed. The tissues and feces were firstly homogenized mechanically using deionized water as the media. Bile, urine, tissues and feces homogenates were extracted by liquid–liquid extraction with n-butyl alcohol for sample preparation. The subsequent analysis procedures were performed on a Shimadzu LCMS2010A system (electrospray ionization single quadrupole mass analyzer). A Luna C₁₈ column (150 mm × 2.00 mm, 5 μm) was used as the analytical column, while a mixture of acetonitrile and ammonium chloride water solution was used as the mobile phase. The proportions of mobile phase were changed timely according to gradient programs. Chlorinated adducts of molecular ions [M+Cl]^? at m/z 319.00 and 363.05 were used to quantify helicid and bergeninum (internal standard), respectively. The method was validated to be accurate, precise and rugged with good linearity. The proposed method was successfully applied to the preclinical tissue distribution and excretion studies of helicid in rats.     

Study on coastal wetland habitat quality evaluation in Quanzhou Bay, Fujian, China

Coastal wetland is located in the active interface between land and sea, which is one of the richest biodiversity habitats, while it is seriously disturbed and destroyed by anthropogenic activities in both terrestrial and marine parts. Habitat serves as the basis for organism survival, providing food, shelter, water, space and so on, and habitat degradation and loss caused by intense anthropogenic activities is widely considered as the main reason for biodiversity decline and loss. However, there is still limited study on the evaluating methods of coastal wetland habitats, especially for those in a large scale. In this study, methods for evaluating coastal wetland habitat quality, including selecting indicators, setting value assignment criteria and weights were discussed systematically, a method of coastal wetland habitat quality evaluation was established, and the habitat quality in Quanzhou Bay was also evaluated as a case study. The present study provided a new concept and method to assess quantitatively habitat status, indicate the ecological status and its change, and also reflect and predict indirectly the ecological impact of human activities.
Referring to the habitat evaluation system (HES) developed by United States in the mid 1970s, the evaluation method was established by thorough analysis of the characteristics of coastal wetland. The habitat indicators were selected in terms of three habitat factors as follows: chemical factors, including dissolved oxygen (DO), phosphate in seawater, sulfide in sediment, and regional priority pollutants; physical factors, including landscape naturalness index and coastline artificialization index; biological factors, including invasive species risk and area ratio of invasive alien species. Weights were established by Analytic Hierarchy Process, combined with several-round expert evaluation. Evaluation criteria providing principles for value assignment of each indicator, were established referring to previous standards and related researches. The final result for assessing habitat quality was indicated and stated by the value of Habitat Quality Index (HQI), which is the weighted sum of each indicator. Habitat quality increased with the HQI value, with value ranging from 0 to 100.
The established evaluating method was applied to assess the habitat quality of Quanzhou Bay, located in the southeast coastal zone of Fujian Province, with a total area of 136.4 km², which is an important bay in Fujian. Quanzhou Bay wetland is a typical coastal wetland with diverse wetland habitats, including mangrove, estuary, island, aquaculture ponds, salt pan, shallow sea, mud flat and so on. The Quanzhou Bay is now seriously suffering environmental problems, e.g. eutrophication due to great discharge of domestic, agricultural and industrial wastewater, rapid urbanization and reclamation resulting in decreased wetland area, and the invasion of alien species. The evaluation results showed that the habitat quality index value was 68.13, 57.99 and 51.23 in 1989, 2002 and 2008, respectively, indicating that the habitat degraded gradually. The five major factors that led to decline of HQI value were phosphate in seawater, lead in sediment, landscape naturalness index and coastline artificialization index and area ratio of invasive alien species. Therefore, in order to improve and maintain habitat quality, it is urgent to control pollution, large-scale reclamation and Spartina invasion in Quzhou Bay.     

高度耐盐双价转基因烟草的研究

随着全球性人口的增长和土地退化的加剧,开发利用广阔盐碱地和干旱土地的需要日益迫切。植物生物技术的日臻完善,为培育高效耐盐植物迎来了一丝曙光。在高渗条件下,耐盐的微生物或植物细胞通过增加胞内一些相溶性溶质的浓度来维持渗透压的平衡。这些可溶性溶质包括无机离子、糖类、多元醇、氨基酸和生物碱等。通过基因工程手段,使细胞内积累脯氮酸⑴、甜菜碱⑵、甘露醇⑶、海藻糖⑷,能够不同程度地提高转基因烟草的耐盐性。多元醇含有多个羟基,亲水性能强,能有效维持细胞内水活度。山梨醇、甘露醇等己糖分子结构、理化性质和生理功能相近。故此．我们认为：不同糖醇在转基因烟草中的积累．可能具有协同(或累加)效应,有希望更大地提高植物耐盐性。我们在获得大肠杆菌mtlD基因(编码l-磷酸甘露醇脱氢酶)和gutD基因(编码6-磷酸山梨醇脱氢酶)克隆⑸的基础上,获得了分别表达mtlD和gutD基因的单价转基因烟草,并首次证实了gucD基因的表达,能显著地提高转基因烟草的耐盐性⑹。本文工作进一步报道同时表达大肠杆菌mtlD和gutD基因双价转基因烟草的高效高度耐盐性。     

血管紧张素转换酶2-血管紧张素1-7-Mas轴对血管作用的研究进展

血管紧张素转换酶2（ACE2）和Mas受体的发现使人们对肾素-血管紧张素（RAS）有了更全面的认识。ACE2可水解血管紧张素Ⅰ和血管紧张素Ⅱ直接或间接生成血管紧张素1-7（Ang 1-7）,并与高血压的形成密切相关。Ang 1-7主要通过Mas受体引起血管舒张、抑制细胞增殖。ACE2-Ang1-7-Mas轴的发现为RAS的研究、高血压等心血管疾病的防治和新药开发提供了新的思路和方向。     

Effects of thymic polypeptides on the thymopoiesis of mouse embryonic stem cells

The thymus provides a unique cellular and hormonic microenvironment for the development of immunocompetent T cells. Thymic polypeptides have been widely used clinically for the treatment of tumors, infectious diseases and immune deficiency diseases. They have already shown the ability to stimulate the maturation of hematopoietic stem cells towards the CD3+CD4+ T cell lineage. However, their effects on the thymopoiesis of embryonic stem cells are still unexplored. In this paper, we compared the effects of three thymic polypeptides, thymopentin (TP5), thymosin alpha-1 (Talpha-1) and thymopeptides on the in vitro thymopoiesis of mouse embryonic stem (ES) cells. Using the embryoid body induction system, we found that both Talpha-1 and thymopeptides effectively induced ES cells to differentiate sequentially into the CD3+ and CD4+/CD8+ T cells. These T cells had T cell receptor (TCR) Vbeta gene rearrangement and most were TCRalphabeta T cells. We also found that the expression of the Notch receptor and its ligands Delta-like-1 and Delta-like-4 gradually increased during the induction. However, TP5 failed to induce the T cell differentiation of the ES cells. In summary, this is the first report to demonstrate that Talpha-1 can stimulate the T cell early stage differentiation from ES cells using the embryoid body protocol. These findings provide a powerful model for studying T cell development and may open new venues for the clinical application of Talpha-1.     

Evaluation of protocols used in 2-d electrophoresis for proteome analysis of young rice caryopsis

In order to obtain a high-resolution electrophorogram of rice young panicle proteome, we evaluated various protocols commonly used in two-dimensional (2D) polyacrylamide gel electrophoresis (PAGE) of proteins, including gel staining protocol, pH range of immobilized pH gradient (IPG) strips and sample loading quantity. Results showed that a silver staining protocol using sensitized solution containing glacial acetic acid, sodium acetate and sodium thiosulfate (reported by Heukeshoven and Dernick in 1988) and a Coomassie Brilliant Blue staining method using solution containing G-250, ammonium sulfate and phosphoric acid (reported by Pink et al in 2010) demonstrated the superior staining effect. In addition, we also showed that higher resolution was achieved when IPG gel strip with pH range of 5-8 was used, compared to that with pH range of 4-7. Finally, the optimal loading quantity was determined as 130 μg using the 17 cm-long nonlinear IPG strip with pH 5-8 in combination with the silver nitrate staining protocol. The evaluated results would be helpful in proteome analysis of young rice caryopsis.     

Generating gene knockout rats by homologous recombination in embryonic stem cells

We describe here a detailed protocol for generating gene knockout rats by homologous recombination in embryonic stem (ES) cells. This protocol comprises the following procedures: derivation and expansion of rat ES cells, construction of gene-targeting vectors, generation of gene-targeted rat ES cells and, finally, production of gene-targeted rats. The major differences between this protocol and the classical mouse gene-targeting protocol include ES cell culture methods, drug selection scheme, colony picking and screening strategies. This ES cell-based gene-targeting technique allows sophisticated genetic modifications to be performed in the rat, as many laboratories have been doing in the mouse for the past two decades. Recently we used this protocol to generate Tp53 (also known as p53) gene knockout rats. The entire process requires ～1 year to complete, from derivation of ES cells to generation of knockout rats.